Wall clock time and date at job start Tue Mar 31 2020 00:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46698 * 2 1 4 4 C 1.50696 * 109.46999 * 119.99757 * 2 1 3 5 5 O 1.21284 * 120.00109 * 120.00318 * 4 2 1 6 6 N 1.34777 * 120.00137 * 300.00533 * 4 2 1 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.46928 * 179.97438 * 7 6 4 9 9 H 1.08003 * 119.99963 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99865 * 179.97438 * 8 7 6 11 11 N 1.31522 * 119.99749 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 120.00236 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47160 * 89.99730 * 12 10 8 14 14 H 1.48503 * 109.47061 * 209.99752 * 12 10 8 15 15 H 1.48500 * 109.46598 * 329.99398 * 12 10 8 16 16 C 1.50699 * 109.47389 * 239.99930 * 2 1 3 17 17 C 1.38257 * 120.00009 * 300.00336 * 16 2 1 18 18 C 1.38209 * 120.00029 * 179.97438 * 17 16 2 19 19 C 1.38260 * 120.00153 * 359.97438 * 18 17 16 20 20 C 1.38215 * 119.99692 * 359.97438 * 19 18 17 21 21 N 1.48022 * 119.99855 * 180.02562 * 20 19 18 22 22 O 1.21795 * 119.99827 * 0.02562 * 21 20 19 23 23 O 1.21802 * 120.00084 * 179.97438 * 21 20 19 24 24 C 1.38211 * 119.99932 * 119.72333 * 16 2 1 25 25 H 1.08992 * 109.47513 * 299.99609 * 1 2 3 26 26 H 1.09002 * 109.46838 * 60.00504 * 1 2 3 27 27 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 29 29 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 30 30 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 31 31 H 0.97001 * 119.99269 * 180.02562 * 11 10 8 32 32 H 1.08000 * 120.00199 * 359.97438 * 17 16 2 33 33 H 1.08002 * 120.00098 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.00178 * 180.02562 * 19 18 17 35 35 H 1.08002 * 119.99909 * 0.02562 * 24 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.6934 -0.2296 4.8812 9 1 1.0720 0.6482 4.7821 10 6 2.0265 -0.7006 6.1334 11 7 1.5888 -0.0800 7.2073 12 14 3.1007 -2.2192 6.3049 13 1 4.5283 -1.8132 6.3504 14 1 2.7495 -2.9350 7.5578 15 1 2.8779 -3.1167 5.1430 16 6 2.0324 -0.7104 -1.2304 17 6 1.6984 -2.0341 -1.4492 18 6 2.1587 -2.6854 -2.5780 19 6 2.9528 -2.0132 -3.4885 20 6 3.2858 -0.6897 -3.2703 21 7 4.1355 0.0302 -4.2454 22 8 4.5407 -0.5438 -5.2403 23 8 4.4286 1.1967 -4.0534 24 6 2.8223 -0.0370 -2.1430 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.1492 0.5389 2.5435 29 1 1.8325 -1.9681 3.6509 30 1 3.2854 -0.9398 3.6506 31 1 1.8235 -0.4112 8.0882 32 1 1.0778 -2.5591 -0.7382 33 1 1.8975 -3.7193 -2.7491 34 1 3.3122 -2.5221 -4.3708 35 1 3.0798 0.9981 -1.9742 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700875505.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:12 Heat of formation + Delta-G solvation = -45.088156 kcal Electronic energy + Delta-G solvation = -20728.653570 eV Core-core repulsion = 17307.821053 eV Total energy + Delta-G solvation = -3420.832516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.28682 -41.43076 -39.89954 -37.71390 -36.21717 -35.47003 -34.38329 -32.87599 -31.21716 -29.65517 -27.63113 -25.92807 -24.38858 -23.71419 -22.81348 -21.38764 -20.04532 -19.74956 -18.91602 -18.64388 -17.81896 -17.58257 -17.16666 -16.64026 -16.15951 -15.97715 -15.49364 -14.91065 -14.70621 -14.44403 -14.38506 -13.99219 -13.43806 -13.24574 -13.20014 -13.07308 -12.77337 -12.74047 -12.62274 -12.33409 -12.23903 -12.13186 -11.94267 -11.66077 -10.93250 -10.82513 -10.54252 -10.19797 -9.95489 -8.40879 -6.47868 -1.23145 -0.07685 0.30980 0.34808 1.31635 1.34622 1.45322 1.65557 2.16188 2.26577 2.54612 2.94918 3.17162 3.45751 3.64032 3.87302 3.90109 3.95600 4.00238 4.16169 4.34587 4.59151 4.68854 4.77693 4.82487 4.85779 4.99123 5.02019 5.10340 5.19937 5.24966 5.28084 5.47396 5.50211 6.06578 6.46510 6.53818 6.79737 7.14095 7.35193 8.73779 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029293 B = 0.003520 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.616162 B = 7953.410539 C = 8014.650237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 H 0.131 0.869 4 C 0.505 3.495 5 O -0.588 6.588 6 N -0.701 5.701 7 C 0.232 3.768 8 C -0.546 4.546 9 H 0.061 0.939 10 C 0.026 3.974 11 N -0.931 5.931 12 Si 0.936 3.064 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.258 1.258 16 C -0.067 4.067 17 C -0.037 4.037 18 C -0.109 4.109 19 C -0.054 4.054 20 C -0.065 4.065 21 N 0.033 4.967 22 O -0.172 6.172 23 O -0.190 6.190 24 C -0.053 4.053 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.410 0.590 29 H 0.016 0.984 30 H 0.009 0.991 31 H 0.272 0.728 32 H 0.145 0.855 33 H 0.180 0.820 34 H 0.169 0.831 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.093 -3.051 -20.569 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 H 0.149 0.851 4 C 0.292 3.708 5 O -0.469 6.469 6 N -0.350 5.350 7 C 0.108 3.892 8 C -0.584 4.584 9 H 0.079 0.921 10 C -0.174 4.174 11 N -0.570 5.570 12 Si 0.760 3.240 13 H -0.194 1.194 14 H -0.200 1.200 15 H -0.182 1.182 16 C -0.068 4.068 17 C -0.055 4.055 18 C -0.127 4.127 19 C -0.073 4.073 20 C -0.149 4.149 21 N 0.548 4.452 22 O -0.387 6.387 23 O -0.401 6.401 24 C -0.072 4.072 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.083 0.917 28 H 0.246 0.754 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.081 0.919 32 H 0.162 0.838 33 H 0.198 0.802 34 H 0.186 0.814 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.007 -4.045 -19.945 20.572 hybrid contribution 0.674 0.185 0.529 0.876 sum -2.333 -3.860 -19.417 19.934 Atomic orbital electron populations 1.21862 0.89293 1.03789 1.04765 1.20350 0.99751 1.00831 0.87597 0.85088 1.21044 0.79940 0.84503 0.85320 1.90660 1.40249 1.28587 1.87386 1.45999 1.52096 1.31716 1.05170 1.19098 0.94008 0.92905 0.83160 1.21304 1.33185 1.13786 0.90124 0.92108 1.25593 0.96719 0.99751 0.95340 1.69985 1.46362 1.41925 0.98739 0.85882 0.79541 0.80119 0.78479 1.19365 1.19974 1.18169 1.19409 0.97737 0.94874 0.94821 1.21726 0.94818 0.93240 0.95712 1.21540 0.96552 1.02159 0.92463 1.21360 0.94591 0.90408 1.00937 1.21204 1.04437 0.95202 0.94008 1.43902 0.99347 1.00849 1.01152 1.94492 1.56305 1.69265 1.18672 1.94532 1.62274 1.01108 1.82172 1.20976 0.93751 1.01909 0.90575 0.90411 0.88871 0.91738 0.75409 0.96568 0.97303 0.91890 0.83756 0.80233 0.81350 0.82375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.90 71.98 0.64 -1.48 16 2 C -0.06 -1.31 2.90 -12.29 -0.04 -1.35 16 3 H 0.13 2.14 7.88 -2.39 -0.02 2.12 16 4 C 0.51 16.04 7.02 87.66 0.62 16.66 16 5 O -0.59 -23.09 15.11 -3.04 -0.05 -23.13 16 6 N -0.70 -24.88 5.44 -466.77 -2.54 -27.42 16 7 C 0.23 10.63 4.50 85.63 0.38 11.02 16 8 C -0.55 -28.77 9.83 25.60 0.25 -28.51 16 9 H 0.06 3.36 7.84 -2.91 -0.02 3.33 16 10 C 0.03 1.44 5.47 84.65 0.46 1.91 16 11 N -0.93 -54.28 13.96 21.45 0.30 -53.98 16 12 Si 0.94 42.63 27.47 68.60 1.88 44.52 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 H -0.26 -11.47 6.54 99.48 0.65 -10.81 16 16 C -0.07 -1.38 4.40 -19.87 -0.09 -1.47 16 17 C -0.04 -0.69 7.93 22.27 0.18 -0.52 16 18 C -0.11 -1.62 10.05 22.27 0.22 -1.39 16 19 C -0.05 -0.93 9.56 22.27 0.21 -0.72 16 20 C -0.07 -1.46 6.85 36.37 0.25 -1.21 16 21 N 0.03 0.87 4.45 -46.46 -0.21 0.66 16 22 O -0.17 -4.62 18.45 18.89 0.35 -4.27 16 23 O -0.19 -5.45 18.45 18.88 0.35 -5.10 16 24 C -0.05 -1.12 9.18 22.27 0.20 -0.91 16 25 H 0.08 1.16 7.56 -2.39 -0.02 1.15 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.00 7.39 -2.38 -0.02 0.98 16 28 H 0.41 12.52 7.74 -92.71 -0.72 11.80 16 29 H 0.02 0.78 7.20 -2.38 -0.02 0.77 16 30 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 31 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.14 2.64 7.52 -2.91 -0.02 2.62 16 33 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.17 2.25 7.61 -2.91 -0.02 2.22 16 35 H 0.16 3.00 7.50 -2.91 -0.02 2.98 16 Total: -1.00 -69.06 310.99 3.74 -65.32 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.36 Total: 11.38 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 3.30 Total: -7.98 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -2.45 Total: -80.73 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: 0.65 Total: -32.50 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.52 kcal Total: -69.06 3.74 -65.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700875505.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.229 kcal (2) G-P(sol) polarization free energy of solvation -69.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds