Wall clock time and date at job start Tue Mar 31 2020 00:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47183 * 2 1 4 4 O 1.42911 * 109.46951 * 240.00537 * 2 1 3 5 5 C 1.52999 * 109.47752 * 120.00416 * 2 1 3 6 6 N 1.46503 * 115.54720 * 34.92981 * 5 2 1 7 7 S 1.65600 * 120.00002 * 69.63502 * 6 5 2 8 8 O 1.42094 * 106.40224 * 170.48092 * 7 6 5 9 9 O 1.42100 * 106.40108 * 303.40440 * 7 6 5 10 10 N 1.65596 * 107.21761 * 56.94165 * 7 6 5 11 11 C 1.46503 * 120.00286 * 262.92704 * 10 7 6 12 12 C 1.46499 * 120.00013 * 82.92590 * 10 7 6 13 13 C 1.50700 * 109.47133 * 95.00227 * 12 10 7 14 14 H 1.07999 * 120.00007 * 359.97438 * 13 12 10 15 15 C 1.37881 * 120.00269 * 180.02562 * 13 12 10 16 16 N 1.31521 * 119.99813 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00126 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47290 * 90.00010 * 17 15 13 19 19 H 1.48504 * 109.47079 * 210.00141 * 17 15 13 20 20 H 1.48502 * 109.47153 * 329.99898 * 17 15 13 21 21 C 1.53001 * 117.49927 * 249.26392 * 5 2 1 22 22 C 1.53000 * 117.50412 * 180.60186 * 5 2 1 23 23 H 1.09002 * 109.47239 * 177.69830 * 1 2 3 24 24 H 1.09001 * 109.47600 * 57.69593 * 1 2 3 25 25 H 1.09004 * 109.47205 * 297.69711 * 1 2 3 26 26 H 0.96691 * 113.99376 * 309.03373 * 4 2 1 27 27 H 0.97004 * 119.99706 * 249.63771 * 6 5 2 28 28 H 1.09008 * 109.47005 * 91.50634 * 11 10 7 29 29 H 1.08997 * 109.47180 * 211.50511 * 11 10 7 30 30 H 1.09004 * 109.46668 * 331.51178 * 11 10 7 31 31 H 1.08999 * 109.47269 * 215.00172 * 12 10 7 32 32 H 1.08998 * 109.47163 * 335.00021 * 12 10 7 33 33 H 0.96995 * 119.99490 * 180.02562 * 16 15 13 34 34 H 1.09001 * 117.49800 * 359.97438 * 21 5 2 35 35 H 1.08999 * 117.49519 * 145.01748 * 21 5 2 36 36 H 1.08993 * 117.49829 * 214.97758 * 22 5 2 37 37 H 1.09005 * 117.49536 * 359.97438 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7213 1.2491 6 7 1.2291 -1.8553 1.6994 7 16 1.1800 -3.2462 0.8021 8 8 0.5082 -4.2133 1.5974 9 8 0.7446 -2.8703 -0.4973 10 7 2.7394 -3.7783 0.6370 11 6 3.4980 -3.4590 -0.5750 12 6 3.3606 -4.5683 1.7029 13 6 3.2080 -6.0356 1.3948 14 1 2.6988 -6.3483 0.4952 15 6 3.7174 -6.9788 2.2619 16 7 4.3370 -6.5980 3.3578 17 14 3.5276 -8.7975 1.8803 18 1 4.6931 -9.2608 1.0852 19 1 3.4578 -9.5650 3.1497 20 1 2.2809 -9.0126 1.1026 21 6 2.7287 0.1249 2.3219 22 6 3.5550 -0.8158 1.4413 23 1 -0.3634 -1.0268 -0.0413 24 1 -0.3634 0.5492 -0.8686 25 1 -0.3634 0.4777 0.9099 26 1 1.6128 -1.5459 -1.3056 27 1 0.7208 -1.7912 2.5232 28 1 4.0486 -2.5302 -0.4250 29 1 4.1986 -4.2663 -0.7884 30 1 2.8111 -3.3428 -1.4134 31 1 4.4196 -4.3194 1.7697 32 1 2.8741 -4.3439 2.6521 33 1 4.6957 -7.2616 3.9675 34 1 2.8186 1.1954 2.1375 35 1 2.5786 -0.1624 3.3625 36 1 3.9482 -1.7214 1.9030 37 1 4.1883 -0.3644 0.6775 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595362273.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:18 Heat of formation + Delta-G solvation = -121.785093 kcal Electronic energy + Delta-G solvation = -21814.872554 eV Core-core repulsion = 18526.158161 eV Total energy + Delta-G solvation = -3288.714394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19517 -38.35106 -37.23099 -37.07304 -36.47982 -34.51686 -33.16080 -31.18572 -29.66377 -26.78665 -24.77866 -24.20510 -23.42194 -21.83380 -20.10053 -19.05921 -18.41375 -18.37958 -17.94320 -17.13530 -16.73380 -16.27288 -15.93553 -15.62494 -15.20968 -15.00851 -14.46838 -14.09957 -13.97954 -13.66752 -13.38604 -13.32549 -13.15970 -13.03267 -12.94791 -12.66671 -12.49916 -12.40598 -12.34691 -12.11300 -11.94083 -11.85254 -11.74305 -11.50029 -10.93291 -10.60376 -10.19983 -9.78104 -8.21787 -6.33111 -0.38552 1.38253 1.40318 1.50866 1.91213 2.38361 2.48543 2.62999 3.09245 3.40668 3.49601 3.78800 3.88391 3.97991 4.09261 4.20873 4.42520 4.53517 4.74617 4.80465 4.83679 4.88394 5.06698 5.08351 5.11448 5.14074 5.18205 5.29175 5.39059 5.46105 5.68107 5.85087 6.07070 6.12772 6.75158 6.93046 7.35798 8.85607 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029322 B = 0.006253 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.688030 B = 4476.495064 C = 4704.934335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.129 3.871 3 H 0.133 0.867 4 O -0.588 6.588 5 C 0.042 3.958 6 N -1.087 6.087 7 S 2.800 3.200 8 O -1.012 7.012 9 O -0.997 6.997 10 N -0.994 5.994 11 C 0.090 3.910 12 C 0.278 3.722 13 C -0.549 4.549 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.924 5.924 17 Si 0.955 3.045 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.276 1.276 21 C -0.130 4.130 22 C -0.177 4.177 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.384 0.616 27 H 0.422 0.578 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.012 0.988 33 H 0.267 0.733 34 H 0.135 0.865 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 15.951 -3.646 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.069 3.931 3 H 0.151 0.849 4 O -0.404 6.404 5 C -0.049 4.049 6 N -0.848 5.848 7 S 2.809 3.191 8 O -0.996 6.996 9 O -0.981 6.981 10 N -0.836 5.836 11 C -0.055 4.055 12 C 0.154 3.846 13 C -0.588 4.588 14 H 0.070 0.930 15 C -0.187 4.187 16 N -0.564 5.564 17 Si 0.780 3.220 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.201 1.201 21 C -0.169 4.169 22 C -0.216 4.216 23 H 0.065 0.935 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.243 0.757 27 H 0.259 0.741 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.153 0.847 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.068 15.932 -4.096 16.734 hybrid contribution -0.340 -1.724 0.770 1.918 sum -3.408 14.208 -3.326 14.984 Atomic orbital electron populations 1.22517 0.95921 1.02598 1.03393 1.21826 0.93691 0.96108 0.81503 0.84927 1.86455 1.70767 1.38223 1.44999 1.21638 0.90798 0.92509 0.99913 1.55205 1.61055 1.28450 1.40072 1.01120 0.72694 0.72379 0.72918 1.93589 1.74487 1.60099 1.71420 1.93163 1.80386 1.83479 1.41053 1.57277 1.32917 1.66160 1.27278 1.21613 0.97156 1.01580 0.85155 1.18538 0.93535 0.88770 0.83726 1.21853 1.36500 0.93020 1.07439 0.93040 1.25722 0.94699 1.03558 0.94717 1.70001 1.38433 1.35638 1.12305 0.85605 0.78736 0.79756 0.77923 1.19024 1.20360 1.20053 1.23397 0.99167 0.98623 0.95681 1.23474 0.91902 1.02604 1.03630 0.93467 0.91242 0.89873 0.75674 0.74130 0.91022 0.91251 0.90669 0.95220 0.96998 0.92374 0.84700 0.87683 0.89518 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.15 8.91 71.98 0.64 -3.51 16 2 C 0.13 2.92 3.48 30.59 0.11 3.02 16 3 H 0.13 2.22 7.90 -2.39 -0.02 2.20 16 4 O -0.59 -16.72 13.26 -130.26 -1.73 -18.45 16 5 C 0.04 0.97 2.07 3.60 0.01 0.98 16 6 N -1.09 -30.74 4.91 -152.21 -0.75 -31.48 16 7 S 2.80 106.55 5.87 -56.49 -0.33 106.22 16 8 O -1.01 -48.70 17.37 -128.00 -2.22 -50.92 16 9 O -1.00 -36.73 10.69 -120.13 -1.28 -38.01 16 10 N -0.99 -39.94 2.66 -543.21 -1.44 -41.38 16 11 C 0.09 3.03 10.25 127.77 1.31 4.34 16 12 C 0.28 13.82 5.08 85.63 0.44 14.26 16 13 C -0.55 -30.97 9.38 25.60 0.24 -30.73 16 14 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 15 C 0.01 0.71 5.46 84.65 0.46 1.17 16 16 N -0.92 -53.80 13.29 21.45 0.28 -53.52 16 17 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 C -0.13 -2.23 10.11 30.62 0.31 -1.92 16 22 C -0.18 -4.09 8.28 30.62 0.25 -3.83 16 23 H 0.05 1.28 5.53 -2.39 -0.01 1.27 16 24 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.38 12.14 4.02 -77.85 -0.31 11.83 16 27 H 0.42 10.44 8.96 -96.74 -0.87 9.57 16 28 H 0.07 2.05 6.75 -2.38 -0.02 2.03 16 29 H 0.07 2.40 8.08 -2.39 -0.02 2.38 16 30 H 0.07 2.35 6.34 -2.38 -0.02 2.34 16 31 H 0.03 1.50 8.11 -2.39 -0.02 1.48 16 32 H 0.01 0.64 7.80 -2.39 -0.02 0.62 16 33 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.13 1.49 8.05 -2.39 -0.02 1.47 16 35 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.09 2.46 7.94 -2.39 -0.02 2.44 16 37 H 0.12 2.43 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -69.06 310.11 -1.77 -70.83 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -0.09 Total: 26.27 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 3.77 Total: -16.23 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -1.91 Total: -126.38 kcal Atomic # 8 Polarization: -102.15 SS G_CDS: -5.24 Total: -107.39 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 106.55 SS G_CDS: -0.33 Total: 106.22 kcal Total: -69.06 -1.77 -70.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595362273.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.959 kcal (2) G-P(sol) polarization free energy of solvation -69.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds