Wall clock time and date at job start Tue Mar 31 2020 01:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 119.99937 * 2 1 4 4 O 1.21491 * 119.99801 * 359.97438 * 3 2 1 5 5 C 1.48345 * 120.00158 * 180.02562 * 3 2 1 6 6 C 1.39302 * 119.56465 * 180.27171 * 5 3 2 7 7 C 1.38448 * 119.19318 * 180.30037 * 6 5 3 8 8 C 1.39921 * 118.35235 * 359.43297 * 7 6 5 9 9 C 1.47896 * 120.46875 * 180.29835 * 8 7 6 10 10 O 1.21441 * 119.99930 * 0.02562 * 9 8 7 11 11 O 1.34689 * 119.99739 * 180.02562 * 9 8 7 12 12 C 1.45207 * 116.99817 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47053 * 330.00292 * 12 11 9 14 14 C 1.52999 * 109.46656 * 90.00383 * 12 11 9 15 15 C 1.50697 * 109.46928 * 210.00066 * 12 11 9 16 16 H 1.07993 * 120.00614 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99605 * 179.97438 * 15 12 11 18 18 N 1.31506 * 120.00201 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 119.99933 * 180.02562 * 17 15 12 20 20 H 1.48509 * 109.46760 * 89.99973 * 19 17 15 21 21 H 1.48494 * 109.46992 * 210.00034 * 19 17 15 22 22 H 1.48502 * 109.47029 * 330.00603 * 19 17 15 23 23 C 1.39769 * 119.06073 * 0.28362 * 8 7 6 24 24 N 1.31411 * 120.71790 * 0.02562 * 23 8 7 25 25 H 1.09003 * 109.47339 * 300.00529 * 1 2 3 26 26 H 1.08997 * 109.47726 * 60.00479 * 1 2 3 27 27 H 1.09002 * 109.47362 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00132 * 179.97438 * 2 1 3 29 29 H 1.08001 * 120.40671 * 0.03275 * 6 5 3 30 30 H 1.08002 * 120.82779 * 179.71526 * 7 6 5 31 31 H 1.09005 * 109.46597 * 179.97438 * 14 12 11 32 32 H 1.09003 * 109.47278 * 299.99607 * 14 12 11 33 33 H 1.09001 * 109.47464 * 60.00160 * 14 12 11 34 34 H 0.97004 * 120.00133 * 179.97438 * 18 17 15 35 35 H 1.08008 * 119.64336 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5313 2.2193 -0.0005 5 6 3.6223 1.1673 -0.0006 6 6 4.3096 2.3789 0.0052 7 6 5.6940 2.3700 -0.0017 8 6 6.3506 1.1344 -0.0021 9 6 7.8281 1.0703 -0.0028 10 8 8.4803 2.0948 -0.0024 11 8 8.4504 -0.1242 -0.0036 12 6 9.9024 -0.1112 -0.0048 13 1 10.2573 0.7823 -0.5186 14 6 10.4134 -0.1072 1.4373 15 6 10.4151 -1.3368 -0.7160 16 1 9.7195 -2.0536 -1.1265 17 6 11.7725 -1.5424 -0.8436 18 7 12.6197 -0.6693 -0.3442 19 14 12.4083 -3.0613 -1.7259 20 1 12.5689 -2.7629 -3.1718 21 1 13.7206 -3.4538 -1.1525 22 1 11.4404 -4.1746 -1.5548 23 6 5.5903 -0.0384 -0.0016 24 7 4.2772 0.0129 -0.0013 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.9500 -0.8400 0.0004 29 1 3.7691 3.3139 0.0106 30 1 6.2534 3.2939 -0.0021 31 1 11.5034 -0.0978 1.4365 32 1 10.0425 0.7794 1.9518 33 1 10.0585 -1.0006 1.9511 34 1 13.5747 -0.8142 -0.4336 35 1 6.0874 -0.9973 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733710771.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:39 Heat of formation + Delta-G solvation = -88.650552 kcal Electronic energy + Delta-G solvation = -20526.738154 eV Core-core repulsion = 17104.016630 eV Total energy + Delta-G solvation = -3422.721524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91935 -39.69713 -38.77077 -35.90764 -34.97217 -33.38881 -32.77095 -31.88561 -29.64605 -27.68245 -25.43388 -25.09053 -23.73392 -22.16870 -20.96948 -20.01822 -18.71109 -17.61704 -17.19457 -16.44905 -15.88784 -15.70755 -15.44970 -15.19469 -15.13830 -14.64368 -14.27421 -13.94159 -13.38127 -13.21352 -13.01203 -12.69269 -12.59090 -12.32568 -12.01405 -11.33089 -11.13635 -10.94123 -10.63560 -10.45140 -10.37303 -10.17947 -10.15702 -9.71919 -9.63344 -9.54217 -9.31051 -9.00721 -8.56472 -6.25275 -4.32832 0.10004 1.00151 2.26239 2.81711 3.07253 3.20516 3.23570 3.28393 3.37361 3.76929 3.88260 4.27065 4.55053 4.67416 4.72493 4.90186 4.97697 5.08183 5.17885 5.30124 5.44861 5.52922 5.78926 5.97589 6.05154 6.28617 6.53241 6.79984 6.80710 7.00128 7.08137 7.46472 7.49916 7.62678 7.81032 7.86871 8.03682 8.43474 8.76525 9.32891 10.82162 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031399 B = 0.003403 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.523864 B = 8226.362231 C = 8868.471919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.716 5.716 3 C 0.573 3.427 4 O -0.531 6.531 5 C 0.092 3.908 6 C -0.122 4.122 7 C -0.024 4.024 8 C -0.137 4.137 9 C 0.498 3.502 10 O -0.507 6.507 11 O -0.348 6.348 12 C 0.217 3.783 13 H 0.049 0.951 14 C -0.156 4.156 15 C -0.523 4.523 16 H 0.070 0.930 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.913 3.087 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.156 3.844 24 N -0.468 5.468 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.415 0.585 29 H 0.155 0.845 30 H 0.157 0.843 31 H 0.101 0.899 32 H 0.017 0.983 33 H 0.038 0.962 34 H 0.267 0.733 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.582 0.605 1.356 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.367 5.367 3 C 0.357 3.643 4 O -0.407 6.407 5 C -0.046 4.046 6 C -0.143 4.143 7 C -0.049 4.049 8 C -0.141 4.141 9 C 0.341 3.659 10 O -0.398 6.398 11 O -0.264 6.264 12 C 0.165 3.835 13 H 0.067 0.933 14 C -0.214 4.214 15 C -0.561 4.561 16 H 0.089 0.911 17 C -0.139 4.139 18 N -0.526 5.526 19 Si 0.740 3.260 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.004 4.004 24 N -0.180 5.180 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.251 0.749 29 H 0.173 0.827 30 H 0.175 0.825 31 H 0.119 0.881 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -19.123 0.884 1.380 19.193 hybrid contribution 1.320 -0.302 -0.394 1.410 sum -17.803 0.582 0.986 17.839 Atomic orbital electron populations 1.21613 0.79053 1.02616 1.02500 1.45638 1.07820 1.09185 1.74094 1.17935 0.85756 0.84066 0.76499 1.90784 1.68839 1.31321 1.49782 1.21273 0.94157 0.90084 0.99104 1.22046 0.93924 0.99564 0.98774 1.21835 0.93663 0.98324 0.91113 1.20719 0.92911 0.95582 1.04865 1.20723 0.87679 0.83623 0.73896 1.90787 1.67142 1.35997 1.45869 1.86529 1.28604 1.29842 1.81383 1.20743 0.68410 0.99415 0.94962 0.93345 1.22183 1.05107 0.97704 0.96382 1.21002 0.91879 1.06562 1.36684 0.91135 1.24889 0.96188 0.97344 0.95507 1.69889 1.02824 1.35328 1.44548 0.86252 0.78216 0.82030 0.79522 1.20368 1.20925 1.19513 1.23301 0.87970 0.98996 0.90150 1.67613 1.10439 1.27941 1.11982 0.91968 0.91954 0.90272 0.74903 0.82699 0.82506 0.88074 0.96436 0.94241 0.92289 0.79896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.85 0.64 1.22 16 2 N -0.72 -6.60 5.70 -67.88 -0.39 -6.99 16 3 C 0.57 6.99 7.82 -12.10 -0.09 6.90 16 4 O -0.53 -7.73 16.31 5.37 0.09 -7.64 16 5 C 0.09 1.15 6.75 -82.93 -0.56 0.59 16 6 C -0.12 -1.46 9.62 -39.11 -0.38 -1.84 16 7 C -0.02 -0.31 9.71 -38.87 -0.38 -0.69 16 8 C -0.14 -2.11 5.89 -104.74 -0.62 -2.73 16 9 C 0.50 9.93 7.88 34.68 0.27 10.20 16 10 O -0.51 -11.39 15.67 -19.22 -0.30 -11.69 16 11 O -0.35 -7.73 9.14 -40.46 -0.37 -8.10 16 12 C 0.22 5.58 2.56 -27.88 -0.07 5.51 16 13 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 14 C -0.16 -3.81 9.33 37.16 0.35 -3.46 16 15 C -0.52 -14.12 8.90 -34.44 -0.31 -14.43 16 16 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -24.58 11.32 55.43 0.63 -23.95 16 19 Si 0.91 20.47 29.54 -169.99 -5.02 15.45 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 C 0.16 2.13 10.78 -17.16 -0.18 1.94 16 24 N -0.47 -5.92 9.52 -9.46 -0.09 -6.01 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.42 3.29 8.15 -40.82 -0.33 2.96 16 29 H 0.16 1.61 7.63 -52.49 -0.40 1.21 16 30 H 0.16 1.89 7.73 -52.49 -0.41 1.49 16 31 H 0.10 2.65 6.07 -51.93 -0.32 2.34 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.18 2.35 7.62 -52.48 -0.40 1.95 16 LS Contribution 314.95 15.07 4.75 4.75 Total: -1.00 -31.16 314.95 -6.01 -37.17 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.88 Total: 2.20 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -1.42 Total: 4.81 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.15 Total: -36.95 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.58 Total: -27.43 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.16 -6.01 -37.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710771.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.480 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds