Wall clock time and date at job start Tue Mar 31 2020 01:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46827 * 2 1 4 4 C 1.50696 * 109.47174 * 240.00000 * 2 1 3 5 5 H 1.07999 * 119.99642 * 239.99374 * 4 2 1 6 6 C 1.37877 * 120.00125 * 59.99812 * 4 2 1 7 7 N 1.31507 * 119.99961 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99760 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47135 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.47353 * 299.99956 * 8 6 4 11 11 H 1.48504 * 109.47162 * 60.00281 * 8 6 4 12 12 O 1.45199 * 109.47415 * 119.99458 * 2 1 3 13 13 C 1.34757 * 117.00359 * 270.00867 * 12 2 1 14 14 O 1.21504 * 119.99675 * 359.97438 * 13 12 2 15 15 C 1.47438 * 120.00058 * 179.97438 * 13 12 2 16 16 C 1.39818 * 120.08129 * 359.72467 * 15 13 12 17 17 C 1.37642 * 119.91894 * 179.72031 * 16 15 13 18 18 C 1.39153 * 120.07965 * 0.55173 * 17 16 15 19 19 N 1.39402 * 119.91880 * 179.69987 * 18 17 16 20 20 C 1.34780 * 119.99570 * 213.56078 * 19 18 17 21 21 N 1.34773 * 119.99588 * 185.31947 * 20 19 18 22 22 O 1.21572 * 120.00432 * 5.31762 * 20 19 18 23 23 C 1.39152 * 120.15775 * 359.72131 * 18 17 16 24 24 C 1.37635 * 120.07993 * 359.97438 * 23 18 17 25 25 H 1.09004 * 109.46643 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47158 * 299.99811 * 1 2 3 27 27 H 1.09001 * 109.47194 * 60.00302 * 1 2 3 28 28 H 0.96999 * 119.99770 * 180.02562 * 7 6 4 29 29 H 1.08000 * 120.03994 * 359.97438 * 16 15 13 30 30 H 1.08000 * 119.95802 * 180.24780 * 17 16 15 31 31 H 0.96998 * 120.00186 * 33.55623 * 19 18 17 32 32 H 0.97003 * 120.00411 * 0.02562 * 21 20 19 33 33 H 0.96998 * 119.99923 * 179.97438 * 21 20 19 34 34 H 1.08000 * 119.96050 * 179.97438 * 23 18 17 35 35 H 1.08002 * 120.03887 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8280 -0.4194 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8281 -2.5199 -4.0080 12 8 2.0141 -0.6843 1.1856 13 6 2.2179 0.0671 2.2855 14 8 1.9976 1.2616 2.2545 15 6 2.7082 -0.5602 3.5264 16 6 2.9568 -1.9355 3.5656 17 6 3.4199 -2.5167 4.7241 18 6 3.6299 -1.7392 5.8589 19 7 4.0931 -2.3323 7.0323 20 6 3.6918 -1.8609 8.2295 21 7 4.2208 -2.3627 9.3629 22 8 2.8527 -0.9831 8.2870 23 6 3.3782 -0.3710 5.8252 24 6 2.9208 0.2180 4.6684 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7081 1.1606 -3.4844 29 1 2.7895 -2.5405 2.6867 30 1 3.6160 -3.5784 4.7539 31 1 4.7041 -3.0843 6.9872 32 1 4.8907 -3.0629 9.3171 33 1 3.9323 -2.0232 10.2246 34 1 3.5418 0.2294 6.7079 35 1 2.7253 1.2799 4.6431 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709476.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:28 Heat of formation + Delta-G solvation = -91.814889 kcal Electronic energy + Delta-G solvation = -20589.836180 eV Core-core repulsion = 17166.977441 eV Total energy + Delta-G solvation = -3422.858739 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.89046 -39.58926 -38.22540 -35.66320 -34.91382 -34.01290 -33.21033 -30.99237 -30.09093 -29.10703 -25.29278 -24.32038 -23.06865 -21.69145 -21.14184 -19.72169 -18.75927 -18.34470 -17.44076 -16.53690 -16.37087 -15.71031 -15.64666 -14.93574 -14.88537 -14.67767 -14.18664 -14.16242 -13.38209 -13.15214 -12.87191 -12.43955 -12.10414 -11.84899 -11.25719 -11.20745 -11.01269 -10.81065 -10.71510 -10.41942 -10.33371 -10.25376 -10.14188 -9.64981 -9.49018 -8.95807 -8.87571 -8.46393 -8.21652 -6.15320 -4.22296 0.86558 1.45268 2.38652 2.67931 3.19853 3.28124 3.31409 3.33742 3.71790 3.95830 4.06686 4.36350 4.84044 4.97130 5.17477 5.31157 5.36679 5.45265 5.66807 5.99350 6.05576 6.20149 6.34552 6.41818 6.47673 6.58168 6.70590 6.92417 6.95183 6.96888 7.20912 7.42096 7.62615 7.76901 7.97144 8.13063 8.17485 8.67235 8.91576 9.42833 10.92173 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.042036 B = 0.003252 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.939730 B = 8608.672368 C = 9040.809384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.274 1.274 12 O -0.352 6.352 13 C 0.496 3.504 14 O -0.519 6.519 15 C -0.129 4.129 16 C -0.040 4.040 17 C -0.162 4.162 18 C 0.184 3.816 19 N -0.683 5.683 20 C 0.704 3.296 21 N -0.862 5.862 22 O -0.570 6.570 23 C -0.136 4.136 24 C -0.039 4.039 25 H 0.037 0.963 26 H 0.016 0.984 27 H 0.099 0.901 28 H 0.267 0.733 29 H 0.146 0.854 30 H 0.131 0.869 31 H 0.408 0.592 32 H 0.398 0.602 33 H 0.418 0.582 34 H 0.140 0.860 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.484 -9.581 20.420 24.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.200 1.200 12 O -0.268 6.268 13 C 0.341 3.659 14 O -0.410 6.410 15 C -0.131 4.131 16 C -0.059 4.059 17 C -0.183 4.183 18 C 0.089 3.911 19 N -0.331 5.331 20 C 0.402 3.598 21 N -0.431 5.431 22 O -0.446 6.446 23 C -0.156 4.156 24 C -0.058 4.058 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.164 0.836 30 H 0.149 0.851 31 H 0.244 0.756 32 H 0.226 0.774 33 H 0.251 0.749 34 H 0.158 0.842 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.613 -8.372 20.157 23.116 hybrid contribution 0.718 -0.936 -0.478 1.273 sum 8.331 -9.309 19.679 23.309 Atomic orbital electron populations 1.22166 0.97543 1.00131 1.01449 1.20641 0.91402 0.93980 0.77625 0.93504 1.20983 1.32524 1.13488 0.88885 0.91338 1.24888 0.94958 0.95111 0.99050 1.69891 1.35985 1.22556 1.24255 0.86327 0.79191 0.79509 0.81041 1.21061 1.20002 1.19956 1.86532 1.75914 1.43221 1.21143 1.20948 0.75002 0.85284 0.84677 1.90768 1.49064 1.16325 1.84862 1.19444 1.06358 0.94398 0.92891 1.21350 0.93031 0.93768 0.97747 1.20783 1.05188 0.99561 0.92752 1.17659 0.96706 0.91862 0.84916 1.42472 1.50214 1.36818 1.03603 1.15955 0.81237 0.81917 0.80665 1.42970 1.47457 1.44989 1.07666 1.91037 1.34582 1.33069 1.85888 1.21024 1.02887 0.92929 0.98770 1.21174 0.93703 1.00642 0.90282 0.94420 0.96445 0.88240 0.92349 0.83595 0.85107 0.75626 0.77358 0.74893 0.84189 0.84231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 9.33 37.16 0.35 -3.69 16 2 C 0.22 5.92 2.56 -27.88 -0.07 5.85 16 3 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 4 C -0.52 -14.74 8.90 -34.44 -0.31 -15.05 16 5 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.55 11.32 55.43 0.63 -24.92 16 8 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 O -0.35 -8.58 9.10 -40.65 -0.37 -8.95 16 13 C 0.50 11.10 7.86 34.48 0.27 11.37 16 14 O -0.52 -12.93 15.60 -19.27 -0.30 -13.23 16 15 C -0.13 -2.27 5.87 -104.97 -0.62 -2.88 16 16 C -0.04 -0.58 9.60 -39.21 -0.38 -0.96 16 17 C -0.16 -1.85 9.94 -39.46 -0.39 -2.24 16 18 C 0.18 2.17 6.27 -83.74 -0.53 1.64 16 19 N -0.68 -5.59 5.32 -14.22 -0.08 -5.67 16 20 C 0.70 6.69 8.56 -86.92 -0.74 5.95 16 21 N -0.86 -3.83 8.88 27.63 0.25 -3.59 16 22 O -0.57 -8.22 14.86 5.30 0.08 -8.15 16 23 C -0.14 -1.89 8.62 -39.46 -0.34 -2.23 16 24 C -0.04 -0.62 9.58 -39.21 -0.38 -1.00 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.15 2.08 7.60 -52.49 -0.40 1.68 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.41 1.71 8.83 -40.82 -0.36 1.35 16 32 H 0.40 0.40 8.85 -40.82 -0.36 0.04 16 33 H 0.42 1.52 8.93 -40.82 -0.36 1.15 16 34 H 0.14 1.95 6.41 -52.49 -0.34 1.61 16 35 H 0.14 2.20 7.64 -52.49 -0.40 1.80 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -35.42 310.30 -7.09 -42.51 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -3.72 Total: 2.79 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -3.23 Total: -1.61 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.80 Total: -34.18 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.59 Total: -30.33 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.42 -7.09 -42.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709476.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.306 kcal (2) G-P(sol) polarization free energy of solvation -35.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds