Wall clock time and date at job start Tue Mar 31 2020 00:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46877 * 2 1 4 4 C 1.50699 * 109.46934 * 240.00312 * 2 1 3 5 5 H 1.08006 * 119.99744 * 241.32016 * 4 2 1 6 6 C 1.37875 * 120.00378 * 61.31995 * 4 2 1 7 7 N 1.31511 * 120.00087 * 194.00401 * 6 4 2 8 8 Si 1.86806 * 119.99790 * 14.00692 * 6 4 2 9 9 H 1.48496 * 109.47134 * 84.54671 * 8 6 4 10 10 H 1.48496 * 109.46883 * 204.54408 * 8 6 4 11 11 H 1.48496 * 109.46978 * 324.54304 * 8 6 4 12 12 C 1.52999 * 109.47381 * 120.00057 * 2 1 3 13 13 S 1.81404 * 109.47000 * 300.00025 * 12 2 1 14 14 C 1.81401 * 102.99784 * 179.97438 * 13 12 2 15 15 C 1.50705 * 109.46651 * 180.02562 * 14 13 12 16 16 O 1.21245 * 120.00223 * 0.02562 * 15 14 13 17 17 C 1.47172 * 119.99657 * 180.02562 * 15 14 13 18 18 C 1.39844 * 120.17293 * 179.97438 * 17 15 14 19 19 C 1.37881 * 119.82710 * 179.97438 * 18 17 15 20 20 C 1.38404 * 120.17325 * 359.97438 * 19 18 17 21 21 C 1.38396 * 120.34805 * 0.04795 * 20 19 18 22 22 C 1.37891 * 120.17344 * 359.95361 * 21 20 19 23 23 H 1.09004 * 109.47015 * 309.41104 * 1 2 3 24 24 H 1.08994 * 109.47623 * 69.41109 * 1 2 3 25 25 H 1.09004 * 109.46807 * 189.41229 * 1 2 3 26 26 H 1.09005 * 109.47177 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47167 * 299.99972 * 3 2 1 28 28 H 1.08996 * 109.47072 * 60.00183 * 3 2 1 29 29 H 0.96999 * 119.99771 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47402 * 180.02562 * 12 2 1 31 31 H 1.08992 * 109.46945 * 59.99877 * 12 2 1 32 32 H 1.08995 * 109.46787 * 60.00288 * 14 13 12 33 33 H 1.08992 * 109.47154 * 300.00092 * 14 13 12 34 34 H 1.08004 * 120.08936 * 359.70287 * 18 17 15 35 35 H 1.08001 * 119.91600 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.82384 * 179.97438 * 20 19 18 37 37 H 1.08003 * 119.91731 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.09106 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6355 -1.6008 -1.1316 6 6 1.7218 -0.2236 -2.4826 7 7 1.9148 -0.9731 -3.5459 8 14 1.0272 1.5005 -2.6686 9 1 2.1413 2.4813 -2.7092 10 1 0.2462 1.5861 -3.9287 11 1 0.1418 1.8044 -1.5158 12 6 2.0401 -0.7212 1.2492 13 16 1.4354 0.1339 2.7304 14 6 2.1320 -0.8526 4.0840 15 6 1.7123 -0.2602 5.4047 16 8 1.0121 0.7292 5.4302 17 6 2.1525 -0.8829 6.6634 18 6 1.7657 -0.3361 7.8910 19 6 2.1818 -0.9256 9.0659 20 6 2.9798 -2.0559 9.0326 21 6 3.3672 -2.6029 7.8218 22 6 2.9594 -2.0250 6.6381 23 1 -0.3633 0.6525 0.7940 24 1 -0.3634 0.3614 -0.9619 25 1 -0.3633 -1.0139 0.1681 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6960 -0.6307 -4.4267 30 1 3.1300 -0.7208 1.2494 31 1 1.6767 -1.7488 1.2492 32 1 3.2197 -0.8496 4.0132 33 1 1.7661 -1.8767 4.0128 34 1 1.1463 0.5482 7.9187 35 1 1.8836 -0.5047 10.0148 36 1 3.3028 -2.5129 9.9564 37 1 3.9903 -3.4848 7.8039 38 1 3.2622 -2.4532 5.6939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601085546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:59 Heat of formation + Delta-G solvation = -18.442829 kcal Electronic energy + Delta-G solvation = -18489.537523 eV Core-core repulsion = 15616.153649 eV Total energy + Delta-G solvation = -2873.383874 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00944 -39.12398 -38.18874 -33.96654 -33.11191 -31.91843 -30.50013 -28.51923 -28.00426 -26.99523 -24.81007 -23.36199 -21.40174 -20.71131 -18.41731 -18.13812 -17.43525 -17.19788 -16.72669 -16.46737 -16.18029 -15.40965 -15.31599 -14.99420 -14.85718 -14.79692 -14.55633 -14.31408 -13.92715 -13.77348 -13.41755 -13.17779 -12.84729 -12.61720 -12.56928 -12.07349 -12.02403 -11.95901 -11.73721 -11.32044 -10.92900 -10.72076 -10.47769 -10.41862 -9.97025 -9.95637 -8.54932 -8.32678 -6.32040 -0.36331 0.42222 0.63234 1.33009 1.35906 1.38148 1.46704 1.71768 2.32553 2.84154 2.86690 3.04140 3.81761 4.01707 4.05154 4.10276 4.13284 4.20563 4.23773 4.35362 4.47213 4.48065 4.54684 4.71861 4.81898 4.87712 4.89131 4.96527 5.06979 5.09839 5.21941 5.34866 5.45265 5.46751 5.50245 5.67122 5.74516 5.94872 6.29287 6.38371 6.71178 7.33118 8.83691 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.045308 B = 0.003387 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.837450 B = 8265.587259 C = 8670.775971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.049 3.951 3 C -0.147 4.147 4 C -0.509 4.509 5 H 0.042 0.958 6 C 0.026 3.974 7 N -0.941 5.941 8 Si 0.933 3.067 9 H -0.281 1.281 10 H -0.312 1.312 11 H -0.222 1.222 12 C -0.048 4.048 13 S -0.255 6.255 14 C -0.148 4.148 15 C 0.414 3.586 16 O -0.473 6.473 17 C -0.182 4.182 18 C -0.080 4.080 19 C -0.137 4.137 20 C -0.084 4.084 21 C -0.134 4.134 22 C -0.074 4.074 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.265 0.735 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -2.989 26.408 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.048 3.952 3 C -0.204 4.204 4 C -0.548 4.548 5 H 0.060 0.940 6 C -0.173 4.173 7 N -0.580 5.580 8 Si 0.763 3.237 9 H -0.209 1.209 10 H -0.241 1.241 11 H -0.146 1.146 12 C -0.196 4.196 13 S -0.027 6.027 14 C -0.296 4.296 15 C 0.292 3.708 16 O -0.350 6.350 17 C -0.185 4.185 18 C -0.098 4.098 19 C -0.155 4.155 20 C -0.102 4.102 21 C -0.152 4.152 22 C -0.092 4.092 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.047 -1.594 26.318 26.445 hybrid contribution 0.580 -0.427 -1.079 1.297 sum 2.626 -2.021 25.239 25.455 Atomic orbital electron populations 1.22218 0.96894 1.00578 0.99899 1.18247 0.93115 0.92464 0.91422 1.22328 1.01070 0.97536 0.99450 1.21068 1.32681 1.11148 0.89933 0.93998 1.25662 0.95372 1.00694 0.95533 1.70068 1.50764 1.37881 0.99324 0.86483 0.79448 0.81278 0.76445 1.20872 1.24110 1.14647 1.23393 1.02517 1.00783 0.92917 1.87402 1.71103 1.43679 1.00544 1.24047 1.06891 1.04604 0.94029 1.22155 0.76425 0.82389 0.89781 1.90547 1.30647 1.24072 1.89700 1.20323 1.04747 1.00073 0.93312 1.21537 0.97230 0.98963 0.92098 1.21449 0.98840 0.96930 0.98238 1.21877 0.94431 0.94352 0.99553 1.21563 1.00658 1.01243 0.91749 1.21775 0.93902 0.92852 1.00708 0.93176 0.94064 0.93407 0.92821 0.95161 0.92059 0.92614 0.90457 0.90645 0.84618 0.84691 0.86030 0.83292 0.82532 0.82538 0.83231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 7.41 71.98 0.53 -5.51 16 2 C 0.05 2.22 0.52 -52.93 -0.03 2.20 16 3 C -0.15 -6.33 7.46 71.98 0.54 -5.79 16 4 C -0.51 -27.99 8.62 25.60 0.22 -27.76 16 5 H 0.04 2.51 7.99 -2.91 -0.02 2.48 16 6 C 0.03 1.47 5.32 84.65 0.45 1.92 16 7 N -0.94 -58.21 13.96 21.45 0.30 -57.91 16 8 Si 0.93 45.32 22.79 68.60 1.56 46.88 16 9 H -0.28 -13.39 7.10 99.48 0.71 -12.68 16 10 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 11 H -0.22 -9.88 4.65 99.48 0.46 -9.42 16 12 C -0.05 -1.80 4.87 71.98 0.35 -1.45 16 13 S -0.26 -8.70 18.12 -56.49 -1.02 -9.72 16 14 C -0.15 -3.49 5.04 71.24 0.36 -3.14 16 15 C 0.41 10.68 7.14 28.04 0.20 10.88 16 16 O -0.47 -15.94 15.86 -2.92 -0.05 -15.99 16 17 C -0.18 -3.66 5.87 -20.15 -0.12 -3.78 16 18 C -0.08 -1.52 9.60 22.57 0.22 -1.30 16 19 C -0.14 -1.77 10.03 22.22 0.22 -1.55 16 20 C -0.08 -0.83 10.04 22.35 0.22 -0.60 16 21 C -0.13 -1.40 10.03 22.23 0.22 -1.18 16 22 C -0.07 -1.05 9.47 22.58 0.21 -0.84 16 23 H 0.05 2.03 7.29 -2.39 -0.02 2.01 16 24 H 0.04 1.87 4.30 -2.39 -0.01 1.86 16 25 H 0.05 2.02 8.12 -2.38 -0.02 2.00 16 26 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 27 H 0.03 1.35 2.25 -2.38 -0.01 1.35 16 28 H 0.06 2.43 6.91 -2.39 -0.02 2.42 16 29 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.14 2.56 8.09 -2.39 -0.02 2.54 16 33 H 0.14 2.57 8.09 -2.39 -0.02 2.55 16 34 H 0.12 2.51 7.65 -2.91 -0.02 2.49 16 35 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 37 H 0.16 0.78 8.06 -2.91 -0.02 0.75 16 38 H 0.15 1.51 7.05 -2.91 -0.02 1.49 16 Total: -1.00 -70.43 315.63 5.20 -65.23 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.80 Total: 9.43 kcal Atomic # 6 Polarization: -41.52 SS G_CDS: 3.61 Total: -37.92 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.30 Total: -57.91 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.05 Total: -15.99 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.56 Total: 46.88 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.02 Total: -9.72 kcal Total: -70.43 5.20 -65.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601085546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.782 kcal (2) G-P(sol) polarization free energy of solvation -70.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds