Wall clock time and date at job start Tue Mar 31 2020 00:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 O 1.21281 * 119.99736 * 240.00187 * 4 2 1 6 6 N 1.34779 * 120.00201 * 59.99469 * 4 2 1 7 7 C 1.46503 * 119.99606 * 180.02562 * 6 4 2 8 8 C 1.50705 * 109.46552 * 179.97438 * 7 6 4 9 9 H 1.08001 * 120.00318 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99785 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99777 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 120.00037 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47227 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47513 * 120.00630 * 12 10 8 15 15 H 1.48500 * 109.47425 * 240.00710 * 12 10 8 16 16 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 17 17 C 1.38261 * 119.99617 * 59.73360 * 16 2 1 18 18 C 1.38217 * 119.99597 * 179.76621 * 17 16 2 19 19 C 1.38253 * 120.00209 * 0.50098 * 18 17 16 20 20 C 1.38213 * 119.99849 * 359.75054 * 19 18 17 21 21 N 1.48016 * 120.00257 * 179.97438 * 20 19 18 22 22 O 1.21798 * 120.00564 * 180.02562 * 21 20 19 23 23 O 1.21806 * 119.99774 * 0.02562 * 21 20 19 24 24 C 1.38207 * 120.00269 * 240.00231 * 16 2 1 25 25 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 26 26 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 0.96991 * 119.99747 * 0.02562 * 6 4 2 29 29 H 1.08992 * 109.47080 * 299.99586 * 7 6 4 30 30 H 1.09001 * 109.47138 * 60.00172 * 7 6 4 31 31 H 0.97000 * 119.99425 * 179.97438 * 11 10 8 32 32 H 1.07993 * 120.00099 * 359.97438 * 17 16 2 33 33 H 1.07997 * 119.99915 * 180.22611 * 18 17 16 34 34 H 1.07997 * 120.00291 * 179.72468 * 19 18 17 35 35 H 1.07995 * 119.99985 * 0.02562 * 24 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1947 -0.9407 -3.6508 8 6 1.6919 -0.2305 -4.8812 9 1 1.0713 0.6478 -4.7821 10 6 2.0249 -0.7015 -6.1335 11 7 2.7811 -1.7708 -6.2542 12 14 1.4023 0.1791 -7.6586 13 1 0.5778 1.3462 -7.2545 14 1 2.5572 0.6457 -8.4671 15 1 0.5771 -0.7542 -8.4670 16 6 2.0324 -0.7104 1.2304 17 6 1.6938 -2.0324 1.4520 18 6 2.1586 -2.6854 2.5780 19 6 2.9534 -2.0136 3.4881 20 6 3.2875 -0.6904 3.2693 21 7 4.1380 0.0291 4.2438 22 8 4.4322 1.1953 4.0513 23 8 4.5438 -0.5450 5.2385 24 6 2.8270 -0.0387 2.1402 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.1494 0.5390 -2.5435 29 1 3.2846 -0.9410 -3.6510 30 1 1.8310 -1.9682 -3.6506 31 1 3.0150 -2.1024 -7.1352 32 1 1.0691 -2.5559 0.7435 33 1 1.8971 -3.7192 2.7493 34 1 3.3128 -2.5225 4.3702 35 1 3.0875 0.9953 1.9696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700875506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:15 Heat of formation + Delta-G solvation = -28.913599 kcal Electronic energy + Delta-G solvation = -20664.397180 eV Core-core repulsion = 17244.266045 eV Total energy + Delta-G solvation = -3420.131135 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.24636 -40.28033 -38.61338 -36.63402 -34.48913 -34.30702 -32.44400 -31.97784 -30.10978 -27.34018 -26.62879 -24.88319 -23.12716 -22.77849 -21.62728 -19.92965 -18.83974 -18.67109 -17.59671 -17.17883 -16.77298 -16.06636 -15.60874 -15.38512 -14.81770 -14.54773 -14.32685 -13.75393 -13.45709 -13.09510 -12.64338 -12.42438 -12.35973 -12.10270 -11.97332 -11.66072 -11.60924 -11.30028 -11.21734 -11.18762 -11.02217 -10.97634 -10.40215 -9.68071 -9.48596 -9.45993 -9.11035 -8.84451 -8.04746 -6.25908 -4.33445 -0.22092 0.77866 1.29525 1.33222 3.09777 3.14345 3.17405 3.24987 3.27485 3.86945 4.12312 4.26946 4.30110 4.57596 4.75159 4.75670 4.81977 5.01918 5.10564 5.11954 5.24156 5.45119 5.50979 5.59862 5.63600 5.82199 5.96290 6.04811 6.14050 6.39946 7.16646 7.25256 7.38660 7.54487 7.57136 7.86060 8.44988 8.64652 8.90720 9.33544 10.84222 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033272 B = 0.003268 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.352265 B = 8565.946052 C = 8669.468739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.078 4.078 3 H 0.108 0.892 4 C 0.502 3.498 5 O -0.550 6.550 6 N -0.706 5.706 7 C 0.249 3.751 8 C -0.545 4.545 9 H 0.064 0.936 10 C 0.064 3.936 11 N -0.885 5.885 12 Si 0.904 3.096 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.282 1.282 16 C -0.054 4.054 17 C -0.029 4.029 18 C -0.118 4.118 19 C -0.059 4.059 20 C -0.049 4.049 21 N 0.032 4.968 22 O -0.164 6.164 23 O -0.168 6.168 24 C -0.050 4.050 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.392 0.608 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.266 0.734 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 1.962 16.650 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.100 4.100 3 H 0.126 0.874 4 C 0.286 3.714 5 O -0.429 6.429 6 N -0.354 5.354 7 C 0.129 3.871 8 C -0.583 4.583 9 H 0.082 0.918 10 C -0.140 4.140 11 N -0.522 5.522 12 Si 0.731 3.269 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.208 1.208 16 C -0.055 4.055 17 C -0.048 4.048 18 C -0.137 4.137 19 C -0.078 4.078 20 C -0.132 4.132 21 N 0.551 4.449 22 O -0.380 6.380 23 O -0.382 6.382 24 C -0.069 4.069 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.225 0.775 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.333 0.781 16.078 16.957 hybrid contribution -0.173 0.962 -0.769 1.244 sum -5.506 1.744 15.309 16.362 Atomic orbital electron populations 1.21813 0.91561 1.03290 1.03205 1.20416 0.98074 1.00603 0.90904 0.87438 1.20136 0.81437 0.85181 0.84668 1.90691 1.38693 1.26791 1.86724 1.46454 1.51414 1.31134 1.06367 1.19149 0.95383 0.92865 0.79720 1.21241 1.33348 1.13250 0.90500 0.91789 1.24958 0.94764 0.94966 0.99312 1.69981 1.35568 1.22422 1.24214 0.86350 0.78669 0.79492 0.82348 1.19591 1.20742 1.20756 1.19389 0.96971 0.94390 0.94781 1.21506 0.94916 0.93317 0.95020 1.21190 0.97881 1.00866 0.93767 1.21026 0.95283 0.91201 1.00275 1.20997 1.03815 0.94433 0.93957 1.43638 0.99387 1.00912 1.01001 1.94535 1.61233 1.00477 1.81746 1.94516 1.56141 1.69373 1.18206 1.20884 0.93987 1.01395 0.90654 0.91462 0.90790 0.91683 0.77526 0.95462 0.95428 0.92416 0.83999 0.83524 0.83188 0.83084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.90 37.16 0.33 -0.99 16 2 C -0.08 -0.94 2.90 -92.92 -0.27 -1.21 16 3 H 0.11 1.08 7.88 -51.93 -0.41 0.67 16 4 C 0.50 8.83 7.03 -10.99 -0.08 8.75 16 5 O -0.55 -11.89 15.13 5.56 0.08 -11.81 16 6 N -0.71 -13.45 5.44 -61.47 -0.33 -13.79 16 7 C 0.25 6.24 5.43 -5.19 -0.03 6.21 16 8 C -0.55 -14.13 9.28 -34.44 -0.32 -14.45 16 9 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 11 N -0.88 -25.32 13.29 55.43 0.74 -24.58 16 12 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 13 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 C -0.05 -0.65 4.39 -104.63 -0.46 -1.11 16 17 C -0.03 -0.33 7.94 -39.58 -0.31 -0.65 16 18 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 19 C -0.06 -0.61 9.56 -39.59 -0.38 -0.99 16 20 C -0.05 -0.61 6.85 -79.95 -0.55 -1.16 16 21 N 0.03 0.46 4.45 33.96 0.15 0.61 16 22 O -0.16 -2.43 18.45 -29.46 -0.54 -2.98 16 23 O -0.17 -2.40 18.45 -29.46 -0.54 -2.95 16 24 C -0.05 -0.60 9.18 -39.58 -0.36 -0.96 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.66 7.56 -51.93 -0.39 0.27 16 27 H 0.06 0.62 7.37 -51.93 -0.38 0.24 16 28 H 0.39 6.29 7.74 -40.82 -0.32 5.97 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.14 1.57 7.52 -52.49 -0.39 1.18 16 33 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.15 1.29 7.61 -52.49 -0.40 0.89 16 35 H 0.15 1.61 7.50 -52.49 -0.39 1.22 16 LS Contribution 314.60 15.07 4.74 4.74 Total: -1.00 -31.97 314.60 -7.56 -39.54 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -3.91 Total: 2.52 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.92 Total: -6.47 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.55 Total: -37.76 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -1.00 Total: -17.73 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.97 -7.56 -39.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700875506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.624 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds