Wall clock time and date at job start Tue Mar 31 2020 01:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46987 * 2 1 4 4 C 1.50700 * 109.46839 * 240.00225 * 2 1 3 5 5 H 1.07999 * 119.99930 * 240.00005 * 4 2 1 6 6 C 1.37879 * 120.00144 * 59.99509 * 4 2 1 7 7 N 1.31514 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99905 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47203 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46985 * 120.00190 * 8 6 4 11 11 H 1.48498 * 109.47290 * 240.00266 * 8 6 4 12 12 N 1.46500 * 109.47152 * 120.00024 * 2 1 3 13 13 C 1.46494 * 119.99823 * 60.00004 * 12 2 1 14 14 S 1.65596 * 119.99557 * 239.99577 * 12 2 1 15 15 O 1.42094 * 106.40722 * 336.46169 * 14 12 2 16 16 O 1.42103 * 106.40010 * 203.53865 * 14 12 2 17 17 N 1.65601 * 107.21743 * 90.00696 * 14 12 2 18 18 C 1.46500 * 120.00475 * 64.99468 * 17 14 12 19 19 H 1.09002 * 112.84754 * 13.80589 * 18 17 14 20 20 C 1.53776 * 113.61821 * 145.00251 * 18 17 14 21 21 C 1.53774 * 87.08408 * 89.20147 * 20 18 17 22 22 H 1.08995 * 113.62199 * 140.06511 * 21 20 18 23 23 O 1.42903 * 113.61673 * 270.88945 * 21 20 18 24 24 C 1.53777 * 87.08184 * 25.43089 * 21 20 18 25 25 H 1.08996 * 109.47528 * 59.99701 * 1 2 3 26 26 H 1.09001 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46819 * 299.99795 * 1 2 3 28 28 H 0.97004 * 119.99931 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47275 * 269.99424 * 13 12 2 30 30 H 1.09003 * 109.47372 * 29.99940 * 13 12 2 31 31 H 1.09003 * 109.47057 * 149.99701 * 13 12 2 32 32 H 0.97006 * 119.99758 * 244.99661 * 17 14 12 33 33 H 1.09002 * 113.61135 * 334.65240 * 20 18 17 34 34 H 1.09001 * 113.69206 * 203.76336 * 20 18 17 35 35 H 0.96700 * 114.00311 * 179.97438 * 23 21 20 36 36 H 1.09007 * 113.61025 * 89.11391 * 24 21 20 37 37 H 1.08997 * 113.62410 * 220.02130 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1676 -1.5866 -4.8165 11 1 3.1470 -0.1858 -4.8162 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4279 14 16 2.9705 0.1142 2.2861 15 8 3.5795 1.1829 1.5747 16 8 3.7119 -0.8789 2.9813 17 7 1.9609 0.8090 3.3997 18 6 1.1512 -0.0352 4.2817 19 1 1.4698 -1.0776 4.2795 20 6 0.9638 0.5487 5.6919 21 6 -0.2837 1.2626 5.1453 22 1 -1.1230 1.2692 5.8407 23 8 -0.0098 2.5522 4.5938 24 6 -0.3639 0.1462 4.0907 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7093 1.1618 -3.4844 29 1 0.7377 -2.1444 1.9994 30 1 1.5295 -2.5968 0.4707 31 1 2.4630 -2.5819 1.9863 32 1 1.9056 1.7751 3.4681 33 1 1.7603 1.2297 5.9919 34 1 0.7403 -0.2015 6.4504 35 1 -0.7905 3.0060 4.2480 36 1 -0.9505 -0.7151 4.4105 37 1 -0.6393 0.5021 3.0980 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601433976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:21 Heat of formation + Delta-G solvation = -128.705638 kcal Electronic energy + Delta-G solvation = -21416.819058 eV Core-core repulsion = 18127.804567 eV Total energy + Delta-G solvation = -3289.014491 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45541 -38.30737 -37.86068 -36.88599 -36.04489 -34.51225 -33.06846 -30.90566 -27.25336 -26.97816 -26.57153 -25.07695 -22.60491 -20.81050 -20.23426 -19.01361 -18.57941 -18.24119 -17.81902 -17.14056 -16.77104 -16.14376 -15.89592 -15.18949 -15.06270 -14.84269 -14.41777 -13.91363 -13.83130 -13.70530 -13.46168 -13.17862 -13.16174 -13.00113 -12.97803 -12.72781 -12.60908 -12.45659 -12.24073 -12.21322 -12.09790 -11.91592 -11.30270 -11.15239 -10.52204 -10.50396 -10.30587 -9.62558 -8.11626 -6.25024 -0.29234 1.41226 1.44269 1.54744 2.05828 2.43469 2.64811 3.16734 3.27934 3.45061 3.66340 3.81076 3.98629 4.15603 4.20240 4.38807 4.76494 4.78959 4.81958 4.86671 4.93811 5.02238 5.04628 5.13029 5.17496 5.25353 5.29440 5.48873 5.62143 5.72152 5.89346 6.11158 6.26273 6.31363 6.83081 6.97151 7.43800 8.92765 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026140 B = 0.006046 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.903268 B = 4630.102235 C = 5001.944848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.275 3.725 3 H 0.020 0.980 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.957 3.043 9 H -0.270 1.270 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.994 5.994 13 C 0.091 3.909 14 S 2.796 3.204 15 O -1.023 7.023 16 O -1.011 7.011 17 N -1.097 6.097 18 C 0.113 3.887 19 H 0.102 0.898 20 C -0.137 4.137 21 C 0.082 3.918 22 H 0.095 0.905 23 O -0.574 6.574 24 C -0.184 4.184 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.034 0.966 28 H 0.264 0.736 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.420 0.580 33 H 0.069 0.931 34 H 0.135 0.865 35 H 0.396 0.604 36 H 0.123 0.877 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.174 -2.332 15.947 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.170 3.830 3 H 0.038 0.962 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.782 3.218 9 H -0.194 1.194 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.836 5.836 13 C -0.054 4.054 14 S 2.805 3.195 15 O -1.007 7.007 16 O -0.994 6.994 17 N -0.859 5.859 18 C 0.005 3.995 19 H 0.120 0.880 20 C -0.176 4.176 21 C 0.023 3.977 22 H 0.113 0.887 23 O -0.382 6.382 24 C -0.224 4.224 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.256 0.744 33 H 0.087 0.913 34 H 0.153 0.847 35 H 0.246 0.754 36 H 0.141 0.859 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.660 -2.528 15.973 17.134 hybrid contribution -0.474 0.438 -1.397 1.539 sum -6.134 -2.090 14.576 15.951 Atomic orbital electron populations 1.21863 0.96598 1.00116 1.00251 1.18365 0.92370 0.91114 0.81104 0.96245 1.21705 1.31524 1.13014 0.91521 0.92469 1.25648 0.95238 0.95733 1.01696 1.69990 1.37407 1.23702 1.24260 0.85532 0.78267 0.78551 0.79415 1.19412 1.19884 1.21131 1.57485 1.69823 1.21081 1.35166 1.21496 1.00597 0.80640 1.02679 1.01174 0.73691 0.72261 0.72373 1.93540 1.76141 1.57577 1.73442 1.93495 1.70058 1.61303 1.74573 1.55587 1.61037 1.17933 1.51299 1.21832 0.91945 0.94109 0.91588 0.87984 1.23540 0.97964 1.00119 0.95964 1.22798 0.98024 0.82263 0.94581 0.88685 1.86374 1.39694 1.30855 1.81252 1.24226 0.95903 1.01319 1.00922 0.91780 0.93911 0.94664 0.92669 0.91146 0.91047 0.91105 0.74392 0.91251 0.84658 0.75399 0.85902 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.97 71.98 0.65 -5.08 16 2 C 0.27 13.65 2.62 44.25 0.12 13.76 16 3 H 0.02 1.12 6.91 -2.38 -0.02 1.11 16 4 C -0.54 -29.39 7.99 25.60 0.20 -29.18 16 5 H 0.06 3.11 7.33 -2.91 -0.02 3.09 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.91 -51.73 11.32 21.45 0.24 -51.49 16 8 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 12 N -0.99 -41.07 3.12 -520.44 -1.62 -42.69 16 13 C 0.09 3.09 9.65 127.77 1.23 4.33 16 14 S 2.80 113.20 6.11 -56.49 -0.35 112.85 16 15 O -1.02 -51.02 16.70 -128.00 -2.14 -53.16 16 16 O -1.01 -42.29 16.26 -128.00 -2.08 -44.37 16 17 N -1.10 -33.95 5.74 -167.20 -0.96 -34.91 16 18 C 0.11 2.64 4.53 45.52 0.21 2.84 16 19 H 0.10 2.29 7.77 -2.39 -0.02 2.27 16 20 C -0.14 -2.39 7.70 31.12 0.24 -2.15 16 21 C 0.08 1.34 5.28 31.12 0.16 1.51 16 22 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 23 O -0.57 -11.44 12.18 -148.98 -1.81 -13.25 16 24 C -0.18 -3.42 7.71 31.12 0.24 -3.18 16 25 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 26 H 0.04 1.76 7.67 -2.39 -0.02 1.74 16 27 H 0.03 1.34 7.48 -2.38 -0.02 1.33 16 28 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 30 H 0.07 2.58 7.02 -2.39 -0.02 2.56 16 31 H 0.07 2.25 7.02 -2.39 -0.02 2.24 16 32 H 0.42 12.90 7.54 -96.74 -0.73 12.17 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.40 5.02 9.12 -74.06 -0.68 4.34 16 36 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.07 1.54 7.48 -2.39 -0.02 1.52 16 Total: -1.00 -72.30 312.48 -3.51 -75.80 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.31 Total: 21.42 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 3.50 Total: -15.80 kcal Atomic # 7 Polarization: -126.75 SS G_CDS: -2.34 Total: -129.09 kcal Atomic # 8 Polarization: -104.75 SS G_CDS: -6.03 Total: -110.79 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 113.20 SS G_CDS: -0.35 Total: 112.85 kcal Total: -72.30 -3.51 -75.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601433976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.901 kcal (2) G-P(sol) polarization free energy of solvation -72.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds