Wall clock time and date at job start Tue Mar 31 2020 00:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 O 1.21281 * 119.99736 * 240.00187 * 4 2 1 6 6 N 1.34779 * 120.00201 * 59.99469 * 4 2 1 7 7 C 1.46503 * 119.99606 * 180.02562 * 6 4 2 8 8 C 1.50705 * 109.46552 * 179.97438 * 7 6 4 9 9 H 1.08001 * 120.00318 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99785 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99777 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 120.00037 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47227 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47513 * 120.00630 * 12 10 8 15 15 H 1.48500 * 109.47425 * 240.00710 * 12 10 8 16 16 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 17 17 C 1.38261 * 119.99617 * 59.73360 * 16 2 1 18 18 C 1.38217 * 119.99597 * 179.76621 * 17 16 2 19 19 C 1.38253 * 120.00209 * 0.50098 * 18 17 16 20 20 C 1.38213 * 119.99849 * 359.75054 * 19 18 17 21 21 N 1.48016 * 120.00257 * 179.97438 * 20 19 18 22 22 O 1.21798 * 120.00564 * 180.02562 * 21 20 19 23 23 O 1.21806 * 119.99774 * 0.02562 * 21 20 19 24 24 C 1.38207 * 120.00269 * 240.00231 * 16 2 1 25 25 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 26 26 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 0.96991 * 119.99747 * 0.02562 * 6 4 2 29 29 H 1.08992 * 109.47080 * 299.99586 * 7 6 4 30 30 H 1.09001 * 109.47138 * 60.00172 * 7 6 4 31 31 H 0.97000 * 119.99425 * 179.97438 * 11 10 8 32 32 H 1.07993 * 120.00099 * 359.97438 * 17 16 2 33 33 H 1.07997 * 119.99915 * 180.22611 * 18 17 16 34 34 H 1.07997 * 120.00291 * 179.72468 * 19 18 17 35 35 H 1.07995 * 119.99985 * 0.02562 * 24 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1947 -0.9407 -3.6508 8 6 1.6919 -0.2305 -4.8812 9 1 1.0713 0.6478 -4.7821 10 6 2.0249 -0.7015 -6.1335 11 7 2.7811 -1.7708 -6.2542 12 14 1.4023 0.1791 -7.6586 13 1 0.5778 1.3462 -7.2545 14 1 2.5572 0.6457 -8.4671 15 1 0.5771 -0.7542 -8.4670 16 6 2.0324 -0.7104 1.2304 17 6 1.6938 -2.0324 1.4520 18 6 2.1586 -2.6854 2.5780 19 6 2.9534 -2.0136 3.4881 20 6 3.2875 -0.6904 3.2693 21 7 4.1380 0.0291 4.2438 22 8 4.4322 1.1953 4.0513 23 8 4.5438 -0.5450 5.2385 24 6 2.8270 -0.0387 2.1402 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.1494 0.5390 -2.5435 29 1 3.2846 -0.9410 -3.6510 30 1 1.8310 -1.9682 -3.6506 31 1 3.0150 -2.1024 -7.1352 32 1 1.0691 -2.5559 0.7435 33 1 1.8971 -3.7192 2.7493 34 1 3.3128 -2.5225 4.3702 35 1 3.0875 0.9953 1.9696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700875506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:15 Heat of formation + Delta-G solvation = -48.918837 kcal Electronic energy + Delta-G solvation = -20665.264672 eV Core-core repulsion = 17244.266045 eV Total energy + Delta-G solvation = -3420.998627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.28914 -41.40451 -39.86943 -37.71459 -36.19166 -35.45997 -34.31037 -32.87625 -31.10088 -29.16554 -27.63031 -25.96816 -24.73492 -23.72641 -22.88278 -21.31006 -20.01957 -19.75241 -18.70397 -18.64327 -17.74417 -17.48278 -17.14682 -16.61429 -16.26073 -15.93876 -15.44201 -14.78954 -14.71391 -14.30843 -14.08561 -13.91044 -13.42519 -13.22207 -13.19511 -12.90511 -12.79174 -12.74340 -12.63233 -12.33382 -12.23455 -12.22591 -12.12257 -11.46049 -10.82609 -10.77554 -10.54375 -10.19077 -9.84719 -8.30407 -6.46412 -1.23012 -0.07647 0.30636 0.34666 1.43506 1.43986 1.57249 1.70423 2.16533 2.35325 2.63489 3.05319 3.17593 3.45862 3.65611 3.87294 3.90547 3.95590 4.02899 4.16774 4.34919 4.60188 4.68780 4.82443 4.85341 4.98380 5.08851 5.12139 5.20452 5.23691 5.28216 5.46537 5.49894 5.66548 5.84166 6.46963 6.65020 6.86462 7.22764 7.44524 8.81724 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033272 B = 0.003268 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.352265 B = 8565.946052 C = 8669.468739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 H 0.132 0.868 4 C 0.500 3.500 5 O -0.594 6.594 6 N -0.702 5.702 7 C 0.267 3.733 8 C -0.554 4.554 9 H 0.085 0.915 10 C 0.004 3.996 11 N -0.931 5.931 12 Si 0.982 3.018 13 H -0.252 1.252 14 H -0.282 1.282 15 H -0.280 1.280 16 C -0.068 4.068 17 C -0.038 4.038 18 C -0.110 4.110 19 C -0.054 4.054 20 C -0.065 4.065 21 N 0.033 4.967 22 O -0.189 6.189 23 O -0.172 6.172 24 C -0.053 4.053 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.409 0.591 29 H -0.015 1.015 30 H -0.009 1.009 31 H 0.268 0.732 32 H 0.142 0.858 33 H 0.180 0.820 34 H 0.170 0.830 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.264 2.998 17.115 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.084 4.084 3 H 0.150 0.850 4 C 0.287 3.713 5 O -0.475 6.475 6 N -0.352 5.352 7 C 0.144 3.856 8 C -0.592 4.592 9 H 0.103 0.897 10 C -0.196 4.196 11 N -0.570 5.570 12 Si 0.805 3.195 13 H -0.175 1.175 14 H -0.208 1.208 15 H -0.205 1.205 16 C -0.069 4.069 17 C -0.056 4.056 18 C -0.128 4.128 19 C -0.073 4.073 20 C -0.149 4.149 21 N 0.548 4.452 22 O -0.400 6.400 23 O -0.387 6.387 24 C -0.072 4.072 25 H 0.113 0.887 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.245 0.755 29 H 0.003 0.997 30 H 0.009 0.991 31 H 0.077 0.923 32 H 0.160 0.840 33 H 0.197 0.803 34 H 0.187 0.813 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.096 1.889 16.577 18.130 hybrid contribution 0.383 0.530 -0.844 1.067 sum -6.713 2.419 15.733 17.276 Atomic orbital electron populations 1.21859 0.89145 1.03677 1.04892 1.20365 0.99860 1.00754 0.87448 0.84983 1.21138 0.80019 0.84537 0.85587 1.90666 1.40459 1.28922 1.87459 1.46156 1.51964 1.31576 1.05465 1.18543 0.92798 0.91836 0.82447 1.21658 1.33127 1.13661 0.90727 0.89704 1.26030 0.94776 0.95614 1.03131 1.70137 1.37262 1.24420 1.25141 0.85151 0.78074 0.78631 0.77624 1.17505 1.20757 1.20523 1.19434 0.97672 0.94895 0.94878 1.21718 0.94967 0.93310 0.95636 1.21536 0.96603 1.02126 0.92519 1.21349 0.94584 0.90423 1.00929 1.21200 1.04416 0.95230 0.94009 1.43880 0.99339 1.00842 1.01135 1.94526 1.62207 1.01124 1.82113 1.94494 1.56314 1.69250 1.18677 1.20976 0.93739 1.01945 0.90551 0.88729 0.90129 0.92025 0.75462 0.99665 0.99076 0.92317 0.84025 0.80284 0.81274 0.82262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.90 71.98 0.64 -1.57 16 2 C -0.06 -1.39 2.90 -12.29 -0.04 -1.43 16 3 H 0.13 2.30 7.88 -2.39 -0.02 2.28 16 4 C 0.50 17.50 7.03 87.66 0.62 18.12 16 5 O -0.59 -26.26 15.13 -3.03 -0.05 -26.30 16 6 N -0.70 -26.72 5.44 -466.78 -2.54 -29.26 16 7 C 0.27 13.82 5.43 85.63 0.46 14.28 16 8 C -0.55 -28.73 9.28 25.60 0.24 -28.49 16 9 H 0.08 3.95 7.60 -2.91 -0.02 3.92 16 10 C 0.00 0.22 5.46 84.65 0.46 0.68 16 11 N -0.93 -54.68 13.29 21.45 0.28 -54.40 16 12 Si 0.98 40.96 29.54 68.60 2.03 42.98 16 13 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 14 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 15 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 16 C -0.07 -1.52 4.39 -19.87 -0.09 -1.61 16 17 C -0.04 -0.80 7.94 22.27 0.18 -0.63 16 18 C -0.11 -1.84 10.05 22.27 0.22 -1.62 16 19 C -0.05 -1.01 9.56 22.27 0.21 -0.80 16 20 C -0.07 -1.54 6.85 36.37 0.25 -1.30 16 21 N 0.03 0.91 4.45 -46.46 -0.21 0.71 16 22 O -0.19 -5.55 18.45 18.89 0.35 -5.20 16 23 O -0.17 -4.77 18.45 18.88 0.35 -4.43 16 24 C -0.05 -1.19 9.18 22.27 0.20 -0.99 16 25 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.20 7.56 -2.39 -0.02 1.18 16 27 H 0.06 1.04 7.37 -2.39 -0.02 1.02 16 28 H 0.41 12.55 7.74 -92.71 -0.72 11.83 16 29 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.14 2.98 7.52 -2.91 -0.02 2.96 16 33 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.17 2.48 7.61 -2.91 -0.02 2.46 16 35 H 0.16 3.20 7.50 -2.91 -0.02 3.18 16 Total: -1.00 -71.76 314.60 3.99 -67.78 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.41 Total: 13.48 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 3.37 Total: -5.35 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -2.46 Total: -82.96 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: 0.65 Total: -35.93 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Total: -71.76 3.99 -67.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700875506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.856 kcal (2) G-P(sol) polarization free energy of solvation -71.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds