Wall clock time and date at job start Tue Mar 31 2020 01:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47312 * 2 1 4 4 C 1.50700 * 109.47298 * 239.99582 * 2 1 3 5 5 H 1.08001 * 120.00155 * 245.18790 * 4 2 1 6 6 C 1.37879 * 119.99913 * 65.18454 * 4 2 1 7 7 N 1.31511 * 120.00019 * 5.07824 * 6 4 2 8 8 Si 1.86803 * 120.00021 * 185.07963 * 6 4 2 9 9 H 1.48494 * 109.47045 * 94.99805 * 8 6 4 10 10 H 1.48495 * 109.47054 * 214.99973 * 8 6 4 11 11 H 1.48499 * 109.46806 * 334.99686 * 8 6 4 12 12 N 1.46501 * 109.47242 * 119.99644 * 2 1 3 13 13 C 1.34773 * 120.00067 * 275.00662 * 12 2 1 14 14 O 1.21597 * 120.00217 * 359.97438 * 13 12 2 15 15 C 1.47511 * 120.00293 * 179.97438 * 13 12 2 16 16 C 1.39699 * 120.19614 * 5.35545 * 15 13 12 17 17 C 1.37793 * 119.91625 * 180.02562 * 16 15 13 18 18 C 1.38562 * 120.33452 * 0.02562 * 17 16 15 19 19 C 1.38023 * 120.40735 * 359.97273 * 18 17 16 20 20 C 1.38850 * 120.06724 * 359.72554 * 19 18 17 21 21 N 1.39283 * 120.16633 * 180.27131 * 20 19 18 22 22 C 1.34774 * 119.99896 * 25.27863 * 21 20 19 23 23 O 1.21503 * 120.00287 * 5.71943 * 22 21 20 24 24 O 1.34635 * 120.00405 * 185.72650 * 22 21 20 25 25 H 1.08997 * 109.46963 * 54.99393 * 1 2 3 26 26 H 1.09006 * 109.46748 * 174.98780 * 1 2 3 27 27 H 1.08996 * 109.47531 * 294.98840 * 1 2 3 28 28 H 0.96993 * 120.00017 * 180.02562 * 7 6 4 29 29 H 0.96999 * 120.00181 * 94.99632 * 12 2 1 30 30 H 1.07997 * 120.04001 * 0.02562 * 16 15 13 31 31 H 1.07996 * 119.83045 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.79975 * 179.97438 * 18 17 16 33 33 H 1.08000 * 119.96498 * 180.02562 * 19 18 17 34 34 H 0.97000 * 120.00347 * 205.27182 * 21 20 19 35 35 H 0.96699 * 117.00557 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5824 -1.6349 -1.1335 6 6 1.7897 -0.1805 -2.4799 7 7 1.2083 0.9936 -2.5946 8 14 2.2868 -1.1300 -4.0099 9 1 1.1260 -1.9122 -4.5059 10 1 2.7283 -0.1787 -5.0612 11 1 3.4012 -2.0539 -3.6787 12 7 2.0184 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8581 1.1617 2.4116 15 6 2.6382 -0.7136 3.5618 16 6 3.0767 -2.0374 3.4792 17 6 3.5339 -2.6816 4.6082 18 6 3.5608 -2.0231 5.8271 19 6 3.1308 -0.7152 5.9242 20 6 2.6726 -0.0479 4.7960 21 7 2.2436 1.2738 4.8905 22 6 2.7131 2.0659 5.8747 23 8 3.5868 1.6612 6.6157 24 8 2.2139 3.3057 6.0369 25 1 -0.3633 0.5895 -0.8417 26 1 -0.3633 -1.0238 -0.0898 27 1 -0.3634 0.4341 0.9314 28 1 1.0372 1.3662 -3.4736 29 1 2.2490 -1.6317 1.1527 30 1 3.0573 -2.5552 2.5316 31 1 3.8721 -3.7051 4.5428 32 1 3.9204 -2.5365 6.7066 33 1 3.1553 -0.2087 6.8777 34 1 1.6069 1.6242 4.2481 35 1 2.5819 3.8365 6.7566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736540776.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:36 Heat of formation + Delta-G solvation = -115.379937 kcal Electronic energy + Delta-G solvation = -21271.547798 eV Core-core repulsion = 17847.667202 eV Total energy + Delta-G solvation = -3423.880597 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.18130 -40.86955 -39.30362 -37.32638 -36.86348 -35.89869 -34.37430 -32.54150 -30.77012 -30.39747 -27.31510 -25.26165 -24.73333 -23.09891 -22.17488 -21.43916 -20.01108 -19.41076 -18.64056 -17.88881 -17.65205 -17.26607 -17.14535 -16.36774 -15.93397 -15.75448 -15.32237 -15.16671 -14.64907 -14.51421 -14.32155 -13.96009 -13.71080 -13.07879 -12.99371 -12.90402 -12.74584 -12.67827 -12.61544 -12.34742 -12.12971 -11.84283 -11.48032 -11.12342 -10.76515 -10.60515 -10.09294 -9.75710 -9.18124 -8.19682 -6.34546 -0.18488 0.30522 1.27006 1.46252 1.46439 1.57391 1.62424 1.94736 2.32305 2.54729 2.89923 3.13571 3.49358 3.78857 3.82560 4.14680 4.39513 4.44159 4.47219 4.74012 4.87660 4.90540 5.04459 5.11179 5.25787 5.35813 5.40603 5.49950 5.56446 5.64182 5.70205 5.85842 5.97563 6.01740 6.23993 6.73022 6.86393 7.20757 7.30946 7.45858 8.89279 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.004490 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.043626 B = 6234.437709 C = 7123.128836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.268 3.732 3 H 0.005 0.995 4 C -0.547 4.547 5 H 0.076 0.924 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.971 3.029 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.261 1.261 12 N -0.692 5.692 13 C 0.545 3.455 14 O -0.595 6.595 15 C -0.183 4.183 16 C -0.062 4.062 17 C -0.135 4.135 18 C -0.062 4.062 19 C -0.158 4.158 20 C 0.197 3.803 21 N -0.641 5.641 22 C 0.667 3.333 23 O -0.586 6.586 24 O -0.512 6.512 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.020 0.980 28 H 0.265 0.735 29 H 0.406 0.594 30 H 0.150 0.850 31 H 0.169 0.831 32 H 0.166 0.834 33 H 0.146 0.854 34 H 0.427 0.573 35 H 0.451 0.549 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.135 -7.114 16.487 18.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.165 3.835 3 H 0.023 0.977 4 C -0.585 4.585 5 H 0.094 0.906 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.215 1.215 11 H -0.185 1.185 12 N -0.339 5.339 13 C 0.334 3.666 14 O -0.479 6.479 15 C -0.189 4.189 16 C -0.081 4.081 17 C -0.153 4.153 18 C -0.081 4.081 19 C -0.178 4.178 20 C 0.100 3.900 21 N -0.298 5.298 22 C 0.420 3.580 23 O -0.477 6.477 24 O -0.325 6.325 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.167 0.833 31 H 0.187 0.813 32 H 0.184 0.816 33 H 0.164 0.836 34 H 0.272 0.728 35 H 0.315 0.685 Dipole moment (debyes) X Y Z Total from point charges 3.033 -6.411 16.388 17.857 hybrid contribution -0.001 0.512 -0.980 1.106 sum 3.032 -5.899 15.408 16.775 Atomic orbital electron populations 1.21832 0.98022 1.00024 0.98722 1.18428 0.91156 0.92327 0.81572 0.97696 1.21528 1.36827 1.09361 0.90790 0.90618 1.25794 0.94825 0.95454 1.02377 1.70104 1.43109 1.17676 1.24847 0.85346 0.78795 0.78202 0.78100 1.19775 1.21497 1.18458 1.46147 1.64210 1.14228 1.09350 1.18656 0.77628 0.86212 0.84088 1.90488 1.54598 1.17555 1.85245 1.19732 1.10680 0.97595 0.90883 1.21486 0.94510 0.91160 1.00965 1.21492 1.00532 1.01983 0.91333 1.21647 0.94501 0.92468 0.99458 1.21508 1.02719 0.96083 0.97473 1.17767 0.96636 0.82175 0.93425 1.42502 1.46781 1.09910 1.30559 1.17748 0.79185 0.80711 0.80312 1.90972 1.33470 1.75405 1.47884 1.84213 1.64939 1.24840 1.58498 0.93027 0.93485 0.96139 0.92595 0.75773 0.83256 0.81330 0.81648 0.83637 0.72825 0.68477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.20 9.26 71.98 0.67 -5.54 16 2 C 0.27 13.63 2.43 44.25 0.11 13.74 16 3 H 0.01 0.31 7.56 -2.39 -0.02 0.29 16 4 C -0.55 -28.31 8.67 25.60 0.22 -28.09 16 5 H 0.08 3.62 7.72 -2.91 -0.02 3.60 16 6 C 0.02 0.84 5.29 84.66 0.45 1.29 16 7 N -0.92 -52.61 11.97 21.45 0.26 -52.36 16 8 Si 0.97 41.33 29.54 68.60 2.03 43.35 16 9 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 12 N -0.69 -28.23 5.02 -449.29 -2.25 -30.48 16 13 C 0.55 22.07 7.71 86.69 0.67 22.74 16 14 O -0.59 -28.01 13.47 -4.02 -0.05 -28.07 16 15 C -0.18 -5.84 5.89 -19.99 -0.12 -5.96 16 16 C -0.06 -1.46 9.52 22.52 0.21 -1.24 16 17 C -0.13 -2.35 10.02 22.24 0.22 -2.13 16 18 C -0.06 -1.14 10.03 22.30 0.22 -0.92 16 19 C -0.16 -4.06 8.70 22.37 0.19 -3.86 16 20 C 0.20 6.18 6.43 38.60 0.25 6.43 16 21 N -0.64 -21.01 4.87 -428.93 -2.09 -23.10 16 22 C 0.67 19.70 8.92 129.79 1.16 20.85 16 23 O -0.59 -18.59 14.32 19.83 0.28 -18.31 16 24 O -0.51 -11.49 13.48 -55.44 -0.75 -12.24 16 25 H 0.05 2.75 6.82 -2.39 -0.02 2.74 16 26 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.41 13.67 6.59 -92.71 -0.61 13.06 16 30 H 0.15 2.94 6.44 -2.91 -0.02 2.92 16 31 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 33 H 0.15 3.86 5.82 -2.91 -0.02 3.84 16 34 H 0.43 15.28 6.10 -92.71 -0.57 14.72 16 35 H 0.45 4.81 9.11 -74.06 -0.67 4.14 16 Total: -1.00 -71.56 303.71 1.00 -70.56 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.68 Total: 33.33 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 4.26 Total: 17.30 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -4.09 Total: -105.94 kcal Atomic # 8 Polarization: -58.10 SS G_CDS: -0.52 Total: -58.61 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -71.56 1.00 -70.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736540776.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.817 kcal (2) G-P(sol) polarization free energy of solvation -71.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds