Wall clock time and date at job start Tue Mar 31 2020 00:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46877 * 2 1 4 4 C 1.50699 * 109.46934 * 240.00312 * 2 1 3 5 5 H 1.08006 * 119.99744 * 241.32016 * 4 2 1 6 6 C 1.37875 * 120.00378 * 61.31995 * 4 2 1 7 7 N 1.31511 * 120.00087 * 194.00401 * 6 4 2 8 8 Si 1.86806 * 119.99790 * 14.00692 * 6 4 2 9 9 H 1.48496 * 109.47134 * 84.54671 * 8 6 4 10 10 H 1.48496 * 109.46883 * 204.54408 * 8 6 4 11 11 H 1.48496 * 109.46978 * 324.54304 * 8 6 4 12 12 C 1.52999 * 109.47381 * 120.00057 * 2 1 3 13 13 S 1.81404 * 109.47000 * 300.00025 * 12 2 1 14 14 C 1.81401 * 102.99784 * 179.97438 * 13 12 2 15 15 C 1.50705 * 109.46651 * 180.02562 * 14 13 12 16 16 O 1.21245 * 120.00223 * 0.02562 * 15 14 13 17 17 C 1.47172 * 119.99657 * 180.02562 * 15 14 13 18 18 C 1.39844 * 120.17293 * 179.97438 * 17 15 14 19 19 C 1.37881 * 119.82710 * 179.97438 * 18 17 15 20 20 C 1.38404 * 120.17325 * 359.97438 * 19 18 17 21 21 C 1.38396 * 120.34805 * 0.04795 * 20 19 18 22 22 C 1.37891 * 120.17344 * 359.95361 * 21 20 19 23 23 H 1.09004 * 109.47015 * 309.41104 * 1 2 3 24 24 H 1.08994 * 109.47623 * 69.41109 * 1 2 3 25 25 H 1.09004 * 109.46807 * 189.41229 * 1 2 3 26 26 H 1.09005 * 109.47177 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47167 * 299.99972 * 3 2 1 28 28 H 1.08996 * 109.47072 * 60.00183 * 3 2 1 29 29 H 0.96999 * 119.99771 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47402 * 180.02562 * 12 2 1 31 31 H 1.08992 * 109.46945 * 59.99877 * 12 2 1 32 32 H 1.08995 * 109.46787 * 60.00288 * 14 13 12 33 33 H 1.08992 * 109.47154 * 300.00092 * 14 13 12 34 34 H 1.08004 * 120.08936 * 359.70287 * 18 17 15 35 35 H 1.08001 * 119.91600 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.82384 * 179.97438 * 20 19 18 37 37 H 1.08003 * 119.91731 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.09106 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6355 -1.6008 -1.1316 6 6 1.7218 -0.2236 -2.4826 7 7 1.9148 -0.9731 -3.5459 8 14 1.0272 1.5005 -2.6686 9 1 2.1413 2.4813 -2.7092 10 1 0.2462 1.5861 -3.9287 11 1 0.1418 1.8044 -1.5158 12 6 2.0401 -0.7212 1.2492 13 16 1.4354 0.1339 2.7304 14 6 2.1320 -0.8526 4.0840 15 6 1.7123 -0.2602 5.4047 16 8 1.0121 0.7292 5.4302 17 6 2.1525 -0.8829 6.6634 18 6 1.7657 -0.3361 7.8910 19 6 2.1818 -0.9256 9.0659 20 6 2.9798 -2.0559 9.0326 21 6 3.3672 -2.6029 7.8218 22 6 2.9594 -2.0250 6.6381 23 1 -0.3633 0.6525 0.7940 24 1 -0.3634 0.3614 -0.9619 25 1 -0.3633 -1.0139 0.1681 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6960 -0.6307 -4.4267 30 1 3.1300 -0.7208 1.2494 31 1 1.6767 -1.7488 1.2492 32 1 3.2197 -0.8496 4.0132 33 1 1.7661 -1.8767 4.0128 34 1 1.1463 0.5482 7.9187 35 1 1.8836 -0.5047 10.0148 36 1 3.3028 -2.5129 9.9564 37 1 3.9903 -3.4848 7.8039 38 1 3.2622 -2.4532 5.6939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601085546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:59 Heat of formation + Delta-G solvation = -0.268296 kcal Electronic energy + Delta-G solvation = -18488.749416 eV Core-core repulsion = 15616.153649 eV Total energy + Delta-G solvation = -2872.595767 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.15119 -38.30400 -36.34666 -32.29531 -31.82815 -31.30698 -29.59714 -26.89565 -26.21617 -24.87662 -24.05497 -22.74747 -20.25740 -19.13038 -17.62990 -16.12887 -16.08187 -16.02616 -15.44660 -15.39315 -15.21725 -14.65524 -13.99074 -13.82277 -13.70557 -13.09310 -13.02391 -12.99252 -12.62645 -12.45123 -12.03766 -11.90643 -11.55566 -11.44523 -11.19480 -10.70096 -10.20052 -10.05719 -9.93734 -9.88290 -9.60693 -9.35859 -9.31210 -8.86490 -8.62850 -8.41387 -7.15278 -6.13462 -4.10572 0.38403 1.01716 1.91345 2.21242 3.09605 3.30999 3.41108 3.43895 3.48780 3.81134 4.40475 4.45957 4.57738 4.68505 4.94076 5.03958 5.05608 5.18076 5.19256 5.29941 5.49373 5.62945 5.77490 5.82588 5.96892 6.05746 6.08111 6.21406 6.42409 6.51847 6.57463 6.63135 6.77708 6.85806 6.99837 7.27982 7.35495 7.49363 7.75134 8.45361 8.88700 9.51493 10.99419 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.045308 B = 0.003387 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.837450 B = 8265.587259 C = 8670.775971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.056 3.944 3 C -0.149 4.149 4 C -0.513 4.513 5 H 0.073 0.927 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.882 3.118 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.246 1.246 12 C -0.057 4.057 13 S -0.221 6.221 14 C -0.160 4.160 15 C 0.411 3.589 16 O -0.426 6.426 17 C -0.159 4.159 18 C -0.062 4.062 19 C -0.133 4.133 20 C -0.092 4.092 21 C -0.133 4.133 22 C -0.073 4.073 23 H 0.034 0.966 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.039 0.961 28 H 0.044 0.956 29 H 0.265 0.735 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.448 -2.547 23.514 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.054 3.946 3 C -0.206 4.206 4 C -0.552 4.552 5 H 0.092 0.908 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.172 1.172 12 C -0.205 4.205 13 S 0.007 5.993 14 C -0.308 4.308 15 C 0.285 3.715 16 O -0.299 6.299 17 C -0.161 4.161 18 C -0.080 4.080 19 C -0.151 4.151 20 C -0.110 4.110 21 C -0.151 4.151 22 C -0.091 4.091 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.152 0.848 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.427 -1.146 23.404 23.475 hybrid contribution 0.685 -0.419 -0.373 0.886 sum 2.112 -1.564 23.031 23.180 Atomic orbital electron populations 1.22298 0.97425 1.00093 1.00165 1.18277 0.92739 0.92024 0.91604 1.22389 1.00870 0.98200 0.99190 1.20769 1.34142 1.12205 0.88072 0.90842 1.24937 0.94556 0.97359 0.95704 1.69945 1.48364 1.35983 0.98736 0.87318 0.79594 0.85477 0.76123 1.21272 1.23401 1.17154 1.23712 1.02427 1.01151 0.93174 1.87352 1.70301 1.42289 0.99381 1.23922 1.05636 1.04590 0.96688 1.21809 0.77666 0.83229 0.88753 1.90559 1.28227 1.21985 1.89154 1.20464 1.02594 0.98547 0.94514 1.21456 0.96598 0.98752 0.91216 1.21170 0.99034 0.96659 0.98264 1.21441 0.96020 0.95294 0.98241 1.21173 1.00968 1.00675 0.92258 1.21536 0.94708 0.93763 0.99135 0.94665 0.92782 0.93592 0.93042 0.94228 0.93708 0.92560 0.90849 0.90743 0.87137 0.87122 0.84774 0.85356 0.85581 0.85273 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 7.41 37.16 0.28 -2.92 16 2 C 0.06 1.28 0.52 -155.66 -0.08 1.20 16 3 C -0.15 -3.34 7.46 37.16 0.28 -3.06 16 4 C -0.51 -13.95 8.62 -34.44 -0.30 -14.25 16 5 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 6 C 0.08 2.19 5.32 -17.82 -0.09 2.09 16 7 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 8 Si 0.88 21.98 22.79 -169.99 -3.87 18.11 16 9 H -0.29 -7.06 7.10 56.52 0.40 -6.65 16 10 H -0.31 -7.70 7.11 56.52 0.40 -7.30 16 11 H -0.25 -5.77 4.65 56.52 0.26 -5.50 16 12 C -0.06 -1.10 4.87 37.16 0.18 -0.92 16 13 S -0.22 -3.94 18.12 -107.50 -1.95 -5.89 16 14 C -0.16 -2.07 5.04 36.01 0.18 -1.89 16 15 C 0.41 5.50 7.14 -30.68 -0.22 5.28 16 16 O -0.43 -7.14 15.86 5.59 0.09 -7.05 16 17 C -0.16 -1.71 5.87 -105.06 -0.62 -2.33 16 18 C -0.06 -0.62 9.60 -39.11 -0.38 -0.99 16 19 C -0.13 -1.03 10.03 -39.65 -0.40 -1.43 16 20 C -0.09 -0.63 10.04 -39.46 -0.40 -1.02 16 21 C -0.13 -0.95 10.03 -39.65 -0.40 -1.35 16 22 C -0.07 -0.63 9.47 -39.10 -0.37 -1.00 16 23 H 0.03 0.74 7.29 -51.93 -0.38 0.36 16 24 H 0.05 1.27 4.30 -51.93 -0.22 1.04 16 25 H 0.04 0.99 8.12 -51.93 -0.42 0.57 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.04 0.92 2.25 -51.93 -0.12 0.81 16 28 H 0.04 0.93 6.91 -51.93 -0.36 0.57 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.11 1.21 8.09 -51.93 -0.42 0.79 16 33 H 0.11 1.22 8.09 -51.93 -0.42 0.80 16 34 H 0.13 1.34 7.65 -52.48 -0.40 0.94 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 38 H 0.13 0.92 7.05 -52.49 -0.37 0.54 16 LS Contribution 315.63 15.07 4.76 4.76 Total: -1.00 -31.86 315.63 -7.87 -39.73 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.34 Total: -0.88 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -2.33 Total: -22.59 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.77 Total: -26.19 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: 0.09 Total: -7.05 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -3.87 Total: 18.11 kcal Atomic # 16 Polarization: -3.94 SS G_CDS: -1.95 Total: -5.89 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.86 -7.87 -39.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601085546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.463 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds