Wall clock time and date at job start Tue Mar 31 2020 00:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00221 * 2 1 4 4 N 1.46497 * 109.47453 * 125.00266 * 3 2 1 5 5 C 1.46503 * 119.99983 * 85.03099 * 4 3 2 6 6 C 1.50704 * 109.46541 * 96.70548 * 5 4 3 7 7 H 1.07995 * 120.00300 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99439 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00102 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99499 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47336 * 89.99742 * 10 8 6 12 12 H 1.48505 * 109.46939 * 209.99986 * 10 8 6 13 13 H 1.48497 * 109.47250 * 329.99223 * 10 8 6 14 14 C 1.34780 * 119.99900 * 265.03724 * 4 3 2 15 15 O 1.21515 * 119.99713 * 5.81253 * 14 4 3 16 16 C 1.48159 * 119.99931 * 185.81175 * 14 4 3 17 17 C 1.38975 * 119.66755 * 175.73630 * 16 14 4 18 18 C 1.39385 * 119.11128 * 179.97438 * 17 16 14 19 19 O 1.35752 * 120.77926 * 180.02562 * 18 17 16 20 20 C 1.38954 * 118.44281 * 359.97438 * 18 17 16 21 21 C 1.39000 * 119.24389 * 0.02562 * 20 18 17 22 22 O 1.35673 * 119.58005 * 180.02562 * 21 20 18 23 23 N 1.32025 * 120.83521 * 359.74304 * 21 20 18 24 24 H 1.07997 * 120.00204 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99270 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.99647 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47355 * 4.99807 * 3 2 1 28 28 H 1.09002 * 109.47055 * 245.00588 * 3 2 1 29 29 H 1.08996 * 109.47047 * 216.69747 * 5 4 3 30 30 H 1.08999 * 109.47047 * 336.70613 * 5 4 3 31 31 H 0.97001 * 119.99661 * 180.02562 * 9 8 6 32 32 H 1.08001 * 120.44163 * 359.97438 * 17 16 14 33 33 H 0.96699 * 113.99557 * 89.99352 * 19 18 17 34 34 H 1.07999 * 120.38258 * 180.02562 * 20 18 17 35 35 H 0.96699 * 113.99582 * 90.00347 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1313 5 6 4.3221 0.7273 1.0020 6 6 5.3288 1.7953 0.6600 7 1 5.0111 2.8215 0.5497 8 6 6.6555 1.4620 0.4871 9 7 7.0424 0.2122 0.6210 10 14 7.9036 2.7859 0.0639 11 1 8.4665 3.3536 1.3152 12 1 8.9976 2.1937 -0.7471 13 1 7.2388 3.8627 -0.7131 14 6 2.6278 1.9126 2.2912 15 8 1.4919 2.3196 2.4349 16 6 3.6104 2.0546 3.3910 17 6 3.2524 2.7331 4.5498 18 6 4.1857 2.8595 5.5774 19 8 3.8719 3.5148 6.7241 20 6 5.4444 2.2979 5.4010 21 6 5.7312 1.6334 4.2143 22 8 6.9578 1.0821 4.0350 23 7 4.8233 1.5272 3.2616 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 4.5995 0.2549 1.9443 30 1 4.3046 -0.0223 0.2109 31 1 7.9758 -0.0222 0.4996 32 1 2.2643 3.1568 4.6528 33 1 3.4937 2.9480 7.4101 34 1 6.1913 2.3767 6.1770 35 1 7.0251 0.1659 4.3368 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597683055.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:10 Heat of formation + Delta-G solvation = -29.690104 kcal Electronic energy + Delta-G solvation = -22038.209581 eV Core-core repulsion = 18618.044775 eV Total energy + Delta-G solvation = -3420.164807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45647 -38.81644 -37.67310 -35.97738 -35.48269 -33.38985 -32.01573 -30.83059 -30.00655 -27.30095 -26.12714 -23.71660 -22.77058 -22.66691 -20.20724 -19.28820 -18.11738 -17.36530 -16.83776 -16.44228 -15.89024 -15.73594 -15.47506 -15.04872 -14.55056 -14.22865 -14.12062 -13.73241 -13.11942 -12.95069 -12.75275 -12.23368 -12.05775 -11.66317 -11.27167 -11.09451 -11.00657 -10.79853 -10.73242 -10.62097 -10.10978 -9.67514 -9.50749 -9.23026 -9.09701 -8.64381 -8.49362 -8.07961 -7.65329 -5.95547 -3.92465 1.00158 1.40865 2.56496 3.18777 3.36046 3.42328 3.45535 3.71585 4.01353 4.25491 4.36080 4.51796 4.99509 5.19976 5.32614 5.33799 5.44200 5.55073 5.67570 5.76259 5.92472 6.04435 6.16466 6.26593 6.32994 6.60270 6.77362 6.93174 7.13552 7.50804 7.53574 7.74859 7.93382 8.01620 8.27477 8.33765 8.40234 8.88093 9.06213 9.66942 11.12864 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.010770 B = 0.010082 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.074661 B = 2776.552939 C = 4782.003167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C 0.140 3.860 4 N -0.569 5.569 5 C 0.231 3.769 6 C -0.501 4.501 7 H 0.048 0.952 8 C 0.079 3.921 9 N -0.882 5.882 10 Si 0.882 3.118 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.279 1.279 14 C 0.566 3.434 15 O -0.566 6.566 16 C 0.123 3.877 17 C -0.160 4.160 18 C 0.140 3.860 19 O -0.490 6.490 20 C -0.205 4.205 21 C 0.320 3.680 22 O -0.463 6.463 23 N -0.399 5.399 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.024 0.976 31 H 0.259 0.741 32 H 0.148 0.852 33 H 0.392 0.608 34 H 0.140 0.860 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.644 -1.331 8.274 10.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.175 4.175 3 C 0.017 3.983 4 N -0.297 5.297 5 C 0.113 3.887 6 C -0.540 4.540 7 H 0.066 0.934 8 C -0.124 4.124 9 N -0.521 5.521 10 Si 0.711 3.289 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.204 1.204 14 C 0.352 3.648 15 O -0.447 6.447 16 C -0.016 4.016 17 C -0.182 4.182 18 C 0.087 3.913 19 O -0.300 6.300 20 C -0.227 4.227 21 C 0.140 3.860 22 O -0.269 6.269 23 N -0.120 5.120 24 H 0.110 0.890 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.166 0.834 33 H 0.248 0.752 34 H 0.158 0.842 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -5.420 -0.673 7.023 8.897 hybrid contribution 0.692 0.365 0.924 1.211 sum -4.728 -0.307 7.947 9.253 Atomic orbital electron populations 1.23742 0.95831 1.01360 1.01808 1.23379 0.96083 0.99345 0.98719 1.20521 0.92420 0.95113 0.90274 1.48264 1.17618 1.53580 1.10245 1.20084 0.75295 0.93573 0.99795 1.21175 0.92574 0.93985 1.46314 0.93392 1.24639 0.97601 0.94929 0.95181 1.69879 1.16366 1.16435 1.49429 0.86753 0.81522 0.82339 0.78284 1.20692 1.21382 1.20395 1.17804 0.85811 0.78651 0.82511 1.90679 1.19651 1.52520 1.81860 1.20814 0.91118 0.96133 0.93567 1.22306 1.01471 1.00453 0.93966 1.18305 0.91913 0.93336 0.87701 1.84799 1.84292 1.37151 1.23782 1.22595 0.97883 1.02572 0.99665 1.19185 0.85902 0.93786 0.87149 1.84886 1.24030 1.31641 1.86314 1.68390 0.99580 1.17693 1.26324 0.88955 0.88639 0.87344 0.90311 0.89428 0.90263 0.95778 0.93164 0.83429 0.75158 0.84179 0.74846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 14.32 29.01 0.42 -2.32 16 2 C -0.16 -2.57 9.84 -36.03 -0.35 -2.92 16 3 C 0.14 2.61 5.83 -5.20 -0.03 2.58 16 4 N -0.57 -12.36 2.46 -177.43 -0.44 -12.80 16 5 C 0.23 5.59 4.78 -5.19 -0.02 5.56 16 6 C -0.50 -13.32 7.62 -34.44 -0.26 -13.58 16 7 H 0.05 1.34 7.81 -52.49 -0.41 0.93 16 8 C 0.08 2.13 5.46 -17.82 -0.10 2.03 16 9 N -0.88 -24.05 13.29 55.43 0.74 -23.32 16 10 Si 0.88 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.57 12.35 7.59 -12.18 -0.09 12.25 16 15 O -0.57 -12.70 15.88 5.35 0.09 -12.62 16 16 C 0.12 2.51 6.58 -83.06 -0.55 1.96 16 17 C -0.16 -2.78 9.59 -38.88 -0.37 -3.15 16 18 C 0.14 2.12 6.77 -38.89 -0.26 1.86 16 19 O -0.49 -6.01 13.54 -18.96 -0.26 -6.27 16 20 C -0.20 -3.17 10.00 -39.03 -0.39 -3.56 16 21 C 0.32 6.01 7.74 -17.19 -0.13 5.87 16 22 O -0.46 -8.49 13.56 -18.72 -0.25 -8.75 16 23 N -0.40 -8.50 4.83 -9.94 -0.05 -8.55 16 24 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 25 H 0.10 1.35 7.84 -52.48 -0.41 0.93 16 26 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 27 H 0.08 1.45 7.01 -51.93 -0.36 1.09 16 28 H 0.09 1.60 8.11 -51.93 -0.42 1.18 16 29 H 0.08 1.99 5.51 -51.93 -0.29 1.71 16 30 H 0.02 0.61 8.02 -51.93 -0.42 0.19 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.15 2.43 7.64 -52.49 -0.40 2.03 16 33 H 0.39 2.60 9.06 45.56 0.41 3.01 16 34 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.39 5.22 9.06 45.56 0.41 5.64 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -32.46 313.09 -4.92 -37.37 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -2.29 Total: 6.91 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -2.15 Total: 6.58 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.25 Total: -44.66 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.43 Total: -27.63 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.46 -4.92 -37.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597683055.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.684 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds