Wall clock time and date at job start Tue Mar 31 2020 01:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 119.99937 * 2 1 4 4 O 1.21491 * 119.99801 * 359.97438 * 3 2 1 5 5 C 1.48345 * 120.00158 * 180.02562 * 3 2 1 6 6 C 1.39302 * 119.56465 * 180.27171 * 5 3 2 7 7 C 1.38448 * 119.19318 * 180.30037 * 6 5 3 8 8 C 1.39921 * 118.35235 * 359.43297 * 7 6 5 9 9 C 1.47896 * 120.46875 * 180.29835 * 8 7 6 10 10 O 1.21441 * 119.99930 * 0.02562 * 9 8 7 11 11 O 1.34689 * 119.99739 * 180.02562 * 9 8 7 12 12 C 1.45207 * 116.99817 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47053 * 330.00292 * 12 11 9 14 14 C 1.52999 * 109.46656 * 90.00383 * 12 11 9 15 15 C 1.50697 * 109.46928 * 210.00066 * 12 11 9 16 16 H 1.07993 * 120.00614 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99605 * 179.97438 * 15 12 11 18 18 N 1.31506 * 120.00201 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 119.99933 * 180.02562 * 17 15 12 20 20 H 1.48509 * 109.46760 * 89.99973 * 19 17 15 21 21 H 1.48494 * 109.46992 * 210.00034 * 19 17 15 22 22 H 1.48502 * 109.47029 * 330.00603 * 19 17 15 23 23 C 1.39769 * 119.06073 * 0.28362 * 8 7 6 24 24 N 1.31411 * 120.71790 * 0.02562 * 23 8 7 25 25 H 1.09003 * 109.47339 * 300.00529 * 1 2 3 26 26 H 1.08997 * 109.47726 * 60.00479 * 1 2 3 27 27 H 1.09002 * 109.47362 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00132 * 179.97438 * 2 1 3 29 29 H 1.08001 * 120.40671 * 0.03275 * 6 5 3 30 30 H 1.08002 * 120.82779 * 179.71526 * 7 6 5 31 31 H 1.09005 * 109.46597 * 179.97438 * 14 12 11 32 32 H 1.09003 * 109.47278 * 299.99607 * 14 12 11 33 33 H 1.09001 * 109.47464 * 60.00160 * 14 12 11 34 34 H 0.97004 * 120.00133 * 179.97438 * 18 17 15 35 35 H 1.08008 * 119.64336 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5313 2.2193 -0.0005 5 6 3.6223 1.1673 -0.0006 6 6 4.3096 2.3789 0.0052 7 6 5.6940 2.3700 -0.0017 8 6 6.3506 1.1344 -0.0021 9 6 7.8281 1.0703 -0.0028 10 8 8.4803 2.0948 -0.0024 11 8 8.4504 -0.1242 -0.0036 12 6 9.9024 -0.1112 -0.0048 13 1 10.2573 0.7823 -0.5186 14 6 10.4134 -0.1072 1.4373 15 6 10.4151 -1.3368 -0.7160 16 1 9.7195 -2.0536 -1.1265 17 6 11.7725 -1.5424 -0.8436 18 7 12.6197 -0.6693 -0.3442 19 14 12.4083 -3.0613 -1.7259 20 1 12.5689 -2.7629 -3.1718 21 1 13.7206 -3.4538 -1.1525 22 1 11.4404 -4.1746 -1.5548 23 6 5.5903 -0.0384 -0.0016 24 7 4.2772 0.0129 -0.0013 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.9500 -0.8400 0.0004 29 1 3.7691 3.3139 0.0106 30 1 6.2534 3.2939 -0.0021 31 1 11.5034 -0.0978 1.4365 32 1 10.0425 0.7794 1.9518 33 1 10.0585 -1.0006 1.9511 34 1 13.5747 -0.8142 -0.4336 35 1 6.0874 -0.9973 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710771.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:39 Heat of formation + Delta-G solvation = -109.461797 kcal Electronic energy + Delta-G solvation = -20527.640597 eV Core-core repulsion = 17104.016630 eV Total energy + Delta-G solvation = -3423.623967 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.06179 -41.11424 -39.93031 -37.67716 -35.81281 -35.35951 -33.88789 -33.03313 -31.57101 -28.54499 -27.45166 -26.21402 -24.80383 -23.74417 -22.14641 -21.55734 -19.71305 -19.17359 -18.70558 -17.92698 -17.47323 -16.95932 -16.62212 -16.51505 -16.31956 -16.08559 -15.41168 -14.95670 -14.87953 -14.37911 -14.24246 -14.02465 -13.83284 -13.75497 -13.21963 -13.08281 -13.00484 -12.82816 -12.38142 -12.15454 -11.79401 -11.64800 -11.59150 -11.24323 -11.00444 -10.83030 -10.60907 -10.55544 -10.17124 -8.28220 -6.44855 -1.03591 -0.03749 1.08163 1.44067 1.45991 1.56924 1.75890 1.77624 1.99214 2.40479 2.64421 2.89186 3.03374 3.52450 3.58476 3.67227 3.84134 3.92232 4.43410 4.50413 4.55186 4.63776 4.71519 4.78605 4.81008 4.87417 4.95275 5.12738 5.22301 5.29829 5.48224 5.61289 5.86706 6.02192 6.19366 6.50161 6.57820 6.82228 7.00131 7.26290 8.79499 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031399 B = 0.003403 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.523864 B = 8226.362231 C = 8868.471919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.704 5.704 3 C 0.569 3.431 4 O -0.558 6.558 5 C 0.095 3.905 6 C -0.116 4.116 7 C -0.013 4.013 8 C -0.156 4.156 9 C 0.499 3.501 10 O -0.539 6.539 11 O -0.349 6.349 12 C 0.219 3.781 13 H 0.011 0.989 14 C -0.144 4.144 15 C -0.547 4.547 16 H 0.073 0.927 17 C 0.017 3.983 18 N -0.917 5.917 19 Si 0.982 3.018 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.260 1.260 23 C 0.163 3.837 24 N -0.461 5.461 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.422 0.578 29 H 0.174 0.826 30 H 0.165 0.835 31 H 0.081 0.919 32 H 0.024 0.976 33 H 0.049 0.951 34 H 0.271 0.729 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.309 -0.713 1.119 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.354 5.354 3 C 0.353 3.647 4 O -0.436 6.436 5 C -0.043 4.043 6 C -0.136 4.136 7 C -0.039 4.039 8 C -0.160 4.160 9 C 0.343 3.657 10 O -0.431 6.431 11 O -0.265 6.265 12 C 0.166 3.834 13 H 0.029 0.971 14 C -0.202 4.202 15 C -0.584 4.584 16 H 0.091 0.909 17 C -0.183 4.183 18 N -0.555 5.555 19 Si 0.806 3.194 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.184 1.184 23 C 0.003 3.997 24 N -0.173 5.173 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.131 0.869 28 H 0.260 0.740 29 H 0.191 0.809 30 H 0.183 0.817 31 H 0.100 0.900 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -20.887 -0.462 1.149 20.924 hybrid contribution 1.707 0.159 -0.312 1.742 sum -19.180 -0.303 0.837 19.201 Atomic orbital electron populations 1.21841 0.77332 1.04833 1.02222 1.45703 1.08993 1.08577 1.72153 1.17909 0.85466 0.84553 0.76757 1.90778 1.69098 1.32317 1.51452 1.21569 0.94759 0.90236 0.97722 1.22204 0.93193 1.00302 0.97935 1.21944 0.94170 0.97809 0.89930 1.20455 0.89872 0.97326 1.08317 1.21427 0.89392 0.82381 0.72457 1.90766 1.68295 1.36630 1.47457 1.86505 1.26750 1.31264 1.81983 1.20438 0.70332 0.97543 0.95085 0.97125 1.22012 1.03757 0.98499 0.95950 1.21302 0.92573 1.07048 1.37523 0.90920 1.25815 0.96202 1.00365 0.95944 1.70011 1.03207 1.37033 1.45262 0.85185 0.77769 0.78301 0.78190 1.19917 1.20298 1.18401 1.23362 0.88232 0.98672 0.89388 1.67679 1.09613 1.27915 1.12054 0.92203 0.92234 0.86889 0.74040 0.80853 0.81701 0.90008 0.95674 0.93212 0.92000 0.79229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.70 127.77 1.37 2.25 16 2 N -0.70 -11.25 5.70 -486.99 -2.78 -14.03 16 3 C 0.57 12.74 7.82 86.93 0.68 13.42 16 4 O -0.56 -15.31 16.31 -3.69 -0.06 -15.37 16 5 C 0.10 2.19 6.75 41.96 0.28 2.48 16 6 C -0.12 -2.55 9.62 22.58 0.22 -2.34 16 7 C -0.01 -0.32 9.71 22.73 0.22 -0.10 16 8 C -0.16 -4.72 5.89 -19.94 -0.12 -4.84 16 9 C 0.50 20.20 7.88 70.38 0.55 20.75 16 10 O -0.54 -24.92 15.67 20.03 0.31 -24.60 16 11 O -0.35 -15.78 9.14 -55.99 -0.51 -16.30 16 12 C 0.22 11.57 2.56 29.85 0.08 11.65 16 13 H 0.01 0.65 7.16 -2.39 -0.02 0.63 16 14 C -0.14 -7.18 9.33 71.98 0.67 -6.51 16 15 C -0.55 -29.83 8.90 25.60 0.23 -29.60 16 16 H 0.07 3.83 7.81 -2.91 -0.02 3.80 16 17 C 0.02 0.88 5.30 84.66 0.45 1.33 16 18 N -0.92 -51.47 11.32 21.45 0.24 -51.23 16 19 Si 0.98 41.57 29.54 68.60 2.03 43.60 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 23 C 0.16 4.26 10.78 85.13 0.92 5.18 16 24 N -0.46 -10.76 9.52 -183.86 -1.75 -12.51 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.42 5.55 8.15 -92.71 -0.76 4.80 16 29 H 0.17 3.22 7.63 -2.91 -0.02 3.20 16 30 H 0.17 3.85 7.73 -2.91 -0.02 3.82 16 31 H 0.08 4.39 6.07 -2.38 -0.01 4.38 16 32 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.19 4.65 7.62 -2.91 -0.02 4.63 16 Total: -1.00 -67.28 314.95 3.41 -63.87 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.38 Total: 12.88 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 5.55 Total: 13.67 kcal Atomic # 7 Polarization: -73.48 SS G_CDS: -4.28 Total: -77.77 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -0.26 Total: -56.27 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -67.28 3.41 -63.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710771.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.587 kcal (2) G-P(sol) polarization free energy of solvation -67.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds