Wall clock time and date at job start Tue Mar 31 2020 01:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99799 * 2 1 4 4 O 1.21494 * 119.99992 * 359.97438 * 3 2 1 5 5 C 1.48344 * 120.00360 * 180.02562 * 3 2 1 6 6 C 1.39297 * 119.56955 * 180.02562 * 5 3 2 7 7 C 1.38442 * 119.19866 * 179.97438 * 6 5 3 8 8 C 1.39921 * 118.35203 * 0.02562 * 7 6 5 9 9 C 1.47893 * 120.46809 * 179.97438 * 8 7 6 10 10 O 1.21446 * 120.00216 * 359.97438 * 9 8 7 11 11 O 1.34697 * 119.99756 * 179.97438 * 9 8 7 12 12 C 1.45197 * 116.99516 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.47377 * 30.00654 * 12 11 9 14 14 C 1.52998 * 109.47428 * 269.99865 * 12 11 9 15 15 C 1.50706 * 109.46733 * 150.00222 * 12 11 9 16 16 H 1.07996 * 119.99971 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00011 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00033 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 120.00011 * 179.97438 * 17 15 12 20 20 H 1.48494 * 109.47047 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.46975 * 120.00339 * 19 17 15 22 22 H 1.48502 * 109.46989 * 240.00158 * 19 17 15 23 23 C 1.39772 * 119.06197 * 359.96969 * 8 7 6 24 24 N 1.31412 * 120.71099 * 0.03134 * 23 8 7 25 25 H 1.08998 * 109.47213 * 60.00632 * 1 2 3 26 26 H 1.09003 * 109.46829 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47315 * 299.99937 * 1 2 3 28 28 H 0.96993 * 120.00377 * 179.97438 * 2 1 3 29 29 H 1.08003 * 120.40271 * 359.97438 * 6 5 3 30 30 H 1.07997 * 120.82794 * 180.02562 * 7 6 5 31 31 H 1.09003 * 109.46930 * 180.02562 * 14 12 11 32 32 H 1.09001 * 109.47474 * 300.00253 * 14 12 11 33 33 H 1.08996 * 109.46716 * 60.00606 * 14 12 11 34 34 H 0.97010 * 120.00110 * 179.97438 * 18 17 15 35 35 H 1.08004 * 119.64256 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5313 2.2194 -0.0005 5 6 3.6223 1.1674 -0.0006 6 6 4.3096 2.3790 0.0000 7 6 5.6940 2.3702 0.0000 8 6 6.3506 1.1346 -0.0011 9 6 7.8281 1.0706 -0.0018 10 8 8.4803 2.0950 -0.0018 11 8 8.4504 -0.1240 -0.0023 12 6 9.9023 -0.1108 -0.0035 13 1 10.2580 0.7823 0.5102 14 6 10.4112 -0.1062 -1.4463 15 6 10.4163 -1.3368 0.7065 16 1 9.7213 -2.0538 1.1178 17 6 11.7739 -1.5430 0.8309 18 7 12.6202 -0.6696 0.3305 19 14 12.4110 -3.0623 1.7116 20 1 11.2637 -3.8807 2.1795 21 1 13.2419 -3.8637 0.7776 22 1 13.2338 -2.6502 2.8771 23 6 5.5903 -0.0383 -0.0015 24 7 4.2772 0.0131 -0.0015 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9500 -0.8400 0.0004 29 1 3.7690 3.3140 0.0004 30 1 6.2533 3.2940 0.0008 31 1 11.5012 -0.0967 -1.4471 32 1 10.0556 -0.9994 -1.9600 33 1 10.0395 0.7805 -1.9598 34 1 13.5754 -0.8145 0.4184 35 1 6.0874 -0.9971 -0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:36 Heat of formation + Delta-G solvation = -109.488716 kcal Electronic energy + Delta-G solvation = -20527.820842 eV Core-core repulsion = 17104.195707 eV Total energy + Delta-G solvation = -3423.625134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.06188 -41.11377 -39.93006 -37.67717 -35.81287 -35.35975 -33.88809 -33.03350 -31.57076 -28.54506 -27.45339 -26.21445 -24.80413 -23.74478 -22.14690 -21.55756 -19.71317 -19.17398 -18.70677 -17.92849 -17.47468 -16.95943 -16.62137 -16.51467 -16.31902 -16.08572 -15.41093 -14.95724 -14.88066 -14.37947 -14.24276 -14.02932 -13.83189 -13.75601 -13.22100 -13.08280 -13.01866 -12.81291 -12.39561 -12.14233 -11.79497 -11.64570 -11.59137 -11.24337 -10.99726 -10.83012 -10.61308 -10.55591 -10.17129 -8.28414 -6.44905 -1.03606 -0.03734 1.08136 1.44115 1.44742 1.57738 1.76057 1.77653 1.99212 2.40358 2.64427 2.89167 3.03217 3.52451 3.58465 3.67236 3.84151 3.92249 4.43409 4.50406 4.55191 4.63795 4.71513 4.78614 4.80993 4.87411 4.95258 5.12703 5.22307 5.29820 5.48386 5.61279 5.86752 6.02101 6.19369 6.50170 6.57937 6.82291 7.00125 7.26284 8.79504 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031410 B = 0.003403 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.231858 B = 8227.049137 C = 8868.705285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.704 5.704 3 C 0.569 3.431 4 O -0.558 6.558 5 C 0.095 3.905 6 C -0.116 4.116 7 C -0.013 4.013 8 C -0.156 4.156 9 C 0.499 3.501 10 O -0.539 6.539 11 O -0.349 6.349 12 C 0.219 3.781 13 H 0.011 0.989 14 C -0.144 4.144 15 C -0.546 4.546 16 H 0.072 0.928 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.278 1.278 23 C 0.163 3.837 24 N -0.461 5.461 25 H 0.059 0.941 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.422 0.578 29 H 0.174 0.826 30 H 0.165 0.835 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.024 0.976 34 H 0.271 0.729 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.317 -0.704 -1.082 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.354 5.354 3 C 0.353 3.647 4 O -0.436 6.436 5 C -0.043 4.043 6 C -0.136 4.136 7 C -0.038 4.038 8 C -0.160 4.160 9 C 0.343 3.657 10 O -0.431 6.431 11 O -0.265 6.265 12 C 0.166 3.834 13 H 0.029 0.971 14 C -0.202 4.202 15 C -0.583 4.583 16 H 0.091 0.909 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.806 3.194 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.204 1.204 23 C 0.004 3.996 24 N -0.173 5.173 25 H 0.078 0.922 26 H 0.131 0.869 27 H 0.078 0.922 28 H 0.260 0.740 29 H 0.191 0.809 30 H 0.183 0.817 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -20.899 -0.452 -1.110 20.933 hybrid contribution 1.716 0.156 0.299 1.749 sum -19.182 -0.296 -0.811 19.202 Atomic orbital electron populations 1.21842 0.77331 1.04833 1.02222 1.45703 1.08994 1.08576 1.72155 1.17911 0.85466 0.84553 0.76755 1.90779 1.69100 1.32314 1.51452 1.21566 0.94758 0.90234 0.97722 1.22202 0.93195 1.00304 0.97935 1.21942 0.94168 0.97809 0.89931 1.20455 0.89871 0.97327 1.08317 1.21430 0.89392 0.82381 0.72454 1.90768 1.68293 1.36628 1.47458 1.86505 1.26742 1.31263 1.81986 1.20443 0.70344 0.97566 0.95087 0.97105 1.22012 1.03762 0.98498 0.95951 1.21330 0.92557 1.06968 1.37470 0.90937 1.25815 0.96220 1.00362 0.95956 1.70021 1.03211 1.36945 1.45343 0.85132 0.78369 0.77977 0.77927 1.18464 1.19838 1.20398 1.23362 0.88230 0.98670 0.89387 1.67675 1.09616 1.27923 1.12053 0.92195 0.86890 0.92238 0.74041 0.80854 0.81700 0.90004 0.93215 0.95676 0.92009 0.79231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.70 127.77 1.37 2.25 16 2 N -0.70 -11.25 5.70 -486.98 -2.78 -14.03 16 3 C 0.57 12.74 7.82 86.93 0.68 13.42 16 4 O -0.56 -15.31 16.31 -3.70 -0.06 -15.37 16 5 C 0.10 2.19 6.75 41.96 0.28 2.48 16 6 C -0.12 -2.55 9.62 22.57 0.22 -2.34 16 7 C -0.01 -0.32 9.71 22.73 0.22 -0.10 16 8 C -0.16 -4.72 5.89 -19.94 -0.12 -4.83 16 9 C 0.50 20.19 7.89 70.38 0.55 20.75 16 10 O -0.54 -24.91 15.67 20.01 0.31 -24.59 16 11 O -0.35 -15.78 9.14 -56.06 -0.51 -16.29 16 12 C 0.22 11.55 2.56 29.85 0.08 11.62 16 13 H 0.01 0.66 7.16 -2.39 -0.02 0.64 16 14 C -0.14 -7.18 9.33 71.98 0.67 -6.51 16 15 C -0.55 -29.76 8.90 25.60 0.23 -29.53 16 16 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 17 C 0.02 0.87 5.30 84.65 0.45 1.32 16 18 N -0.92 -51.43 11.32 21.45 0.24 -51.19 16 19 Si 0.98 41.60 29.54 68.60 2.03 43.63 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 23 C 0.16 4.26 10.78 85.13 0.92 5.18 16 24 N -0.46 -10.76 9.52 -183.87 -1.75 -12.51 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.42 5.55 8.15 -92.71 -0.76 4.80 16 29 H 0.17 3.22 7.63 -2.91 -0.02 3.20 16 30 H 0.17 3.85 7.73 -2.91 -0.02 3.82 16 31 H 0.08 4.40 6.07 -2.39 -0.01 4.38 16 32 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 35 H 0.19 4.66 7.62 -2.91 -0.02 4.63 16 Total: -1.00 -67.30 314.95 3.41 -63.89 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.38 Total: 12.77 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 5.55 Total: 13.70 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -4.28 Total: -77.74 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: -0.26 Total: -56.26 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -67.30 3.41 -63.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.599 kcal (2) G-P(sol) polarization free energy of solvation -67.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds