Wall clock time and date at job start Tue Mar 31 2020 01:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47142 * 2 1 4 4 C 1.50697 * 109.47430 * 120.00765 * 2 1 3 5 5 H 1.07998 * 120.00318 * 119.99903 * 4 2 1 6 6 C 1.37881 * 119.99675 * 299.99493 * 4 2 1 7 7 N 1.31517 * 119.99918 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00150 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47185 * 90.00086 * 8 6 4 10 10 H 1.48498 * 109.47202 * 210.00191 * 8 6 4 11 11 H 1.48500 * 109.47204 * 330.00282 * 8 6 4 12 12 O 1.45205 * 109.46709 * 240.00131 * 2 1 3 13 13 C 1.34756 * 116.99515 * 90.00239 * 12 2 1 14 14 O 1.21505 * 120.00443 * 359.97438 * 13 12 2 15 15 C 1.47454 * 119.99480 * 179.97438 * 13 12 2 16 16 C 1.39823 * 120.07502 * 180.02562 * 15 13 12 17 17 C 1.37637 * 119.91763 * 179.69989 * 16 15 13 18 18 C 1.39155 * 120.07792 * 0.25273 * 17 16 15 19 19 N 1.39406 * 119.91943 * 180.02562 * 18 17 16 20 20 C 1.34771 * 119.99918 * 33.52853 * 19 18 17 21 21 N 1.34774 * 120.00338 * 185.32126 * 20 19 18 22 22 O 1.21583 * 120.00048 * 5.32686 * 20 19 18 23 23 C 1.39153 * 120.15940 * 0.02562 * 18 17 16 24 24 C 1.37638 * 120.08153 * 359.97438 * 23 18 17 25 25 H 1.09002 * 109.47643 * 59.99544 * 1 2 3 26 26 H 1.09010 * 109.47393 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47076 * 299.99603 * 1 2 3 28 28 H 0.97002 * 120.00056 * 179.97438 * 7 6 4 29 29 H 1.07995 * 120.03765 * 359.96723 * 16 15 13 30 30 H 1.08001 * 119.95918 * 180.27087 * 17 16 15 31 31 H 0.96999 * 119.99773 * 213.53850 * 19 18 17 32 32 H 0.97010 * 119.99664 * 0.02562 * 21 20 19 33 33 H 0.96997 * 120.00781 * 180.02562 * 21 20 19 34 34 H 1.08000 * 119.95482 * 180.02562 * 23 18 17 35 35 H 1.07995 * 120.03611 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.6306 -0.5443 4.4117 10 1 1.3446 -0.9493 5.1122 11 1 2.4881 -2.5656 3.7120 12 8 2.0138 -0.6845 -1.1856 13 6 2.2177 0.0671 -2.2854 14 8 1.9968 1.2615 -2.2547 15 6 2.7090 -0.5602 -3.5262 16 6 2.9217 0.2181 -4.6681 17 6 3.3862 -0.3696 -5.8228 18 6 3.6391 -1.7376 -5.8560 19 7 4.1101 -2.3294 -7.0270 20 6 4.9295 -1.6420 -7.8470 21 7 5.2989 -2.1720 -9.0299 22 8 5.3357 -0.5438 -7.5196 23 6 3.4231 -2.5162 -4.7231 24 6 2.9587 -1.9353 -3.5650 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7083 1.1607 3.4845 29 1 2.7258 1.2799 -4.6429 30 1 3.5549 0.2317 -6.7039 31 1 3.8479 -3.2358 -7.2517 32 1 4.9745 -3.0481 -9.2912 33 1 5.8889 -1.6775 -9.6199 34 1 3.6209 -3.5775 -4.7524 35 1 2.7917 -2.5402 -2.6861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:30 Heat of formation + Delta-G solvation = -91.829147 kcal Electronic energy + Delta-G solvation = -20590.913766 eV Core-core repulsion = 17168.054408 eV Total energy + Delta-G solvation = -3422.859358 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.88834 -39.58858 -38.22467 -35.66352 -34.91223 -34.01085 -33.20852 -30.99275 -30.09110 -29.10865 -25.29510 -24.31975 -23.06852 -21.69129 -21.14226 -19.72284 -18.75789 -18.34344 -17.44106 -16.54252 -16.37039 -15.70637 -15.63493 -14.97821 -14.84110 -14.67887 -14.19762 -14.16239 -13.38206 -13.14395 -12.84462 -12.44663 -12.17581 -11.78964 -11.31263 -11.14451 -11.03649 -10.83884 -10.69877 -10.39330 -10.32968 -10.25672 -10.13939 -9.65055 -9.49651 -8.95821 -8.86758 -8.46521 -8.21730 -6.15395 -4.22148 0.86570 1.45234 2.38721 2.68081 3.19816 3.27014 3.32115 3.35887 3.71850 3.95904 4.06713 4.36654 4.84022 4.97184 5.17616 5.31194 5.36670 5.45301 5.66756 5.99384 6.05595 6.20133 6.34694 6.41853 6.47751 6.58073 6.69889 6.92272 6.94088 6.96325 7.20482 7.42212 7.62835 7.76516 7.97018 8.13302 8.17372 8.67366 8.91916 9.43052 10.92145 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038266 B = 0.003270 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.552238 B = 8561.594808 C = 8916.113508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.352 6.352 13 C 0.496 3.504 14 O -0.519 6.519 15 C -0.129 4.129 16 C -0.039 4.039 17 C -0.136 4.136 18 C 0.184 3.816 19 N -0.683 5.683 20 C 0.703 3.297 21 N -0.862 5.862 22 O -0.570 6.570 23 C -0.162 4.162 24 C -0.040 4.040 25 H 0.016 0.984 26 H 0.037 0.963 27 H 0.099 0.901 28 H 0.266 0.734 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.408 0.592 32 H 0.398 0.602 33 H 0.418 0.582 34 H 0.131 0.869 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.016 -10.207 -21.505 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.268 6.268 13 C 0.341 3.659 14 O -0.410 6.410 15 C -0.131 4.131 16 C -0.058 4.058 17 C -0.156 4.156 18 C 0.088 3.912 19 N -0.331 5.331 20 C 0.402 3.598 21 N -0.431 5.431 22 O -0.446 6.446 23 C -0.183 4.183 24 C -0.059 4.059 25 H 0.035 0.965 26 H 0.056 0.944 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.244 0.756 32 H 0.226 0.774 33 H 0.251 0.749 34 H 0.149 0.851 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.129 -8.831 -20.940 23.297 hybrid contribution 0.219 -1.008 0.328 1.083 sum 5.348 -9.839 -20.612 23.457 Atomic orbital electron populations 1.22162 0.97530 1.00107 1.01439 1.20648 0.91402 0.94004 0.77650 0.93500 1.21025 1.32416 1.13475 0.88873 0.91282 1.24893 0.94948 0.95129 0.99065 1.69905 1.36050 1.22616 1.24140 0.86269 0.78539 0.79868 0.81421 1.20415 1.20983 1.19603 1.86535 1.75922 1.43205 1.21137 1.20953 0.74995 0.85283 0.84685 1.90768 1.49085 1.16310 1.84855 1.19447 1.06369 0.94315 0.92951 1.21176 0.93625 1.00548 0.90460 1.21026 1.01431 0.93599 0.99547 1.17662 0.95644 0.92846 0.85000 1.42470 1.50108 1.18390 1.22135 1.15959 0.78957 0.84205 0.80671 1.42971 1.56048 1.24077 1.19987 1.91042 1.58753 1.19953 1.74806 1.20785 1.05857 1.00200 0.91437 1.21346 0.93115 0.93751 0.97689 0.96464 0.94423 0.88242 0.92415 0.84232 0.84187 0.75634 0.77365 0.74888 0.85108 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.33 37.15 0.35 -3.65 16 2 C 0.22 5.91 2.56 -27.89 -0.07 5.84 16 3 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 4 C -0.52 -14.76 8.90 -34.44 -0.31 -15.06 16 5 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.58 11.32 55.43 0.63 -24.95 16 8 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 O -0.35 -8.57 9.10 -40.64 -0.37 -8.94 16 13 C 0.50 11.09 7.86 34.48 0.27 11.37 16 14 O -0.52 -12.93 15.60 -19.27 -0.30 -13.23 16 15 C -0.13 -2.26 5.88 -104.96 -0.62 -2.88 16 16 C -0.04 -0.62 9.58 -39.21 -0.38 -1.00 16 17 C -0.14 -1.89 8.62 -39.46 -0.34 -2.23 16 18 C 0.18 2.17 6.27 -83.73 -0.53 1.64 16 19 N -0.68 -5.59 5.32 -14.22 -0.08 -5.67 16 20 C 0.70 6.72 8.56 -86.93 -0.74 5.98 16 21 N -0.86 -3.86 8.88 27.63 0.25 -3.61 16 22 O -0.57 -8.27 14.86 5.29 0.08 -8.19 16 23 C -0.16 -1.85 9.94 -39.46 -0.39 -2.24 16 24 C -0.04 -0.59 9.60 -39.21 -0.38 -0.96 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 27 H 0.10 2.73 6.07 -51.93 -0.32 2.41 16 28 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.14 2.20 7.64 -52.49 -0.40 1.80 16 30 H 0.14 1.95 6.41 -52.49 -0.34 1.61 16 31 H 0.41 1.70 8.83 -40.82 -0.36 1.34 16 32 H 0.40 0.41 8.85 -40.82 -0.36 0.04 16 33 H 0.42 1.54 8.93 -40.82 -0.36 1.17 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.15 2.08 7.60 -52.49 -0.40 1.69 16 LS Contribution 310.31 15.07 4.68 4.68 Total: -1.00 -35.52 310.31 -7.09 -42.60 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -3.72 Total: 2.67 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -3.23 Total: -1.58 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.80 Total: -34.23 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.59 Total: -30.37 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.52 -7.09 -42.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.224 kcal (2) G-P(sol) polarization free energy of solvation -35.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds