Wall clock time and date at job start Tue Mar 31 2020 01:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46987 * 2 1 4 4 C 1.50700 * 109.46839 * 240.00225 * 2 1 3 5 5 H 1.07999 * 119.99930 * 240.00005 * 4 2 1 6 6 C 1.37879 * 120.00144 * 59.99509 * 4 2 1 7 7 N 1.31514 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99905 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47203 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46985 * 120.00190 * 8 6 4 11 11 H 1.48498 * 109.47290 * 240.00266 * 8 6 4 12 12 N 1.46500 * 109.47152 * 120.00024 * 2 1 3 13 13 C 1.46494 * 119.99823 * 60.00004 * 12 2 1 14 14 S 1.65596 * 119.99557 * 239.99577 * 12 2 1 15 15 O 1.42094 * 106.40722 * 336.46169 * 14 12 2 16 16 O 1.42103 * 106.40010 * 203.53865 * 14 12 2 17 17 N 1.65601 * 107.21743 * 90.00696 * 14 12 2 18 18 C 1.46500 * 120.00475 * 64.99468 * 17 14 12 19 19 H 1.09002 * 112.84754 * 13.80589 * 18 17 14 20 20 C 1.53776 * 113.61821 * 145.00251 * 18 17 14 21 21 C 1.53774 * 87.08408 * 89.20147 * 20 18 17 22 22 H 1.08995 * 113.62199 * 140.06511 * 21 20 18 23 23 O 1.42903 * 113.61673 * 270.88945 * 21 20 18 24 24 C 1.53777 * 87.08184 * 25.43089 * 21 20 18 25 25 H 1.08996 * 109.47528 * 59.99701 * 1 2 3 26 26 H 1.09001 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46819 * 299.99795 * 1 2 3 28 28 H 0.97004 * 119.99931 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47275 * 269.99424 * 13 12 2 30 30 H 1.09003 * 109.47372 * 29.99940 * 13 12 2 31 31 H 1.09003 * 109.47057 * 149.99701 * 13 12 2 32 32 H 0.97006 * 119.99758 * 244.99661 * 17 14 12 33 33 H 1.09002 * 113.61135 * 334.65240 * 20 18 17 34 34 H 1.09001 * 113.69206 * 203.76336 * 20 18 17 35 35 H 0.96700 * 114.00311 * 179.97438 * 23 21 20 36 36 H 1.09007 * 113.61025 * 89.11391 * 24 21 20 37 37 H 1.08997 * 113.62410 * 220.02130 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1676 -1.5866 -4.8165 11 1 3.1470 -0.1858 -4.8162 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4279 14 16 2.9705 0.1142 2.2861 15 8 3.5795 1.1829 1.5747 16 8 3.7119 -0.8789 2.9813 17 7 1.9609 0.8090 3.3997 18 6 1.1512 -0.0352 4.2817 19 1 1.4698 -1.0776 4.2795 20 6 0.9638 0.5487 5.6919 21 6 -0.2837 1.2626 5.1453 22 1 -1.1230 1.2692 5.8407 23 8 -0.0098 2.5522 4.5938 24 6 -0.3639 0.1462 4.0907 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7093 1.1618 -3.4844 29 1 0.7377 -2.1444 1.9994 30 1 1.5295 -2.5968 0.4707 31 1 2.4630 -2.5819 1.9863 32 1 1.9056 1.7751 3.4681 33 1 1.7603 1.2297 5.9919 34 1 0.7403 -0.2015 6.4504 35 1 -0.7905 3.0060 4.2480 36 1 -0.9505 -0.7151 4.4105 37 1 -0.6393 0.5021 3.0980 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601433976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:22 Heat of formation + Delta-G solvation = -100.862619 kcal Electronic energy + Delta-G solvation = -21415.611694 eV Core-core repulsion = 18127.804567 eV Total energy + Delta-G solvation = -3287.807127 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.59750 -36.58888 -36.10906 -35.15826 -35.15208 -32.55177 -31.92058 -29.07476 -25.81951 -25.46156 -25.14346 -24.16048 -20.77375 -19.82713 -18.84640 -17.63349 -16.99308 -16.77820 -16.29310 -15.72597 -15.20387 -14.97296 -14.42829 -14.12192 -13.40207 -13.28917 -12.98402 -12.78928 -12.64470 -12.01115 -11.85349 -11.76829 -11.56657 -11.42255 -11.35939 -11.21025 -11.15419 -10.88823 -10.81207 -10.52701 -10.37062 -10.19979 -10.03531 -9.71821 -9.27495 -9.12630 -8.44145 -7.92954 -6.06024 -4.12247 1.29495 3.28516 3.36776 3.40730 3.53038 3.95523 4.23721 4.41672 4.46057 4.65433 4.79629 4.96448 5.07248 5.25822 5.41376 5.54825 5.61380 5.76587 5.77506 5.97194 6.04394 6.12191 6.32526 6.46795 6.69325 6.82750 6.86675 7.06835 7.32858 7.54763 7.59176 7.66294 7.82139 8.07255 8.29873 8.90174 9.53342 10.99705 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026140 B = 0.006046 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.903268 B = 4630.102235 C = 5001.944848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.269 3.731 3 H 0.058 0.942 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.988 5.988 13 C 0.096 3.904 14 S 2.780 3.220 15 O -0.975 6.975 16 O -1.000 7.000 17 N -1.108 6.108 18 C 0.141 3.859 19 H 0.099 0.901 20 C -0.143 4.143 21 C 0.080 3.920 22 H 0.065 0.935 23 O -0.550 6.550 24 C -0.191 4.191 25 H 0.091 0.909 26 H 0.031 0.969 27 H 0.010 0.990 28 H 0.262 0.738 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.418 0.582 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.382 0.618 36 H 0.094 0.906 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.842 -1.189 14.527 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.831 5.831 13 C -0.051 4.051 14 S 2.789 3.211 15 O -0.959 6.959 16 O -0.983 6.983 17 N -0.866 5.866 18 C 0.031 3.969 19 H 0.117 0.883 20 C -0.182 4.182 21 C 0.021 3.979 22 H 0.083 0.917 23 O -0.356 6.356 24 C -0.231 4.231 25 H 0.109 0.891 26 H 0.050 0.950 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.253 0.747 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.230 0.770 36 H 0.113 0.887 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.314 -1.367 14.542 15.230 hybrid contribution -0.886 0.078 -1.053 1.379 sum -5.200 -1.289 13.489 14.514 Atomic orbital electron populations 1.22098 0.98284 0.99582 1.00404 1.18704 0.91250 0.93007 0.80455 0.92428 1.21391 1.31420 1.12972 0.90102 0.91880 1.24911 0.94989 0.95024 0.99008 1.69874 1.36688 1.22725 1.23619 0.86445 0.78576 0.79669 0.82730 1.19739 1.21037 1.20911 1.57636 1.69855 1.19770 1.35803 1.21304 0.98607 0.82534 1.02622 1.01897 0.73664 0.73120 0.72440 1.93611 1.74451 1.55987 1.71879 1.93520 1.69361 1.60894 1.74529 1.55992 1.60994 1.17681 1.51957 1.21348 0.90928 0.94290 0.90284 0.88315 1.23451 0.98049 0.99687 0.97034 1.22695 0.97409 0.83099 0.94704 0.91730 1.86411 1.38105 1.30095 1.80962 1.24209 0.97586 0.99775 1.01520 0.89085 0.94955 0.97124 0.92798 0.94564 0.89906 0.92012 0.74712 0.89980 0.87926 0.77021 0.88728 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.97 37.16 0.33 -2.90 16 2 C 0.27 6.59 2.62 -69.08 -0.18 6.40 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 4 C -0.52 -14.01 7.99 -34.44 -0.28 -14.28 16 5 H 0.06 1.70 7.33 -52.49 -0.38 1.31 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.99 -20.52 3.12 -115.85 -0.36 -20.88 16 13 C 0.10 1.69 9.65 59.84 0.58 2.27 16 14 S 2.78 55.96 6.11 -107.50 -0.66 55.31 16 15 O -0.98 -23.52 16.70 -57.17 -0.95 -24.48 16 16 O -1.00 -21.12 16.26 -57.17 -0.93 -22.05 16 17 N -1.11 -17.52 5.74 -4.20 -0.02 -17.54 16 18 C 0.14 1.80 4.53 -67.12 -0.30 1.50 16 19 H 0.10 1.24 7.77 -51.93 -0.40 0.83 16 20 C -0.14 -1.47 7.70 -25.93 -0.20 -1.67 16 21 C 0.08 0.79 5.28 -25.92 -0.14 0.65 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 23 O -0.55 -5.99 12.18 -35.23 -0.43 -6.42 16 24 C -0.19 -2.07 7.71 -25.92 -0.20 -2.27 16 25 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 26 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 27 H 0.01 0.20 7.48 -51.93 -0.39 -0.19 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.54 7.02 -51.93 -0.36 1.17 16 31 H 0.06 1.03 7.02 -51.93 -0.36 0.66 16 32 H 0.42 6.45 7.54 -34.47 -0.26 6.19 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.38 2.75 9.12 45.56 0.42 3.16 16 36 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 37 H 0.09 1.12 7.48 -51.93 -0.39 0.73 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -33.19 312.48 -7.98 -41.17 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.46 Total: 6.93 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.48 Total: -8.69 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.24 Total: -62.64 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -2.31 Total: -52.95 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 55.96 SS G_CDS: -0.66 Total: 55.31 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.19 -7.98 -41.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601433976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.689 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds