Wall clock time and date at job start Tue Mar 31 2020 00:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47183 * 2 1 4 4 O 1.42911 * 109.46951 * 240.00537 * 2 1 3 5 5 C 1.52999 * 109.47752 * 120.00416 * 2 1 3 6 6 N 1.46503 * 115.54720 * 34.92981 * 5 2 1 7 7 S 1.65600 * 120.00002 * 69.63502 * 6 5 2 8 8 O 1.42094 * 106.40224 * 170.48092 * 7 6 5 9 9 O 1.42100 * 106.40108 * 303.40440 * 7 6 5 10 10 N 1.65596 * 107.21761 * 56.94165 * 7 6 5 11 11 C 1.46503 * 120.00286 * 262.92704 * 10 7 6 12 12 C 1.46499 * 120.00013 * 82.92590 * 10 7 6 13 13 C 1.50700 * 109.47133 * 95.00227 * 12 10 7 14 14 H 1.07999 * 120.00007 * 359.97438 * 13 12 10 15 15 C 1.37881 * 120.00269 * 180.02562 * 13 12 10 16 16 N 1.31521 * 119.99813 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00126 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47290 * 90.00010 * 17 15 13 19 19 H 1.48504 * 109.47079 * 210.00141 * 17 15 13 20 20 H 1.48502 * 109.47153 * 329.99898 * 17 15 13 21 21 C 1.53001 * 117.49927 * 249.26392 * 5 2 1 22 22 C 1.53000 * 117.50412 * 180.60186 * 5 2 1 23 23 H 1.09002 * 109.47239 * 177.69830 * 1 2 3 24 24 H 1.09001 * 109.47600 * 57.69593 * 1 2 3 25 25 H 1.09004 * 109.47205 * 297.69711 * 1 2 3 26 26 H 0.96691 * 113.99376 * 309.03373 * 4 2 1 27 27 H 0.97004 * 119.99706 * 249.63771 * 6 5 2 28 28 H 1.09008 * 109.47005 * 91.50634 * 11 10 7 29 29 H 1.08997 * 109.47180 * 211.50511 * 11 10 7 30 30 H 1.09004 * 109.46668 * 331.51178 * 11 10 7 31 31 H 1.08999 * 109.47269 * 215.00172 * 12 10 7 32 32 H 1.08998 * 109.47163 * 335.00021 * 12 10 7 33 33 H 0.96995 * 119.99490 * 180.02562 * 16 15 13 34 34 H 1.09001 * 117.49800 * 359.97438 * 21 5 2 35 35 H 1.08999 * 117.49519 * 145.01748 * 21 5 2 36 36 H 1.08993 * 117.49829 * 214.97758 * 22 5 2 37 37 H 1.09005 * 117.49536 * 359.97438 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7213 1.2491 6 7 1.2291 -1.8553 1.6994 7 16 1.1800 -3.2462 0.8021 8 8 0.5082 -4.2133 1.5974 9 8 0.7446 -2.8703 -0.4973 10 7 2.7394 -3.7783 0.6370 11 6 3.4980 -3.4590 -0.5750 12 6 3.3606 -4.5683 1.7029 13 6 3.2080 -6.0356 1.3948 14 1 2.6988 -6.3483 0.4952 15 6 3.7174 -6.9788 2.2619 16 7 4.3370 -6.5980 3.3578 17 14 3.5276 -8.7975 1.8803 18 1 4.6931 -9.2608 1.0852 19 1 3.4578 -9.5650 3.1497 20 1 2.2809 -9.0126 1.1026 21 6 2.7287 0.1249 2.3219 22 6 3.5550 -0.8158 1.4413 23 1 -0.3634 -1.0268 -0.0413 24 1 -0.3634 0.5492 -0.8686 25 1 -0.3634 0.4777 0.9099 26 1 1.6128 -1.5459 -1.3056 27 1 0.7208 -1.7912 2.5232 28 1 4.0486 -2.5302 -0.4250 29 1 4.1986 -4.2663 -0.7884 30 1 2.8111 -3.3428 -1.4134 31 1 4.4196 -4.3194 1.7697 32 1 2.8741 -4.3439 2.6521 33 1 4.6957 -7.2616 3.9675 34 1 2.8186 1.1954 2.1375 35 1 2.5786 -0.1624 3.3625 36 1 3.9482 -1.7214 1.9030 37 1 4.1883 -0.3644 0.6775 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595362273.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:18 Heat of formation + Delta-G solvation = -97.204442 kcal Electronic energy + Delta-G solvation = -21813.806657 eV Core-core repulsion = 18526.158161 eV Total energy + Delta-G solvation = -3287.648497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.15141 -36.83427 -35.61151 -35.54018 -35.20849 -32.46977 -31.99894 -30.17706 -27.78938 -25.08357 -23.79019 -22.51279 -22.32604 -20.70612 -18.69913 -17.51228 -16.88813 -16.79685 -16.39562 -15.82191 -15.26342 -14.90915 -14.68734 -14.32723 -13.73605 -13.40868 -13.21322 -12.64108 -12.34471 -12.21790 -12.03081 -11.84114 -11.67739 -11.52761 -11.45747 -11.18973 -11.12152 -11.02372 -10.80975 -10.71584 -10.57487 -10.41117 -10.05092 -9.92312 -9.77125 -9.09789 -8.47571 -8.09399 -6.09466 -4.13267 1.10722 3.29987 3.32397 3.36534 3.42972 3.57994 3.90686 4.42463 4.45929 4.69544 4.86090 4.90815 5.04075 5.19752 5.25861 5.35531 5.49504 5.60644 5.63897 5.78807 5.99984 6.02523 6.06493 6.14134 6.21410 6.35003 6.38722 6.56173 7.05380 7.18761 7.37109 7.55693 7.88405 8.11656 8.16767 8.89317 9.52184 10.99117 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029322 B = 0.006253 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.688030 B = 4476.495064 C = 4704.934335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.135 3.865 3 H 0.103 0.897 4 O -0.576 6.576 5 C 0.060 3.940 6 N -1.100 6.100 7 S 2.787 3.213 8 O -0.961 6.961 9 O -1.000 7.000 10 N -0.990 5.990 11 C 0.093 3.907 12 C 0.260 3.740 13 C -0.528 4.528 14 H 0.061 0.939 15 C 0.062 3.938 16 N -0.897 5.897 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.161 4.161 22 C -0.164 4.164 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.392 0.608 27 H 0.413 0.587 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.033 0.967 33 H 0.264 0.736 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 14.376 -3.403 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.074 3.926 3 H 0.121 0.879 4 O -0.394 6.394 5 C -0.031 4.031 6 N -0.857 5.857 7 S 2.795 3.205 8 O -0.945 6.945 9 O -0.984 6.984 10 N -0.833 5.833 11 C -0.053 4.053 12 C 0.138 3.862 13 C -0.567 4.567 14 H 0.079 0.921 15 C -0.141 4.141 16 N -0.536 5.536 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.200 4.200 22 C -0.203 4.203 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.252 0.748 27 H 0.247 0.753 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.231 14.343 -3.835 15.194 hybrid contribution -0.276 -1.361 0.705 1.558 sum -3.507 12.982 -3.130 13.806 Atomic orbital electron populations 1.22503 0.96083 1.03795 1.01877 1.21517 0.93381 0.95120 0.82579 0.87916 1.86466 1.70520 1.38691 1.43697 1.21387 0.90967 0.92472 0.98254 1.55657 1.60698 1.29283 1.40026 1.01733 0.73485 0.72259 0.73042 1.93661 1.73284 1.57322 1.70197 1.93141 1.80648 1.83521 1.41060 1.57412 1.32679 1.65947 1.27274 1.21457 0.97047 1.00824 0.85978 1.19022 0.94073 0.89736 0.83359 1.21494 1.36632 0.90953 1.07653 0.92093 1.24935 0.94940 0.99394 0.94791 1.69917 1.37794 1.34276 1.11610 0.86503 0.78610 0.84571 0.77823 1.20573 1.21071 1.19698 1.23228 1.02973 0.97411 0.96339 1.23485 0.92064 1.02422 1.02322 0.91041 0.91982 0.92002 0.74764 0.75258 0.93303 0.90520 0.91712 0.94541 0.94942 0.92680 0.88022 0.88051 0.87103 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 8.91 37.15 0.33 -1.94 16 2 C 0.14 1.72 3.48 -26.74 -0.09 1.63 16 3 H 0.10 1.08 7.90 -51.93 -0.41 0.67 16 4 O -0.58 -8.75 13.26 -54.81 -0.73 -9.48 16 5 C 0.06 0.77 2.07 -131.82 -0.27 0.50 16 6 N -1.10 -16.01 4.91 0.54 0.00 -16.00 16 7 S 2.79 52.58 5.87 -107.50 -0.63 51.95 16 8 O -0.96 -22.49 17.37 -57.17 -0.99 -23.48 16 9 O -1.00 -18.49 10.69 -65.40 -0.70 -19.19 16 10 N -0.99 -19.64 2.66 -123.05 -0.33 -19.97 16 11 C 0.09 1.58 10.25 59.85 0.61 2.19 16 12 C 0.26 6.30 5.08 -5.19 -0.03 6.28 16 13 C -0.53 -14.61 9.38 -34.44 -0.32 -14.93 16 14 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.90 -25.84 13.29 55.43 0.74 -25.11 16 17 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.16 -1.66 10.11 -26.69 -0.27 -1.93 16 22 C -0.16 -2.06 8.28 -26.69 -0.22 -2.28 16 23 H 0.07 1.02 5.53 -51.93 -0.29 0.73 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.39 6.41 4.02 45.32 0.18 6.59 16 27 H 0.41 5.27 8.96 -34.47 -0.31 4.96 16 28 H 0.05 0.72 6.75 -51.92 -0.35 0.37 16 29 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 30 H 0.06 1.03 6.34 -51.93 -0.33 0.70 16 31 H 0.04 0.90 8.11 -51.93 -0.42 0.47 16 32 H 0.03 0.84 7.80 -51.93 -0.41 0.43 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 34 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.11 1.60 7.94 -51.93 -0.41 1.19 16 37 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 310.11 15.07 4.67 4.67 Total: -1.00 -31.91 310.11 -8.16 -40.07 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.82 Total: 8.70 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.36 Total: -8.86 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: 0.41 Total: -61.08 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -2.42 Total: -52.15 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 52.58 SS G_CDS: -0.63 Total: 51.95 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.91 -8.16 -40.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595362273.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.132 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds