Wall clock time and date at job start Tue Mar 31 2020 01:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47424 * 2 1 4 4 C 1.46499 * 119.99999 * 84.99501 * 3 2 1 5 5 C 1.50701 * 109.46992 * 85.00120 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 S 1.65593 * 119.99605 * 264.99786 * 3 2 1 14 14 O 1.42100 * 106.40784 * 23.53826 * 13 3 2 15 15 O 1.42105 * 106.40278 * 156.45824 * 13 3 2 16 16 N 1.65598 * 107.21993 * 269.99784 * 13 3 2 17 17 C 1.46502 * 120.00204 * 65.00171 * 16 13 3 18 18 H 1.09008 * 112.84423 * 346.19738 * 17 16 13 19 19 C 1.53773 * 113.61435 * 117.50222 * 17 16 13 20 20 C 1.53780 * 87.08180 * 89.11860 * 19 17 16 21 21 H 1.09001 * 113.69272 * 139.98819 * 20 19 17 22 22 O 1.42898 * 113.61689 * 270.88240 * 20 19 17 23 23 C 1.53779 * 113.61573 * 215.00606 * 17 16 13 24 24 H 1.09003 * 109.46676 * 60.00308 * 1 2 3 25 25 H 1.08994 * 109.47404 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47366 * 300.00765 * 1 2 3 27 27 H 1.08995 * 109.47366 * 239.99234 * 2 1 3 28 28 H 1.09003 * 109.46676 * 119.99692 * 2 1 3 29 29 H 1.09002 * 109.47391 * 325.00111 * 4 3 2 30 30 H 1.09001 * 109.46813 * 205.00167 * 4 3 2 31 31 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 32 32 H 0.97004 * 119.99875 * 245.00508 * 16 13 3 33 33 H 1.09000 * 113.61537 * 203.66657 * 19 17 16 34 34 H 1.09001 * 113.61813 * 334.56895 * 19 17 16 35 35 H 0.96702 * 113.99748 * 277.49872 * 22 20 19 36 36 H 1.08997 * 113.61665 * 25.42383 * 23 17 16 37 37 H 1.08998 * 113.61369 * 156.33493 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 3.4947 1.7888 1.8824 6 1 4.1724 1.1116 1.3837 7 6 3.8529 2.3614 3.0844 8 7 3.0279 3.1863 3.6915 9 14 5.5097 1.9654 3.8507 10 1 6.5230 2.9384 3.3693 11 1 5.4045 2.0512 5.3295 12 1 5.9190 0.5917 3.4626 13 16 2.4123 2.1200 -1.4287 14 8 1.6870 1.4413 -2.4448 15 8 2.3058 3.5185 -1.1999 16 7 4.0145 1.8135 -1.7137 17 6 4.4658 0.4411 -1.9568 18 1 3.7159 -0.3043 -1.6915 19 6 5.0784 0.2320 -3.3516 20 6 6.4298 0.6230 -2.7304 21 1 7.2667 0.0246 -3.0903 22 8 6.6936 2.0268 -2.7706 23 6 5.8615 0.1412 -1.3850 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.3617 1.8098 1.9453 30 1 2.0922 3.1803 1.0755 31 1 3.2797 3.5889 4.5373 32 1 4.6542 2.5426 -1.7196 33 1 5.0387 -0.8015 -3.6955 34 1 4.7190 0.9413 -4.0972 35 1 7.0511 2.3358 -3.6143 36 1 6.1344 0.7772 -0.5430 37 1 6.0359 -0.9172 -1.1913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601434193.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:48 Heat of formation + Delta-G solvation = -107.063987 kcal Electronic energy + Delta-G solvation = -21413.119308 eV Core-core repulsion = 18125.043269 eV Total energy + Delta-G solvation = -3288.076039 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.49732 -36.57317 -35.98160 -35.14082 -35.07906 -32.67116 -31.79860 -29.90139 -26.57588 -25.67088 -24.10628 -23.08675 -21.65709 -19.73413 -18.91404 -17.51854 -16.86304 -16.73255 -16.22246 -15.87786 -15.21720 -14.94518 -14.41348 -14.06572 -13.70002 -13.36834 -12.94629 -12.85889 -12.63452 -12.05625 -11.93386 -11.78195 -11.64805 -11.46279 -11.39502 -11.26912 -11.20264 -11.01186 -10.92694 -10.47210 -10.35839 -10.30926 -10.04705 -9.74051 -9.61309 -9.01904 -8.45000 -8.01662 -6.06676 -4.12480 1.37944 3.28277 3.34904 3.35659 3.54993 4.05477 4.25685 4.40279 4.55519 4.73891 4.93773 5.02289 5.06425 5.27997 5.34867 5.57043 5.64168 5.74264 5.80369 5.85022 5.87500 6.08173 6.12832 6.21525 6.31825 6.55635 6.68696 6.72200 7.34025 7.46341 7.58631 7.64792 7.75012 7.91048 8.20483 8.92290 9.53099 11.01519 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013752 B = 0.009008 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.608244 B = 3107.583557 C = 4285.871468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.992 5.992 4 C 0.246 3.754 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 S 2.787 3.213 14 O -1.001 7.001 15 O -0.981 6.981 16 N -1.100 6.100 17 C 0.147 3.853 18 H 0.094 0.906 19 C -0.188 4.188 20 C 0.079 3.921 21 H 0.064 0.936 22 O -0.547 6.547 23 C -0.146 4.146 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.263 0.737 32 H 0.420 0.580 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.377 0.623 36 H 0.091 0.909 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.363 -8.267 -11.663 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.833 5.833 4 C 0.124 3.876 5 C -0.575 4.575 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.199 1.199 13 S 2.795 3.205 14 O -0.985 6.985 15 O -0.965 6.965 16 N -0.858 5.858 17 C 0.038 3.962 18 H 0.112 0.888 19 C -0.227 4.227 20 C 0.020 3.980 21 H 0.082 0.918 22 O -0.352 6.352 23 C -0.185 4.185 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.255 0.745 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.224 0.776 36 H 0.109 0.891 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.378 -7.803 -11.421 14.238 hybrid contribution 1.720 -0.100 0.292 1.747 sum 5.097 -7.902 -11.129 14.570 Atomic orbital electron populations 1.22205 0.96928 1.01345 1.02444 1.21020 0.93768 0.83097 1.01904 1.57712 1.78611 1.22777 1.24230 1.19181 0.97271 0.92240 0.78918 1.21562 1.02157 1.27886 1.05888 0.91865 1.24960 0.97177 0.94913 0.96978 1.69937 1.35924 1.29972 1.17127 0.86565 0.84178 0.78719 0.78314 1.20576 1.21274 1.19892 1.01686 0.72852 0.73044 0.72966 1.93538 1.70992 1.76498 1.57425 1.93587 1.85800 1.31143 1.85967 1.55776 1.29110 1.13472 1.87485 1.21276 0.96318 0.83716 0.94888 0.88836 1.24167 0.97738 1.02427 0.98411 1.22739 0.95012 0.82315 0.97970 0.91763 1.86490 1.86607 1.22342 1.39736 1.23486 0.95530 1.01986 0.97456 0.92632 0.92393 0.92040 0.92109 0.90191 0.94423 0.93229 0.92680 0.74484 0.88728 0.90349 0.77553 0.89086 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.24 37.16 0.38 -2.32 16 2 C 0.13 2.22 5.99 -4.04 -0.02 2.20 16 3 N -0.99 -20.59 2.82 -115.66 -0.33 -20.92 16 4 C 0.25 6.18 5.43 -5.19 -0.03 6.15 16 5 C -0.54 -14.13 9.38 -34.44 -0.32 -14.45 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 S 2.79 56.86 6.04 -107.50 -0.65 56.21 16 14 O -1.00 -20.65 16.87 -57.17 -0.96 -21.61 16 15 O -0.98 -23.70 16.69 -57.17 -0.95 -24.66 16 16 N -1.10 -19.10 5.74 -4.20 -0.02 -19.13 16 17 C 0.15 2.11 4.46 -67.12 -0.30 1.81 16 18 H 0.09 1.28 6.50 -51.92 -0.34 0.94 16 19 C -0.19 -2.13 7.71 -25.92 -0.20 -2.33 16 20 C 0.08 0.88 5.28 -25.92 -0.14 0.74 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 22 O -0.55 -6.59 12.17 -35.23 -0.43 -7.02 16 23 C -0.15 -1.88 7.70 -25.92 -0.20 -2.08 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.92 6.15 -51.93 -0.32 0.60 16 28 H 0.08 1.37 8.11 -51.93 -0.42 0.94 16 29 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 30 H 0.05 1.39 6.91 -51.93 -0.36 1.03 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.42 7.32 7.53 -34.47 -0.26 7.06 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.38 2.79 9.12 45.56 0.42 3.20 16 36 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 319.81 15.07 4.82 4.82 Total: -1.00 -33.49 319.81 -8.37 -41.86 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -4.63 Total: 8.22 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -0.93 Total: -8.67 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: 0.39 Total: -65.14 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -2.35 Total: -53.29 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 56.86 SS G_CDS: -0.65 Total: 56.21 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.49 -8.37 -41.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601434193.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.202 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds