Wall clock time and date at job start Tue Mar 31 2020 01:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46827 * 2 1 4 4 C 1.50696 * 109.47174 * 240.00000 * 2 1 3 5 5 H 1.07999 * 119.99642 * 239.99374 * 4 2 1 6 6 C 1.37877 * 120.00125 * 59.99812 * 4 2 1 7 7 N 1.31507 * 119.99961 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99760 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47135 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.47353 * 299.99956 * 8 6 4 11 11 H 1.48504 * 109.47162 * 60.00281 * 8 6 4 12 12 O 1.45199 * 109.47415 * 119.99458 * 2 1 3 13 13 C 1.34757 * 117.00359 * 270.00867 * 12 2 1 14 14 O 1.21504 * 119.99675 * 359.97438 * 13 12 2 15 15 C 1.47438 * 120.00058 * 179.97438 * 13 12 2 16 16 C 1.39818 * 120.08129 * 359.72467 * 15 13 12 17 17 C 1.37642 * 119.91894 * 179.72031 * 16 15 13 18 18 C 1.39153 * 120.07965 * 0.55173 * 17 16 15 19 19 N 1.39402 * 119.91880 * 179.69987 * 18 17 16 20 20 C 1.34780 * 119.99570 * 213.56078 * 19 18 17 21 21 N 1.34773 * 119.99588 * 185.31947 * 20 19 18 22 22 O 1.21572 * 120.00432 * 5.31762 * 20 19 18 23 23 C 1.39152 * 120.15775 * 359.72131 * 18 17 16 24 24 C 1.37635 * 120.07993 * 359.97438 * 23 18 17 25 25 H 1.09004 * 109.46643 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47158 * 299.99811 * 1 2 3 27 27 H 1.09001 * 109.47194 * 60.00302 * 1 2 3 28 28 H 0.96999 * 119.99770 * 180.02562 * 7 6 4 29 29 H 1.08000 * 120.03994 * 359.97438 * 16 15 13 30 30 H 1.08000 * 119.95802 * 180.24780 * 17 16 15 31 31 H 0.96998 * 120.00186 * 33.55623 * 19 18 17 32 32 H 0.97003 * 120.00411 * 0.02562 * 21 20 19 33 33 H 0.96998 * 119.99923 * 179.97438 * 21 20 19 34 34 H 1.08000 * 119.96050 * 179.97438 * 23 18 17 35 35 H 1.08002 * 120.03887 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8280 -0.4194 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8281 -2.5199 -4.0080 12 8 2.0141 -0.6843 1.1856 13 6 2.2179 0.0671 2.2855 14 8 1.9976 1.2616 2.2545 15 6 2.7082 -0.5602 3.5264 16 6 2.9568 -1.9355 3.5656 17 6 3.4199 -2.5167 4.7241 18 6 3.6299 -1.7392 5.8589 19 7 4.0931 -2.3323 7.0323 20 6 3.6918 -1.8609 8.2295 21 7 4.2208 -2.3627 9.3629 22 8 2.8527 -0.9831 8.2870 23 6 3.3782 -0.3710 5.8252 24 6 2.9208 0.2180 4.6684 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7081 1.1606 -3.4844 29 1 2.7895 -2.5405 2.6867 30 1 3.6160 -3.5784 4.7539 31 1 4.7041 -3.0843 6.9872 32 1 4.8907 -3.0629 9.3171 33 1 3.9323 -2.0232 10.2246 34 1 3.5418 0.2294 6.7079 35 1 2.7253 1.2799 4.6431 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709476.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:28 Heat of formation + Delta-G solvation = -118.156332 kcal Electronic energy + Delta-G solvation = -20590.978431 eV Core-core repulsion = 17166.977441 eV Total energy + Delta-G solvation = -3424.000990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.82482 -41.19351 -39.43360 -37.54190 -35.91134 -35.31616 -34.66187 -32.16093 -31.80485 -30.57551 -27.45786 -25.62958 -24.24867 -23.16277 -22.27012 -21.39913 -19.55397 -19.19341 -19.04632 -18.44136 -17.69335 -16.98042 -16.81255 -16.56708 -16.46902 -15.76283 -15.46692 -15.20089 -14.88946 -14.44203 -14.34140 -14.02772 -13.76992 -13.61700 -13.18769 -12.98261 -12.80200 -12.39600 -12.33948 -12.16044 -11.69294 -11.60405 -11.48426 -11.32091 -10.99700 -10.73535 -10.58887 -10.05561 -9.24938 -8.27265 -6.44726 -0.37107 0.35996 1.43040 1.47658 1.48595 1.55921 1.70924 1.98672 2.05775 2.43364 2.80252 3.03419 3.45694 3.78632 3.89232 3.95610 4.25268 4.35849 4.49439 4.52256 4.78373 4.81431 4.97258 5.03046 5.12114 5.17948 5.31848 5.40506 5.48844 5.62081 5.78849 5.87838 5.90126 5.94573 6.06279 6.60323 6.91908 6.93829 7.26745 7.49708 8.80713 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.042036 B = 0.003252 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.939730 B = 8608.672368 C = 9040.809384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.217 3.783 3 H 0.005 0.995 4 C -0.548 4.548 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.987 3.013 9 H -0.279 1.279 10 H -0.267 1.267 11 H -0.261 1.261 12 O -0.353 6.353 13 C 0.491 3.509 14 O -0.558 6.558 15 C -0.161 4.161 16 C -0.038 4.038 17 C -0.143 4.143 18 C 0.203 3.797 19 N -0.666 5.666 20 C 0.698 3.302 21 N -0.835 5.835 22 O -0.623 6.623 23 C -0.142 4.142 24 C -0.044 4.044 25 H 0.048 0.952 26 H 0.019 0.981 27 H 0.082 0.918 28 H 0.271 0.729 29 H 0.149 0.851 30 H 0.179 0.821 31 H 0.432 0.568 32 H 0.419 0.581 33 H 0.426 0.574 34 H 0.139 0.861 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.094 -12.904 21.648 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.164 3.836 3 H 0.023 0.977 4 C -0.585 4.585 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.809 3.191 9 H -0.204 1.204 10 H -0.192 1.192 11 H -0.186 1.186 12 O -0.269 6.269 13 C 0.339 3.661 14 O -0.452 6.452 15 C -0.163 4.163 16 C -0.056 4.056 17 C -0.163 4.163 18 C 0.106 3.894 19 N -0.316 5.316 20 C 0.397 3.603 21 N -0.404 5.404 22 O -0.502 6.502 23 C -0.163 4.163 24 C -0.063 4.063 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.166 0.834 30 H 0.196 0.804 31 H 0.272 0.728 32 H 0.251 0.749 33 H 0.260 0.740 34 H 0.157 0.843 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.282 -11.768 21.456 26.172 hybrid contribution 0.285 0.067 -0.630 0.695 sum 9.567 -11.701 20.825 25.732 Atomic orbital electron populations 1.21997 0.96817 1.00525 1.00705 1.20381 0.92018 0.92117 0.79096 0.97716 1.21269 1.33512 1.14032 0.89681 0.90986 1.25895 0.94697 0.95681 1.02300 1.70025 1.36589 1.23772 1.25311 0.85178 0.78789 0.78636 0.76455 1.20376 1.19218 1.18569 1.86513 1.76280 1.43025 1.21103 1.21865 0.73938 0.85032 0.85265 1.90732 1.51041 1.17996 1.85414 1.19230 1.10056 0.96045 0.90971 1.21449 0.92784 0.92201 0.99209 1.21105 1.02864 1.01506 0.90815 1.17739 0.94353 0.91065 0.86236 1.42287 1.50062 1.37059 1.02175 1.16195 0.80927 0.81492 0.81693 1.42747 1.46713 1.44532 1.06439 1.91023 1.37068 1.35472 1.86654 1.21033 1.03207 0.94323 0.97698 1.21082 0.94408 1.00161 0.90691 0.93271 0.96158 0.89923 0.91983 0.83363 0.80411 0.72764 0.74908 0.74047 0.84290 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.70 9.33 71.98 0.67 -7.03 16 2 C 0.22 12.45 2.56 29.85 0.08 12.53 16 3 H 0.01 0.32 7.16 -2.39 -0.02 0.31 16 4 C -0.55 -31.60 8.90 25.60 0.23 -31.37 16 5 H 0.07 4.00 7.81 -2.91 -0.02 3.97 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -53.92 11.32 21.45 0.24 -53.67 16 8 Si 0.99 43.09 29.54 68.60 2.03 45.12 16 9 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 11 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 12 O -0.35 -17.89 9.10 -56.68 -0.52 -18.41 16 13 C 0.49 23.17 7.86 70.25 0.55 23.72 16 14 O -0.56 -29.85 15.60 19.82 0.31 -29.54 16 15 C -0.16 -5.80 5.87 -20.09 -0.12 -5.92 16 16 C -0.04 -1.04 9.60 22.51 0.22 -0.83 16 17 C -0.14 -2.73 9.94 22.35 0.22 -2.51 16 18 C 0.20 4.20 6.27 38.38 0.24 4.44 16 19 N -0.67 -8.28 5.32 -317.17 -1.69 -9.97 16 20 C 0.70 11.22 8.56 179.05 1.53 12.75 16 21 N -0.83 -4.41 8.88 -184.76 -1.64 -6.06 16 22 O -0.62 -17.08 14.86 -3.94 -0.06 -17.14 16 23 C -0.14 -3.86 8.62 22.35 0.19 -3.66 16 24 C -0.04 -1.45 9.58 22.51 0.22 -1.24 16 25 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.08 4.73 6.07 -2.39 -0.01 4.72 16 28 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 29 H 0.15 4.03 7.60 -2.91 -0.02 4.01 16 30 H 0.18 1.79 8.06 -2.91 -0.02 1.76 16 31 H 0.43 1.35 8.83 -92.71 -0.82 0.53 16 32 H 0.42 -1.04 8.85 -92.71 -0.82 -1.86 16 33 H 0.43 1.76 8.93 -92.71 -0.83 0.93 16 34 H 0.14 3.84 6.41 -2.91 -0.02 3.82 16 35 H 0.13 4.34 7.64 -2.91 -0.02 4.31 16 Total: -1.00 -81.21 310.30 1.86 -79.35 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -1.30 Total: 8.22 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 4.48 Total: 2.11 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -3.09 Total: -69.70 kcal Atomic # 8 Polarization: -64.83 SS G_CDS: -0.27 Total: -65.09 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -81.21 1.86 -79.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709476.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.808 kcal (2) G-P(sol) polarization free energy of solvation -81.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds