Wall clock time and date at job start Tue Mar 31 2020 00:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00221 * 2 1 4 4 N 1.46497 * 109.47453 * 125.00266 * 3 2 1 5 5 C 1.46503 * 119.99983 * 85.03099 * 4 3 2 6 6 C 1.50704 * 109.46541 * 96.70548 * 5 4 3 7 7 H 1.07995 * 120.00300 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99439 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00102 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99499 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47336 * 89.99742 * 10 8 6 12 12 H 1.48505 * 109.46939 * 209.99986 * 10 8 6 13 13 H 1.48497 * 109.47250 * 329.99223 * 10 8 6 14 14 C 1.34780 * 119.99900 * 265.03724 * 4 3 2 15 15 O 1.21515 * 119.99713 * 5.81253 * 14 4 3 16 16 C 1.48159 * 119.99931 * 185.81175 * 14 4 3 17 17 C 1.38975 * 119.66755 * 175.73630 * 16 14 4 18 18 C 1.39385 * 119.11128 * 179.97438 * 17 16 14 19 19 O 1.35752 * 120.77926 * 180.02562 * 18 17 16 20 20 C 1.38954 * 118.44281 * 359.97438 * 18 17 16 21 21 C 1.39000 * 119.24389 * 0.02562 * 20 18 17 22 22 O 1.35673 * 119.58005 * 180.02562 * 21 20 18 23 23 N 1.32025 * 120.83521 * 359.74304 * 21 20 18 24 24 H 1.07997 * 120.00204 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99270 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.99647 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47355 * 4.99807 * 3 2 1 28 28 H 1.09002 * 109.47055 * 245.00588 * 3 2 1 29 29 H 1.08996 * 109.47047 * 216.69747 * 5 4 3 30 30 H 1.08999 * 109.47047 * 336.70613 * 5 4 3 31 31 H 0.97001 * 119.99661 * 180.02562 * 9 8 6 32 32 H 1.08001 * 120.44163 * 359.97438 * 17 16 14 33 33 H 0.96699 * 113.99557 * 89.99352 * 19 18 17 34 34 H 1.07999 * 120.38258 * 180.02562 * 20 18 17 35 35 H 0.96699 * 113.99582 * 90.00347 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1313 5 6 4.3221 0.7273 1.0020 6 6 5.3288 1.7953 0.6600 7 1 5.0111 2.8215 0.5497 8 6 6.6555 1.4620 0.4871 9 7 7.0424 0.2122 0.6210 10 14 7.9036 2.7859 0.0639 11 1 8.4665 3.3536 1.3152 12 1 8.9976 2.1937 -0.7471 13 1 7.2388 3.8627 -0.7131 14 6 2.6278 1.9126 2.2912 15 8 1.4919 2.3196 2.4349 16 6 3.6104 2.0546 3.3910 17 6 3.2524 2.7331 4.5498 18 6 4.1857 2.8595 5.5774 19 8 3.8719 3.5148 6.7241 20 6 5.4444 2.2979 5.4010 21 6 5.7312 1.6334 4.2143 22 8 6.9578 1.0821 4.0350 23 7 4.8233 1.5272 3.2616 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 4.5995 0.2549 1.9443 30 1 4.3046 -0.0223 0.2109 31 1 7.9758 -0.0222 0.4996 32 1 2.2643 3.1568 4.6528 33 1 3.4937 2.9480 7.4101 34 1 6.1913 2.3767 6.1770 35 1 7.0251 0.1659 4.3368 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597683055.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:10 Heat of formation + Delta-G solvation = -55.103277 kcal Electronic energy + Delta-G solvation = -22039.311579 eV Core-core repulsion = 18618.044775 eV Total energy + Delta-G solvation = -3421.266805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.87705 -40.35368 -38.86586 -37.32414 -37.12672 -35.02347 -33.80949 -32.13621 -31.40253 -29.16752 -27.63531 -25.31266 -24.43674 -24.10182 -21.57251 -20.61413 -19.58753 -18.82676 -18.39114 -18.08600 -17.40149 -17.09513 -16.94615 -16.51771 -16.34365 -15.90303 -15.41369 -15.11893 -14.72880 -14.33554 -14.15703 -13.97317 -13.50765 -13.45062 -13.00874 -12.78415 -12.61413 -12.38882 -12.23032 -12.03180 -11.88544 -11.59606 -11.25190 -10.57654 -10.39979 -10.36798 -10.03709 -9.72051 -9.37869 -8.00769 -6.02673 -0.38539 0.13094 1.29783 1.37899 1.42302 1.46753 1.68699 2.27839 2.48478 2.64881 2.87195 3.07276 3.35571 3.52526 3.91438 4.01141 4.03542 4.21343 4.38414 4.49736 4.54275 4.72941 4.79601 4.96794 4.99603 5.05962 5.35410 5.56083 5.69230 5.84400 5.91176 5.94049 6.31636 6.53132 6.68764 6.72761 6.94699 7.02931 7.27688 7.59282 9.06509 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.010770 B = 0.010082 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.074661 B = 2776.552939 C = 4782.003167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.181 4.181 3 C 0.137 3.863 4 N -0.576 5.576 5 C 0.252 3.748 6 C -0.504 4.504 7 H 0.026 0.974 8 C 0.048 3.952 9 N -0.899 5.899 10 Si 0.926 3.074 11 H -0.287 1.287 12 H -0.280 1.280 13 H -0.282 1.282 14 C 0.559 3.441 15 O -0.579 6.579 16 C 0.096 3.904 17 C -0.158 4.158 18 C 0.164 3.836 19 O -0.487 6.487 20 C -0.186 4.186 21 C 0.306 3.694 22 O -0.481 6.481 23 N -0.439 5.439 24 H 0.120 0.880 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.155 0.845 33 H 0.421 0.579 34 H 0.174 0.826 35 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.011 -0.926 9.959 11.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.200 4.200 3 C 0.015 3.985 4 N -0.304 5.304 5 C 0.131 3.869 6 C -0.543 4.543 7 H 0.045 0.955 8 C -0.153 4.153 9 N -0.539 5.539 10 Si 0.754 3.246 11 H -0.214 1.214 12 H -0.205 1.205 13 H -0.207 1.207 14 C 0.347 3.653 15 O -0.462 6.462 16 C -0.042 4.042 17 C -0.180 4.180 18 C 0.111 3.889 19 O -0.301 6.301 20 C -0.208 4.208 21 C 0.125 3.875 22 O -0.289 6.289 23 N -0.160 5.160 24 H 0.138 0.862 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.024 0.976 31 H 0.069 0.931 32 H 0.173 0.827 33 H 0.283 0.717 34 H 0.191 0.809 35 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -5.809 -0.289 8.719 10.481 hybrid contribution 0.727 0.280 0.553 0.955 sum -5.083 -0.009 9.272 10.574 Atomic orbital electron populations 1.23988 0.94986 1.02853 0.98161 1.23195 0.96802 0.98000 1.02047 1.20627 0.92105 0.96587 0.89200 1.48271 1.17263 1.53618 1.11219 1.19672 0.76086 0.92516 0.98580 1.21162 0.93335 0.93312 1.46500 0.95526 1.25063 0.98642 0.96198 0.95373 1.69935 1.16536 1.17170 1.50216 0.86082 0.80173 0.80669 0.77685 1.21359 1.20492 1.20720 1.18147 0.86134 0.78163 0.82874 1.90641 1.20153 1.53138 1.82227 1.20702 0.90957 0.98205 0.94335 1.22402 1.02263 0.99839 0.93530 1.18171 0.91096 0.91542 0.88078 1.84751 1.84390 1.37566 1.23373 1.22768 0.98557 1.00582 0.98920 1.19419 0.85563 0.94638 0.87874 1.84834 1.24055 1.33234 1.86809 1.68109 1.00432 1.19163 1.28337 0.86239 0.88188 0.87579 0.90332 0.89954 0.90909 0.97581 0.93121 0.82749 0.71713 0.80900 0.72837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 14.32 67.78 0.97 -3.43 16 2 C -0.18 -5.95 9.84 25.64 0.25 -5.70 16 3 C 0.14 5.24 5.83 85.63 0.50 5.74 16 4 N -0.58 -25.73 2.46 -833.57 -2.05 -27.78 16 5 C 0.25 12.54 4.78 85.63 0.41 12.95 16 6 C -0.50 -27.43 7.62 25.60 0.20 -27.23 16 7 H 0.03 1.53 7.81 -2.91 -0.02 1.51 16 8 C 0.05 2.62 5.46 84.66 0.46 3.08 16 9 N -0.90 -49.47 13.29 21.45 0.28 -49.18 16 10 Si 0.93 44.82 29.54 68.60 2.03 46.85 16 11 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 14 C 0.56 24.80 7.59 86.88 0.66 25.46 16 15 O -0.58 -26.10 15.88 -3.76 -0.06 -26.16 16 16 C 0.10 3.94 6.58 41.80 0.28 4.21 16 17 C -0.16 -5.27 9.59 22.72 0.22 -5.05 16 18 C 0.16 4.48 6.77 22.72 0.15 4.63 16 19 O -0.49 -9.84 13.54 -90.77 -1.23 -11.07 16 20 C -0.19 -5.25 10.00 22.62 0.23 -5.02 16 21 C 0.31 11.19 7.74 84.85 0.66 11.84 16 22 O -0.48 -17.30 13.56 -89.90 -1.22 -18.52 16 23 N -0.44 -18.83 4.83 -298.36 -1.44 -20.27 16 24 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 25 H 0.10 2.64 7.84 -2.91 -0.02 2.62 16 26 H 0.11 3.51 8.06 -2.91 -0.02 3.48 16 27 H 0.08 2.95 7.01 -2.39 -0.02 2.94 16 28 H 0.08 3.14 8.11 -2.39 -0.02 3.12 16 29 H 0.07 3.78 5.51 -2.39 -0.01 3.77 16 30 H 0.01 0.33 8.02 -2.39 -0.02 0.31 16 31 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 32 H 0.15 4.84 7.64 -2.91 -0.02 4.82 16 33 H 0.42 3.55 9.06 -74.06 -0.67 2.87 16 34 H 0.17 3.70 8.06 -2.91 -0.02 3.67 16 35 H 0.41 10.69 9.06 -74.06 -0.67 10.02 16 Total: -1.00 -69.78 313.09 1.09 -68.69 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -0.20 Total: 15.97 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 4.98 Total: 21.47 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -3.21 Total: -97.24 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -2.51 Total: -55.74 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -69.78 1.09 -68.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597683055.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.583 kcal (2) G-P(sol) polarization free energy of solvation -69.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds