Wall clock time and date at job start Tue Mar 31 2020 01:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47424 * 2 1 4 4 C 1.46499 * 119.99999 * 84.99501 * 3 2 1 5 5 C 1.50701 * 109.46992 * 85.00120 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 S 1.65593 * 119.99605 * 264.99786 * 3 2 1 14 14 O 1.42100 * 106.40784 * 23.53826 * 13 3 2 15 15 O 1.42105 * 106.40278 * 156.45824 * 13 3 2 16 16 N 1.65598 * 107.21993 * 269.99784 * 13 3 2 17 17 C 1.46502 * 120.00204 * 65.00171 * 16 13 3 18 18 H 1.09008 * 112.84423 * 346.19738 * 17 16 13 19 19 C 1.53773 * 113.61435 * 117.50222 * 17 16 13 20 20 C 1.53780 * 87.08180 * 89.11860 * 19 17 16 21 21 H 1.09001 * 113.69272 * 139.98819 * 20 19 17 22 22 O 1.42898 * 113.61689 * 270.88240 * 20 19 17 23 23 C 1.53779 * 113.61573 * 215.00606 * 17 16 13 24 24 H 1.09003 * 109.46676 * 60.00308 * 1 2 3 25 25 H 1.08994 * 109.47404 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47366 * 300.00765 * 1 2 3 27 27 H 1.08995 * 109.47366 * 239.99234 * 2 1 3 28 28 H 1.09003 * 109.46676 * 119.99692 * 2 1 3 29 29 H 1.09002 * 109.47391 * 325.00111 * 4 3 2 30 30 H 1.09001 * 109.46813 * 205.00167 * 4 3 2 31 31 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 32 32 H 0.97004 * 119.99875 * 245.00508 * 16 13 3 33 33 H 1.09000 * 113.61537 * 203.66657 * 19 17 16 34 34 H 1.09001 * 113.61813 * 334.56895 * 19 17 16 35 35 H 0.96702 * 113.99748 * 277.49872 * 22 20 19 36 36 H 1.08997 * 113.61665 * 25.42383 * 23 17 16 37 37 H 1.08998 * 113.61369 * 156.33493 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 3.4947 1.7888 1.8824 6 1 4.1724 1.1116 1.3837 7 6 3.8529 2.3614 3.0844 8 7 3.0279 3.1863 3.6915 9 14 5.5097 1.9654 3.8507 10 1 6.5230 2.9384 3.3693 11 1 5.4045 2.0512 5.3295 12 1 5.9190 0.5917 3.4626 13 16 2.4123 2.1200 -1.4287 14 8 1.6870 1.4413 -2.4448 15 8 2.3058 3.5185 -1.1999 16 7 4.0145 1.8135 -1.7137 17 6 4.4658 0.4411 -1.9568 18 1 3.7159 -0.3043 -1.6915 19 6 5.0784 0.2320 -3.3516 20 6 6.4298 0.6230 -2.7304 21 1 7.2667 0.0246 -3.0903 22 8 6.6936 2.0268 -2.7706 23 6 5.8615 0.1412 -1.3850 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.3617 1.8098 1.9453 30 1 2.0922 3.1803 1.0755 31 1 3.2797 3.5889 4.5373 32 1 4.6542 2.5426 -1.7196 33 1 5.0387 -0.8015 -3.6955 34 1 4.7190 0.9413 -4.0972 35 1 7.0511 2.3358 -3.6143 36 1 6.1344 0.7772 -0.5430 37 1 6.0359 -0.9172 -1.1913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601434193.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:47 Heat of formation + Delta-G solvation = -134.972498 kcal Electronic energy + Delta-G solvation = -21414.329512 eV Core-core repulsion = 18125.043269 eV Total energy + Delta-G solvation = -3289.286243 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45754 -38.28205 -37.66280 -36.87404 -36.06154 -34.68116 -33.04305 -31.51678 -28.48475 -26.58501 -25.18358 -24.85676 -23.25987 -20.82749 -20.34100 -18.84087 -18.57213 -18.29771 -17.82740 -17.34109 -16.69861 -16.15627 -15.99231 -15.39681 -15.03265 -14.77971 -14.66802 -13.99808 -13.77705 -13.71904 -13.60359 -13.35095 -13.17421 -13.04550 -12.97278 -12.77976 -12.67779 -12.48719 -12.31701 -12.19582 -12.10062 -11.72294 -11.59008 -11.28590 -10.57926 -10.51817 -10.27945 -9.75846 -8.15661 -6.28819 -0.24413 1.42436 1.44305 1.53583 2.01671 2.43525 2.63317 3.16158 3.28780 3.45455 3.63692 3.83025 3.92636 3.96632 4.19473 4.37666 4.45535 4.49847 4.73222 4.82119 4.85352 4.98384 5.00585 5.12597 5.16818 5.20010 5.27579 5.41385 5.45958 5.56974 5.77952 5.93611 6.12352 6.25873 6.83834 7.00308 7.41021 8.92676 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013752 B = 0.009008 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.608244 B = 3107.583557 C = 4285.871468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 N -0.995 5.995 4 C 0.262 3.738 5 C -0.537 4.537 6 H 0.074 0.926 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.961 3.039 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.256 1.256 13 S 2.800 3.200 14 O -1.002 7.002 15 O -1.025 7.025 16 N -1.096 6.096 17 C 0.118 3.882 18 H 0.100 0.900 19 C -0.175 4.175 20 C 0.084 3.916 21 H 0.098 0.902 22 O -0.573 6.573 23 C -0.148 4.148 24 H 0.046 0.954 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.022 0.978 30 H 0.012 0.988 31 H 0.264 0.736 32 H 0.419 0.581 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.396 0.604 36 H 0.058 0.942 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 -10.765 -12.769 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.006 4.006 3 N -0.836 5.836 4 C 0.138 3.862 5 C -0.576 4.576 6 H 0.092 0.908 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.180 1.180 13 S 2.808 3.192 14 O -0.986 6.986 15 O -1.010 7.010 16 N -0.856 5.856 17 C 0.010 3.990 18 H 0.118 0.882 19 C -0.215 4.215 20 C 0.025 3.975 21 H 0.115 0.885 22 O -0.382 6.382 23 C -0.187 4.187 24 H 0.065 0.935 25 H 0.112 0.888 26 H 0.065 0.935 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.040 0.960 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.254 0.746 33 H 0.144 0.856 34 H 0.089 0.911 35 H 0.246 0.754 36 H 0.077 0.923 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.059 -10.333 -12.564 17.036 hybrid contribution 1.172 0.645 0.565 1.452 sum 6.232 -9.688 -11.999 16.633 Atomic orbital electron populations 1.22200 0.95958 1.03327 1.01267 1.21336 0.94718 0.81257 1.03333 1.57603 1.79371 1.24065 1.22583 1.18692 0.96591 0.90623 0.80289 1.21867 1.02521 1.27444 1.05776 0.90794 1.25850 1.00845 0.94817 0.97725 1.70076 1.38041 1.31348 1.17655 0.85511 0.79465 0.79199 0.77222 1.20676 1.21132 1.17989 1.01113 0.73504 0.71861 0.72722 1.93524 1.71685 1.76209 1.57151 1.93522 1.86820 1.34153 1.86504 1.55520 1.27667 1.15174 1.87285 1.21777 0.97447 0.81853 0.97886 0.88246 1.24164 0.97048 1.04083 0.96173 1.22792 0.96034 0.82217 0.96459 0.88471 1.86442 1.86903 1.23284 1.41541 1.23596 0.94597 1.03259 0.97265 0.93510 0.88835 0.93509 0.89410 0.89928 0.95983 0.96967 0.92688 0.74561 0.85592 0.91145 0.75391 0.92305 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 10.24 71.98 0.74 -4.42 16 2 C 0.12 3.95 5.99 86.38 0.52 4.47 16 3 N -1.00 -41.61 2.82 -519.84 -1.47 -43.08 16 4 C 0.26 13.57 5.43 85.63 0.47 14.04 16 5 C -0.54 -28.54 9.38 25.60 0.24 -28.29 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -55.21 13.29 21.45 0.28 -54.93 16 9 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 13 S 2.80 115.12 6.04 -56.49 -0.34 114.78 16 14 O -1.00 -40.58 16.87 -128.00 -2.16 -42.74 16 15 O -1.03 -51.43 16.69 -128.00 -2.14 -53.57 16 16 N -1.10 -37.50 5.74 -167.20 -0.96 -38.46 16 17 C 0.12 3.13 4.46 45.51 0.20 3.33 16 18 H 0.10 2.45 6.50 -2.38 -0.02 2.43 16 19 C -0.18 -3.38 7.71 31.12 0.24 -3.14 16 20 C 0.08 1.59 5.28 31.12 0.16 1.75 16 21 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 22 O -0.57 -12.74 12.17 -148.98 -1.81 -14.55 16 23 C -0.15 -3.44 7.70 31.12 0.24 -3.21 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 2.44 6.15 -2.39 -0.01 2.42 16 28 H 0.08 2.71 8.11 -2.39 -0.02 2.69 16 29 H 0.02 1.20 8.11 -2.39 -0.02 1.18 16 30 H 0.01 0.73 6.91 -2.39 -0.02 0.71 16 31 H 0.26 14.83 8.31 -92.71 -0.77 14.05 16 32 H 0.42 14.66 7.53 -96.74 -0.73 13.93 16 33 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.40 5.03 9.12 -74.06 -0.68 4.36 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -73.38 319.81 -3.62 -76.99 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.32 Total: 25.23 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 3.27 Total: -14.66 kcal Atomic # 7 Polarization: -134.32 SS G_CDS: -2.14 Total: -136.46 kcal Atomic # 8 Polarization: -104.74 SS G_CDS: -6.11 Total: -110.85 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 115.12 SS G_CDS: -0.34 Total: 114.78 kcal Total: -73.38 -3.62 -76.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601434193.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.981 kcal (2) G-P(sol) polarization free energy of solvation -73.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds