Wall clock time and date at job start Tue Mar 31 2020 01:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46684 * 2 1 4 4 C 1.50698 * 109.47284 * 120.00056 * 2 1 3 5 5 H 1.08003 * 120.00192 * 119.99569 * 4 2 1 6 6 C 1.37880 * 119.99984 * 300.00488 * 4 2 1 7 7 N 1.31516 * 119.99939 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00171 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46747 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47042 * 119.99425 * 8 6 4 11 11 H 1.48488 * 109.47332 * 239.99795 * 8 6 4 12 12 N 1.46505 * 109.47073 * 239.99991 * 2 1 3 13 13 C 1.46494 * 120.00309 * 300.00021 * 12 2 1 14 14 S 1.65605 * 119.99527 * 119.99987 * 12 2 1 15 15 O 1.42096 * 106.40590 * 336.45948 * 14 12 2 16 16 O 1.42108 * 106.39755 * 203.53861 * 14 12 2 17 17 N 1.65597 * 107.21939 * 90.00151 * 14 12 2 18 18 C 1.46499 * 119.99926 * 64.71969 * 17 14 12 19 19 H 1.08997 * 112.85367 * 346.47255 * 18 17 14 20 20 C 1.53774 * 113.61461 * 117.78216 * 18 17 14 21 21 C 1.53779 * 87.08351 * 89.11806 * 20 18 17 22 22 H 1.08997 * 113.61725 * 139.98943 * 21 20 18 23 23 O 1.42904 * 113.68531 * 270.87440 * 21 20 18 24 24 C 1.53777 * 87.08017 * 25.43152 * 21 20 18 25 25 H 1.08994 * 109.47426 * 300.00017 * 1 2 3 26 26 H 1.09001 * 109.47147 * 59.99968 * 1 2 3 27 27 H 1.09006 * 109.47307 * 179.97438 * 1 2 3 28 28 H 0.96998 * 119.99880 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47247 * 270.00097 * 13 12 2 30 30 H 1.09005 * 109.46794 * 30.00043 * 13 12 2 31 31 H 1.08998 * 109.47246 * 150.00145 * 13 12 2 32 32 H 0.97001 * 120.00224 * 245.00182 * 17 14 12 33 33 H 1.09001 * 113.61629 * 203.66632 * 20 18 17 34 34 H 1.09000 * 113.61594 * 334.56468 * 20 18 17 35 35 H 0.96702 * 113.99720 * 277.53097 * 23 21 20 36 36 H 1.09002 * 113.61093 * 220.02028 * 24 21 20 37 37 H 1.09003 * 113.68976 * 89.13025 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1455 -2.2877 3.6037 10 1 3.1466 -0.1873 4.8165 11 1 1.1661 -1.5867 4.8160 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2862 15 8 2.6904 1.4973 -2.1193 16 8 2.8227 -0.5645 -3.5259 17 7 4.5437 -0.1041 -1.8181 18 6 5.1339 -1.4448 -1.8358 19 1 4.3896 -2.2336 -1.9451 20 6 6.3245 -1.5811 -2.7994 21 6 7.2209 -1.1441 -1.6288 22 1 8.1622 -1.6906 -1.5720 23 8 7.3945 0.2713 -1.5359 24 6 6.1318 -1.6939 -0.6926 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7094 1.1617 3.4844 29 1 2.4157 -2.7377 -0.9718 30 1 0.6904 -2.3001 -0.9847 31 1 1.6239 -2.2852 -2.5003 32 1 5.0733 0.6551 -1.5282 33 1 6.5047 -2.6043 -3.1290 34 1 6.3034 -0.8676 -3.6232 35 1 8.0782 0.6230 -2.1224 36 1 5.9551 -1.0713 0.1846 37 1 6.2582 -2.7479 -0.4451 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601433977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:23 Heat of formation + Delta-G solvation = -127.766158 kcal Electronic energy + Delta-G solvation = -21426.271515 eV Core-core repulsion = 18137.297763 eV Total energy + Delta-G solvation = -3288.973752 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.46154 -38.30485 -37.88540 -36.89855 -36.07070 -34.49903 -33.06306 -30.91324 -27.30293 -26.96384 -26.58728 -25.08939 -22.59692 -20.83916 -20.28442 -18.93541 -18.52010 -18.23398 -17.86585 -17.21512 -16.74405 -16.15610 -15.88951 -15.29018 -14.95051 -14.81141 -14.63296 -13.99987 -13.74189 -13.63160 -13.45907 -13.22111 -13.17293 -12.98812 -12.92344 -12.76063 -12.63430 -12.45924 -12.32870 -12.19898 -12.12912 -11.85612 -11.29923 -11.15037 -10.53032 -10.49853 -10.30039 -9.63266 -8.07884 -6.22382 -0.26609 1.44573 1.46866 1.57206 2.01705 2.46523 2.62534 3.20648 3.27769 3.45790 3.63168 3.83590 3.95767 4.11804 4.17302 4.37631 4.73615 4.81058 4.81898 4.84886 4.95744 4.98262 5.03375 5.13369 5.16959 5.18344 5.19833 5.48208 5.62490 5.71881 5.86902 6.08225 6.24488 6.30975 6.87225 6.99411 7.47145 8.97071 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.007860 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.553775 B = 3561.574161 C = 4516.592844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.272 3.728 3 H 0.021 0.979 4 C -0.523 4.523 5 H 0.070 0.930 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.260 1.260 10 H -0.288 1.288 11 H -0.283 1.283 12 N -0.996 5.996 13 C 0.092 3.908 14 S 2.798 3.202 15 O -1.024 7.024 16 O -1.006 7.006 17 N -1.097 6.097 18 C 0.118 3.882 19 H 0.099 0.901 20 C -0.176 4.176 21 C 0.085 3.915 22 H 0.097 0.903 23 O -0.573 6.573 24 C -0.147 4.147 25 H 0.069 0.931 26 H 0.018 0.982 27 H 0.047 0.953 28 H 0.262 0.738 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.419 0.581 33 H 0.125 0.875 34 H 0.070 0.930 35 H 0.396 0.604 36 H 0.059 0.941 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.973 -8.484 -7.976 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.038 0.962 4 C -0.562 4.562 5 H 0.088 0.912 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.184 1.184 10 H -0.214 1.214 11 H -0.209 1.209 12 N -0.838 5.838 13 C -0.054 4.054 14 S 2.807 3.193 15 O -1.008 7.008 16 O -0.989 6.989 17 N -0.858 5.858 18 C 0.010 3.990 19 H 0.117 0.883 20 C -0.215 4.215 21 C 0.026 3.974 22 H 0.115 0.885 23 O -0.381 6.381 24 C -0.186 4.186 25 H 0.088 0.912 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.255 0.745 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.246 0.754 36 H 0.078 0.922 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.004 -8.096 -8.256 15.963 hybrid contribution 0.632 0.337 1.071 1.288 sum 11.636 -7.759 -7.186 15.724 Atomic orbital electron populations 1.21950 0.97858 1.00187 0.99927 1.18390 0.91964 0.91271 0.81586 0.96166 1.21649 1.31172 1.12909 0.90488 0.91159 1.25729 0.95321 0.95683 1.01974 1.70034 1.37707 1.24128 1.24162 0.85477 0.78001 0.78680 0.79253 1.18395 1.21435 1.20912 1.57545 1.65329 1.22522 1.38387 1.21509 1.02418 0.80327 1.01113 1.01131 0.73084 0.71914 0.73154 1.93529 1.84694 1.35211 1.87373 1.93510 1.86622 1.76238 1.42524 1.55550 1.30370 1.15674 1.84195 1.21766 0.96047 0.82787 0.98409 0.88296 1.24164 0.95784 1.04055 0.97534 1.22780 0.97570 0.81764 0.95326 0.88486 1.86431 1.62790 1.21581 1.67325 1.23576 0.94789 1.03072 0.97145 0.91221 0.96274 0.93362 0.92854 0.92076 0.90718 0.90414 0.74548 0.85696 0.91139 0.75352 0.92182 0.85193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.80 8.95 71.98 0.64 -6.15 16 2 C 0.27 13.65 2.62 44.24 0.12 13.77 16 3 H 0.02 1.18 6.91 -2.39 -0.02 1.16 16 4 C -0.52 -26.85 8.37 25.60 0.21 -26.64 16 5 H 0.07 3.43 7.65 -2.91 -0.02 3.41 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -52.05 11.32 21.45 0.24 -51.81 16 8 Si 0.96 41.81 29.54 68.60 2.03 43.84 16 9 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 N -1.00 -41.34 3.12 -520.45 -1.62 -42.96 16 13 C 0.09 3.09 9.47 127.77 1.21 4.30 16 14 S 2.80 112.88 6.08 -56.49 -0.34 112.54 16 15 O -1.02 -49.79 16.70 -128.00 -2.14 -51.93 16 16 O -1.01 -40.71 16.51 -128.00 -2.11 -42.83 16 17 N -1.10 -36.65 5.74 -167.21 -0.96 -37.61 16 18 C 0.12 3.10 4.46 45.52 0.20 3.31 16 19 H 0.10 2.48 7.15 -2.39 -0.02 2.46 16 20 C -0.18 -3.39 7.71 31.12 0.24 -3.15 16 21 C 0.08 1.57 5.27 31.12 0.16 1.73 16 22 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 23 O -0.57 -12.28 12.18 -148.98 -1.81 -14.10 16 24 C -0.15 -3.36 7.70 31.12 0.24 -3.12 16 25 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 26 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 2.14 6.66 -2.38 -0.02 2.12 16 28 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.06 1.81 7.70 -2.39 -0.02 1.79 16 30 H 0.07 2.52 6.43 -2.38 -0.02 2.50 16 31 H 0.08 2.35 7.02 -2.39 -0.02 2.33 16 32 H 0.42 14.10 7.53 -96.74 -0.73 13.37 16 33 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.40 4.76 9.12 -74.06 -0.68 4.09 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -70.20 311.76 -3.55 -73.75 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.31 Total: 25.98 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 3.48 Total: -14.87 kcal Atomic # 7 Polarization: -130.05 SS G_CDS: -2.34 Total: -132.39 kcal Atomic # 8 Polarization: -102.79 SS G_CDS: -6.06 Total: -108.85 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 112.88 SS G_CDS: -0.34 Total: 112.54 kcal Total: -70.20 -3.55 -73.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601433977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.021 kcal (2) G-P(sol) polarization free energy of solvation -70.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds