Wall clock time and date at job start Tue Mar 31 2020 00:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46698 * 2 1 4 4 C 1.50696 * 109.46999 * 119.99757 * 2 1 3 5 5 O 1.21284 * 120.00109 * 120.00318 * 4 2 1 6 6 N 1.34777 * 120.00137 * 300.00533 * 4 2 1 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.46928 * 179.97438 * 7 6 4 9 9 H 1.08003 * 119.99963 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99865 * 179.97438 * 8 7 6 11 11 N 1.31522 * 119.99749 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 120.00236 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47160 * 89.99730 * 12 10 8 14 14 H 1.48503 * 109.47061 * 209.99752 * 12 10 8 15 15 H 1.48500 * 109.46598 * 329.99398 * 12 10 8 16 16 C 1.50699 * 109.47389 * 239.99930 * 2 1 3 17 17 C 1.38257 * 120.00009 * 300.00336 * 16 2 1 18 18 C 1.38209 * 120.00029 * 179.97438 * 17 16 2 19 19 C 1.38260 * 120.00153 * 359.97438 * 18 17 16 20 20 C 1.38215 * 119.99692 * 359.97438 * 19 18 17 21 21 N 1.48022 * 119.99855 * 180.02562 * 20 19 18 22 22 O 1.21795 * 119.99827 * 0.02562 * 21 20 19 23 23 O 1.21802 * 120.00084 * 179.97438 * 21 20 19 24 24 C 1.38211 * 119.99932 * 119.72333 * 16 2 1 25 25 H 1.08992 * 109.47513 * 299.99609 * 1 2 3 26 26 H 1.09002 * 109.46838 * 60.00504 * 1 2 3 27 27 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 29 29 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 30 30 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 31 31 H 0.97001 * 119.99269 * 180.02562 * 11 10 8 32 32 H 1.08000 * 120.00199 * 359.97438 * 17 16 2 33 33 H 1.08002 * 120.00098 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.00178 * 180.02562 * 19 18 17 35 35 H 1.08002 * 119.99909 * 0.02562 * 24 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.6934 -0.2296 4.8812 9 1 1.0720 0.6482 4.7821 10 6 2.0265 -0.7006 6.1334 11 7 1.5888 -0.0800 7.2073 12 14 3.1007 -2.2192 6.3049 13 1 4.5283 -1.8132 6.3504 14 1 2.7495 -2.9350 7.5578 15 1 2.8779 -3.1167 5.1430 16 6 2.0324 -0.7104 -1.2304 17 6 1.6984 -2.0341 -1.4492 18 6 2.1587 -2.6854 -2.5780 19 6 2.9528 -2.0132 -3.4885 20 6 3.2858 -0.6897 -3.2703 21 7 4.1355 0.0302 -4.2454 22 8 4.5407 -0.5438 -5.2403 23 8 4.4286 1.1967 -4.0534 24 6 2.8223 -0.0370 -2.1430 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.1492 0.5389 2.5435 29 1 1.8325 -1.9681 3.6509 30 1 3.2854 -0.9398 3.6506 31 1 1.8235 -0.4112 8.0882 32 1 1.0778 -2.5591 -0.7382 33 1 1.8975 -3.7193 -2.7491 34 1 3.3122 -2.5221 -4.3708 35 1 3.0798 0.9981 -1.9742 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700875505.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:13 Heat of formation + Delta-G solvation = -24.962776 kcal Electronic energy + Delta-G solvation = -20727.780868 eV Core-core repulsion = 17307.821053 eV Total energy + Delta-G solvation = -3419.959814 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.29148 -40.37304 -38.74410 -36.67714 -34.59483 -34.42540 -32.47161 -32.03815 -30.23077 -27.94841 -26.68440 -24.95274 -23.01521 -22.71917 -21.51498 -20.08529 -18.91637 -18.71953 -17.63975 -17.33250 -16.83825 -16.27730 -15.84942 -15.46140 -14.84791 -14.57611 -14.31442 -13.86428 -13.48388 -13.24358 -12.75780 -12.57339 -12.44451 -12.38532 -12.19452 -11.75834 -11.68551 -11.37852 -11.25732 -11.24032 -11.09803 -10.85813 -10.06895 -9.74444 -9.62196 -9.53908 -9.24834 -8.88065 -8.33173 -6.30572 -4.33809 -0.27186 0.71573 1.24540 1.28146 2.96080 3.06123 3.19300 3.26521 3.32901 3.75456 4.05530 4.22679 4.24517 4.50790 4.68888 4.69153 4.75916 4.95331 5.02897 5.05068 5.17423 5.37696 5.45190 5.54914 5.57636 5.76305 5.91657 5.98496 6.08218 6.34481 6.66439 6.93538 7.03107 7.26023 7.52685 7.98219 8.35597 8.61151 8.73480 9.28730 10.81246 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029293 B = 0.003520 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.616162 B = 7953.410539 C = 8014.650237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.077 4.077 3 H 0.110 0.890 4 C 0.504 3.496 5 O -0.552 6.552 6 N -0.699 5.699 7 C 0.220 3.780 8 C -0.547 4.547 9 H 0.080 0.920 10 C 0.079 3.921 11 N -0.890 5.890 12 Si 0.877 3.123 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.262 1.262 16 C -0.055 4.055 17 C -0.030 4.030 18 C -0.119 4.119 19 C -0.058 4.058 20 C -0.049 4.049 21 N 0.032 4.968 22 O -0.167 6.167 23 O -0.163 6.163 24 C -0.050 4.050 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.398 0.602 29 H 0.026 0.974 30 H 0.021 0.979 31 H 0.269 0.731 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 -1.962 -19.209 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 H 0.128 0.872 4 C 0.288 3.712 5 O -0.431 6.431 6 N -0.347 5.347 7 C 0.098 3.902 8 C -0.584 4.584 9 H 0.098 0.902 10 C -0.125 4.125 11 N -0.527 5.527 12 Si 0.703 3.297 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.186 1.186 16 C -0.057 4.057 17 C -0.048 4.048 18 C -0.137 4.137 19 C -0.077 4.077 20 C -0.132 4.132 21 N 0.550 4.450 22 O -0.382 6.382 23 O -0.379 6.379 24 C -0.069 4.069 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.232 0.768 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.655 -3.013 -18.564 18.993 hybrid contribution 0.620 -0.130 0.149 0.650 sum -2.035 -3.143 -18.415 18.792 Atomic orbital electron populations 1.21825 0.91376 1.03348 1.03424 1.20389 0.98211 1.00654 0.90603 0.87219 1.20192 0.81205 0.85069 0.84707 1.90683 1.38796 1.26854 1.86809 1.46172 1.51503 1.31300 1.05704 1.19531 0.94916 0.93374 0.82333 1.21063 1.34123 1.14437 0.88821 0.90186 1.24794 0.95366 0.96916 0.95467 1.69878 1.44629 1.40090 0.98110 0.86823 0.81205 0.83415 0.78263 1.19807 1.20805 1.18600 1.19379 0.97111 0.94355 0.94806 1.21498 0.94875 0.93343 0.95095 1.21189 0.97909 1.00893 0.93733 1.21037 0.95222 0.91222 1.00261 1.21001 1.03795 0.94391 0.93972 1.43635 0.99402 1.00927 1.01004 1.94517 1.56113 1.69398 1.18150 1.94540 1.61204 1.00399 1.81769 1.20892 0.93906 1.01421 0.90644 0.90633 0.91321 0.91672 0.76803 0.95596 0.96088 0.92155 0.84019 0.83527 0.83162 0.83020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.90 37.16 0.33 -0.94 16 2 C -0.08 -0.87 2.90 -92.92 -0.27 -1.14 16 3 H 0.11 1.04 7.88 -51.93 -0.41 0.63 16 4 C 0.50 8.36 7.02 -10.99 -0.08 8.28 16 5 O -0.55 -11.15 15.11 5.55 0.08 -11.06 16 6 N -0.70 -12.72 5.44 -61.47 -0.33 -13.05 16 7 C 0.22 5.09 4.50 -5.19 -0.02 5.07 16 8 C -0.55 -14.32 9.83 -34.44 -0.34 -14.66 16 9 H 0.08 2.18 7.84 -52.48 -0.41 1.76 16 10 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 11 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 12 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 16 C -0.06 -0.63 4.40 -104.63 -0.46 -1.09 16 17 C -0.03 -0.32 7.93 -39.59 -0.31 -0.63 16 18 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 19 C -0.06 -0.58 9.56 -39.58 -0.38 -0.96 16 20 C -0.05 -0.58 6.85 -79.95 -0.55 -1.13 16 21 N 0.03 0.44 4.45 33.96 0.15 0.59 16 22 O -0.17 -2.33 18.45 -29.46 -0.54 -2.87 16 23 O -0.16 -2.36 18.45 -29.46 -0.54 -2.90 16 24 C -0.05 -0.56 9.18 -39.58 -0.36 -0.93 16 25 H 0.07 0.66 7.56 -51.93 -0.39 0.26 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.59 7.39 -51.93 -0.38 0.20 16 28 H 0.40 6.27 7.74 -40.82 -0.32 5.95 16 29 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 30 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.14 1.46 7.52 -52.49 -0.39 1.06 16 33 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.15 1.22 7.61 -52.49 -0.40 0.82 16 35 H 0.15 1.54 7.50 -52.49 -0.39 1.15 16 LS Contribution 310.99 15.07 4.69 4.69 Total: -1.00 -32.01 310.99 -7.21 -39.22 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -3.88 Total: 1.76 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -2.94 Total: -7.53 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.59 Total: -37.38 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -1.00 Total: -16.84 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.01 -7.21 -39.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700875505.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.260 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds