Wall clock time and date at job start Tue Mar 31 2020 01:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47142 * 2 1 4 4 C 1.50697 * 109.47430 * 120.00765 * 2 1 3 5 5 H 1.07998 * 120.00318 * 119.99903 * 4 2 1 6 6 C 1.37881 * 119.99675 * 299.99493 * 4 2 1 7 7 N 1.31517 * 119.99918 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00150 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47185 * 90.00086 * 8 6 4 10 10 H 1.48498 * 109.47202 * 210.00191 * 8 6 4 11 11 H 1.48500 * 109.47204 * 330.00282 * 8 6 4 12 12 O 1.45205 * 109.46709 * 240.00131 * 2 1 3 13 13 C 1.34756 * 116.99515 * 90.00239 * 12 2 1 14 14 O 1.21505 * 120.00443 * 359.97438 * 13 12 2 15 15 C 1.47454 * 119.99480 * 179.97438 * 13 12 2 16 16 C 1.39823 * 120.07502 * 180.02562 * 15 13 12 17 17 C 1.37637 * 119.91763 * 179.69989 * 16 15 13 18 18 C 1.39155 * 120.07792 * 0.25273 * 17 16 15 19 19 N 1.39406 * 119.91943 * 180.02562 * 18 17 16 20 20 C 1.34771 * 119.99918 * 33.52853 * 19 18 17 21 21 N 1.34774 * 120.00338 * 185.32126 * 20 19 18 22 22 O 1.21583 * 120.00048 * 5.32686 * 20 19 18 23 23 C 1.39153 * 120.15940 * 0.02562 * 18 17 16 24 24 C 1.37638 * 120.08153 * 359.97438 * 23 18 17 25 25 H 1.09002 * 109.47643 * 59.99544 * 1 2 3 26 26 H 1.09010 * 109.47393 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47076 * 299.99603 * 1 2 3 28 28 H 0.97002 * 120.00056 * 179.97438 * 7 6 4 29 29 H 1.07995 * 120.03765 * 359.96723 * 16 15 13 30 30 H 1.08001 * 119.95918 * 180.27087 * 17 16 15 31 31 H 0.96999 * 119.99773 * 213.53850 * 19 18 17 32 32 H 0.97010 * 119.99664 * 0.02562 * 21 20 19 33 33 H 0.96997 * 120.00781 * 180.02562 * 21 20 19 34 34 H 1.08000 * 119.95482 * 180.02562 * 23 18 17 35 35 H 1.07995 * 120.03611 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.6306 -0.5443 4.4117 10 1 1.3446 -0.9493 5.1122 11 1 2.4881 -2.5656 3.7120 12 8 2.0138 -0.6845 -1.1856 13 6 2.2177 0.0671 -2.2854 14 8 1.9968 1.2615 -2.2547 15 6 2.7090 -0.5602 -3.5262 16 6 2.9217 0.2181 -4.6681 17 6 3.3862 -0.3696 -5.8228 18 6 3.6391 -1.7376 -5.8560 19 7 4.1101 -2.3294 -7.0270 20 6 4.9295 -1.6420 -7.8470 21 7 5.2989 -2.1720 -9.0299 22 8 5.3357 -0.5438 -7.5196 23 6 3.4231 -2.5162 -4.7231 24 6 2.9587 -1.9353 -3.5650 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7083 1.1607 3.4845 29 1 2.7258 1.2799 -4.6429 30 1 3.5549 0.2317 -6.7039 31 1 3.8479 -3.2358 -7.2517 32 1 4.9745 -3.0481 -9.2912 33 1 5.8889 -1.6775 -9.6199 34 1 3.6209 -3.5775 -4.7524 35 1 2.7917 -2.5402 -2.6861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:30 Heat of formation + Delta-G solvation = -118.273964 kcal Electronic energy + Delta-G solvation = -20592.060500 eV Core-core repulsion = 17168.054408 eV Total energy + Delta-G solvation = -3424.006091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82461 -41.19286 -39.43350 -37.54140 -35.91190 -35.31698 -34.66253 -32.16095 -31.80378 -30.57471 -27.45794 -25.62919 -24.24851 -23.16245 -22.27128 -21.39915 -19.55399 -19.19424 -19.04737 -18.44766 -17.69668 -16.98257 -16.77453 -16.59555 -16.47886 -15.75685 -15.47266 -15.20547 -14.88826 -14.43859 -14.28988 -14.08592 -13.79023 -13.58284 -13.19530 -12.97312 -12.82454 -12.41415 -12.32474 -12.13531 -11.69221 -11.59827 -11.50321 -11.31804 -10.98239 -10.73659 -10.59858 -10.05593 -9.25020 -8.27843 -6.45024 -0.37104 0.35964 1.42842 1.45505 1.48396 1.57100 1.70696 1.98387 2.06125 2.42927 2.80282 3.02949 3.45608 3.78616 3.89249 3.95720 4.25261 4.35888 4.49467 4.52686 4.78920 4.81765 4.97304 5.03281 5.12129 5.18234 5.31851 5.40532 5.49000 5.62535 5.78824 5.87822 5.90362 5.94472 6.06165 6.60208 6.91933 6.93859 7.26469 7.49667 8.80306 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038266 B = 0.003270 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.552238 B = 8561.594808 C = 8916.113508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.216 3.784 3 H 0.004 0.996 4 C -0.547 4.547 5 H 0.071 0.929 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.986 3.014 9 H -0.274 1.274 10 H -0.275 1.275 11 H -0.259 1.259 12 O -0.353 6.353 13 C 0.491 3.509 14 O -0.558 6.558 15 C -0.161 4.161 16 C -0.044 4.044 17 C -0.142 4.142 18 C 0.203 3.797 19 N -0.666 5.666 20 C 0.698 3.302 21 N -0.835 5.835 22 O -0.623 6.623 23 C -0.143 4.143 24 C -0.038 4.038 25 H 0.021 0.979 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.271 0.729 29 H 0.126 0.874 30 H 0.139 0.861 31 H 0.432 0.568 32 H 0.419 0.581 33 H 0.426 0.574 34 H 0.179 0.821 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.039 -13.611 -22.912 27.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.163 3.837 3 H 0.022 0.978 4 C -0.584 4.584 5 H 0.089 0.911 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.809 3.191 9 H -0.199 1.199 10 H -0.200 1.200 11 H -0.183 1.183 12 O -0.269 6.269 13 C 0.339 3.661 14 O -0.452 6.452 15 C -0.163 4.163 16 C -0.063 4.063 17 C -0.162 4.162 18 C 0.106 3.894 19 N -0.316 5.316 20 C 0.397 3.603 21 N -0.404 5.404 22 O -0.503 6.503 23 C -0.163 4.163 24 C -0.056 4.056 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.157 0.843 31 H 0.272 0.728 32 H 0.251 0.749 33 H 0.260 0.740 34 H 0.196 0.804 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.150 -12.317 -22.436 26.323 hybrid contribution -0.036 0.020 0.536 0.537 sum 6.114 -12.297 -21.900 25.850 Atomic orbital electron populations 1.21984 0.96615 1.00589 1.00745 1.20389 0.92158 0.92055 0.79079 0.97815 1.21300 1.33417 1.13984 0.89729 0.91082 1.25889 0.94696 0.95706 1.02276 1.70032 1.36606 1.23788 1.25245 0.85131 0.78003 0.79034 0.76925 1.19912 1.20029 1.18308 1.86516 1.76298 1.43010 1.21095 1.21869 0.73933 0.85030 0.85272 1.90732 1.51059 1.17979 1.85410 1.19234 1.10063 0.95957 0.91035 1.21083 0.94335 1.00060 0.90870 1.21035 1.01641 0.94997 0.98577 1.17741 0.93295 0.92050 0.86322 1.42283 1.49298 1.19286 1.20696 1.16200 0.78853 0.83625 0.81648 1.42747 1.54893 1.24783 1.18001 1.91027 1.60711 1.22417 1.76099 1.21107 1.03506 1.02186 0.89484 1.21444 0.92806 0.92195 0.99202 0.96016 0.93168 0.89978 0.91984 0.85567 0.84290 0.72751 0.74900 0.74050 0.80413 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.57 9.33 71.98 0.67 -6.90 16 2 C 0.22 12.41 2.56 29.84 0.08 12.48 16 3 H 0.00 0.26 7.16 -2.39 -0.02 0.24 16 4 C -0.55 -31.68 8.90 25.60 0.23 -31.45 16 5 H 0.07 3.98 7.81 -2.91 -0.02 3.96 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -53.93 11.32 21.45 0.24 -53.68 16 8 Si 0.99 43.33 29.54 68.60 2.03 45.36 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 12 O -0.35 -17.89 9.10 -56.67 -0.52 -18.41 16 13 C 0.49 23.16 7.86 70.25 0.55 23.72 16 14 O -0.56 -29.84 15.60 19.82 0.31 -29.53 16 15 C -0.16 -5.80 5.88 -20.08 -0.12 -5.91 16 16 C -0.04 -1.46 9.58 22.51 0.22 -1.24 16 17 C -0.14 -3.85 8.62 22.35 0.19 -3.66 16 18 C 0.20 4.20 6.27 38.38 0.24 4.44 16 19 N -0.67 -8.28 5.32 -317.17 -1.69 -9.97 16 20 C 0.70 11.28 8.56 179.06 1.53 12.82 16 21 N -0.83 -4.47 8.88 -184.76 -1.64 -6.11 16 22 O -0.62 -17.22 14.86 -3.98 -0.06 -17.28 16 23 C -0.14 -2.73 9.94 22.35 0.22 -2.51 16 24 C -0.04 -1.04 9.60 22.51 0.22 -0.83 16 25 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 2.48 8.14 -2.38 -0.02 2.46 16 27 H 0.08 4.67 6.07 -2.39 -0.01 4.66 16 28 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 29 H 0.13 4.33 7.64 -2.91 -0.02 4.31 16 30 H 0.14 3.84 6.41 -2.91 -0.02 3.82 16 31 H 0.43 1.32 8.83 -92.71 -0.82 0.50 16 32 H 0.42 -1.04 8.85 -92.70 -0.82 -1.86 16 33 H 0.43 1.79 8.93 -92.71 -0.83 0.97 16 34 H 0.18 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.15 4.03 7.60 -2.91 -0.02 4.01 16 Total: -1.00 -81.45 310.31 1.86 -79.60 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -1.30 Total: 7.84 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 4.48 Total: 2.18 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -3.09 Total: -69.76 kcal Atomic # 8 Polarization: -64.95 SS G_CDS: -0.27 Total: -65.22 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -81.45 1.86 -79.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.678 kcal (2) G-P(sol) polarization free energy of solvation -81.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds