Wall clock time and date at job start Tue Mar 31 2020 01:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47312 * 2 1 4 4 C 1.50700 * 109.47298 * 239.99582 * 2 1 3 5 5 H 1.08001 * 120.00155 * 245.18790 * 4 2 1 6 6 C 1.37879 * 119.99913 * 65.18454 * 4 2 1 7 7 N 1.31511 * 120.00019 * 5.07824 * 6 4 2 8 8 Si 1.86803 * 120.00021 * 185.07963 * 6 4 2 9 9 H 1.48494 * 109.47045 * 94.99805 * 8 6 4 10 10 H 1.48495 * 109.47054 * 214.99973 * 8 6 4 11 11 H 1.48499 * 109.46806 * 334.99686 * 8 6 4 12 12 N 1.46501 * 109.47242 * 119.99644 * 2 1 3 13 13 C 1.34773 * 120.00067 * 275.00662 * 12 2 1 14 14 O 1.21597 * 120.00217 * 359.97438 * 13 12 2 15 15 C 1.47511 * 120.00293 * 179.97438 * 13 12 2 16 16 C 1.39699 * 120.19614 * 5.35545 * 15 13 12 17 17 C 1.37793 * 119.91625 * 180.02562 * 16 15 13 18 18 C 1.38562 * 120.33452 * 0.02562 * 17 16 15 19 19 C 1.38023 * 120.40735 * 359.97273 * 18 17 16 20 20 C 1.38850 * 120.06724 * 359.72554 * 19 18 17 21 21 N 1.39283 * 120.16633 * 180.27131 * 20 19 18 22 22 C 1.34774 * 119.99896 * 25.27863 * 21 20 19 23 23 O 1.21503 * 120.00287 * 5.71943 * 22 21 20 24 24 O 1.34635 * 120.00405 * 185.72650 * 22 21 20 25 25 H 1.08997 * 109.46963 * 54.99393 * 1 2 3 26 26 H 1.09006 * 109.46748 * 174.98780 * 1 2 3 27 27 H 1.08996 * 109.47531 * 294.98840 * 1 2 3 28 28 H 0.96993 * 120.00017 * 180.02562 * 7 6 4 29 29 H 0.96999 * 120.00181 * 94.99632 * 12 2 1 30 30 H 1.07997 * 120.04001 * 0.02562 * 16 15 13 31 31 H 1.07996 * 119.83045 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.79975 * 179.97438 * 18 17 16 33 33 H 1.08000 * 119.96498 * 180.02562 * 19 18 17 34 34 H 0.97000 * 120.00347 * 205.27182 * 21 20 19 35 35 H 0.96699 * 117.00557 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5824 -1.6349 -1.1335 6 6 1.7897 -0.1805 -2.4799 7 7 1.2083 0.9936 -2.5946 8 14 2.2868 -1.1300 -4.0099 9 1 1.1260 -1.9122 -4.5059 10 1 2.7283 -0.1787 -5.0612 11 1 3.4012 -2.0539 -3.6787 12 7 2.0184 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8581 1.1617 2.4116 15 6 2.6382 -0.7136 3.5618 16 6 3.0767 -2.0374 3.4792 17 6 3.5339 -2.6816 4.6082 18 6 3.5608 -2.0231 5.8271 19 6 3.1308 -0.7152 5.9242 20 6 2.6726 -0.0479 4.7960 21 7 2.2436 1.2738 4.8905 22 6 2.7131 2.0659 5.8747 23 8 3.5868 1.6612 6.6157 24 8 2.2139 3.3057 6.0369 25 1 -0.3633 0.5895 -0.8417 26 1 -0.3633 -1.0238 -0.0898 27 1 -0.3634 0.4341 0.9314 28 1 1.0372 1.3662 -3.4736 29 1 2.2490 -1.6317 1.1527 30 1 3.0573 -2.5552 2.5316 31 1 3.8721 -3.7051 4.5428 32 1 3.9204 -2.5365 6.7066 33 1 3.1553 -0.2087 6.8777 34 1 1.6069 1.6242 4.2481 35 1 2.5819 3.8365 6.7566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736540776.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:37 Heat of formation + Delta-G solvation = -91.037432 kcal Electronic energy + Delta-G solvation = -21270.492228 eV Core-core repulsion = 17847.667202 eV Total energy + Delta-G solvation = -3422.825026 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03151 -39.56564 -38.01064 -36.29459 -35.28674 -34.51114 -32.57536 -31.19974 -29.69197 -28.72826 -25.29608 -23.97897 -23.67246 -21.61712 -20.97391 -19.79346 -18.84139 -18.00890 -17.48427 -16.67957 -16.12630 -16.02309 -15.49157 -14.86839 -14.52604 -14.38268 -14.15822 -13.88879 -13.47398 -13.06501 -12.77877 -12.46200 -12.05034 -11.83808 -11.73162 -11.60751 -11.11756 -11.05489 -10.83986 -10.73758 -10.42264 -10.37922 -10.30746 -9.22371 -9.13820 -8.95227 -8.60626 -8.20479 -7.96548 -6.18663 -4.25965 0.92785 1.30941 2.29913 2.72144 3.21935 3.28296 3.29784 3.31394 3.92766 4.05969 4.33236 4.52073 4.84401 4.94607 5.09242 5.16001 5.40129 5.42776 5.58034 5.87002 6.16726 6.23437 6.30057 6.44922 6.58096 6.72345 6.81515 6.92999 7.01978 7.26498 7.43548 7.47399 7.62432 7.77838 8.00340 8.26798 8.52690 8.70596 8.96058 9.40713 10.89697 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.004490 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.043626 B = 6234.437709 C = 7123.128836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.261 3.739 3 H 0.057 0.943 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.694 5.694 13 C 0.549 3.451 14 O -0.559 6.559 15 C -0.159 4.159 16 C -0.064 4.064 17 C -0.148 4.148 18 C -0.079 4.079 19 C -0.147 4.147 20 C 0.218 3.782 21 N -0.630 5.630 22 C 0.666 3.334 23 O -0.570 6.570 24 O -0.517 6.517 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.018 0.982 28 H 0.265 0.735 29 H 0.390 0.610 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.150 0.850 34 H 0.434 0.566 35 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.993 -4.245 15.548 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.160 3.840 3 H 0.075 0.925 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.341 5.341 13 C 0.335 3.665 14 O -0.441 6.441 15 C -0.165 4.165 16 C -0.083 4.083 17 C -0.167 4.167 18 C -0.098 4.098 19 C -0.167 4.167 20 C 0.120 3.880 21 N -0.288 5.288 22 C 0.419 3.581 23 O -0.460 6.460 24 O -0.327 6.327 25 H 0.095 0.905 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.224 0.776 30 H 0.152 0.848 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.167 0.833 34 H 0.282 0.718 35 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 1.872 -3.522 15.399 15.907 hybrid contribution 0.330 -0.406 -0.817 0.970 sum 2.202 -3.928 14.582 15.261 Atomic orbital electron populations 1.22018 0.98463 0.99705 0.99780 1.18844 0.90844 0.94520 0.79804 0.92549 1.21170 1.36994 1.09009 0.90365 0.91995 1.24886 0.94849 0.94715 0.99084 1.69951 1.41765 1.15961 1.24206 0.86445 0.78756 0.79639 0.82347 1.20534 1.21074 1.19779 1.46461 1.63711 1.13614 1.10272 1.18066 0.78588 0.86498 0.83334 1.90508 1.53276 1.15807 1.84540 1.19978 1.07859 0.96110 0.92522 1.21211 0.95387 0.92509 0.99214 1.21054 1.02490 1.00509 0.92608 1.21163 0.97027 0.93735 0.97857 1.21399 1.02087 0.94853 0.98407 1.17455 0.95704 0.82063 0.92747 1.42418 1.46741 1.09270 1.30395 1.17745 0.79474 0.80116 0.80764 1.90996 1.32792 1.74798 1.47402 1.84227 1.65139 1.25935 1.57373 0.90511 0.95000 0.96314 0.92518 0.77599 0.84805 0.85398 0.85414 0.83271 0.71839 0.71073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.26 37.16 0.34 -3.00 16 2 C 0.26 6.45 2.43 -69.08 -0.17 6.28 16 3 H 0.06 1.62 7.56 -51.93 -0.39 1.23 16 4 C -0.54 -13.88 8.67 -34.44 -0.30 -14.18 16 5 H 0.06 1.52 7.72 -52.49 -0.41 1.12 16 6 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 7 N -0.88 -24.58 11.97 55.43 0.66 -23.92 16 8 Si 0.90 20.30 29.54 -169.99 -5.02 15.27 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 N -0.69 -14.04 5.02 -55.98 -0.28 -14.32 16 13 C 0.55 10.83 7.71 -12.48 -0.10 10.74 16 14 O -0.56 -12.51 13.47 5.28 0.07 -12.43 16 15 C -0.16 -2.57 5.89 -104.81 -0.62 -3.18 16 16 C -0.06 -0.83 9.52 -39.20 -0.37 -1.21 16 17 C -0.15 -1.62 10.02 -39.62 -0.40 -2.01 16 18 C -0.08 -0.88 10.03 -39.54 -0.40 -1.28 16 19 C -0.15 -2.02 8.70 -39.43 -0.34 -2.36 16 20 C 0.22 3.44 6.43 -83.48 -0.54 2.90 16 21 N -0.63 -10.04 4.87 -14.10 -0.07 -10.10 16 22 C 0.67 9.74 8.92 54.05 0.48 10.22 16 23 O -0.57 -9.12 14.32 -19.27 -0.28 -9.39 16 24 O -0.52 -5.83 13.48 -40.31 -0.54 -6.37 16 25 H 0.08 1.98 6.82 -51.93 -0.35 1.62 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.39 6.76 6.59 -40.82 -0.27 6.49 16 30 H 0.13 1.52 6.44 -52.49 -0.34 1.18 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.15 2.07 5.82 -52.49 -0.31 1.76 16 34 H 0.43 7.37 6.10 -40.82 -0.25 7.12 16 35 H 0.43 2.45 9.11 45.56 0.42 2.87 16 LS Contribution 303.71 15.07 4.58 4.58 Total: -1.00 -31.91 303.71 -6.10 -38.01 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -2.72 Total: 14.06 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -2.50 Total: 4.62 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.31 Total: -48.35 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.75 Total: -28.20 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.91 -6.10 -38.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736540776.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.025 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds