Wall clock time and date at job start Tue Mar 31 2020 01:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47092 * 2 1 4 4 C 1.50701 * 109.47249 * 120.00176 * 2 1 3 5 5 H 1.08003 * 119.99692 * 120.00338 * 4 2 1 6 6 C 1.37874 * 120.00003 * 300.00389 * 4 2 1 7 7 N 1.31510 * 119.99963 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99875 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47192 * 89.99900 * 8 6 4 10 10 H 1.48495 * 109.46859 * 209.99354 * 8 6 4 11 11 H 1.48491 * 109.47137 * 329.99721 * 8 6 4 12 12 N 1.46502 * 109.47199 * 240.00311 * 2 1 3 13 13 C 1.34773 * 120.00219 * 84.99322 * 12 2 1 14 14 O 1.21599 * 119.99878 * 0.02562 * 13 12 2 15 15 C 1.47509 * 120.00476 * 179.97438 * 13 12 2 16 16 C 1.39696 * 120.19606 * 355.02356 * 15 13 12 17 17 C 1.37793 * 119.91977 * 180.29687 * 16 15 13 18 18 C 1.38570 * 120.33113 * 359.44707 * 17 16 15 19 19 C 1.38017 * 120.40153 * 0.55696 * 18 17 16 20 20 C 1.38846 * 120.07371 * 359.72201 * 19 18 17 21 21 N 1.39290 * 120.16517 * 180.02562 * 20 19 18 22 22 C 1.34777 * 119.99788 * 34.94146 * 21 20 19 23 23 O 1.21499 * 120.00057 * 5.30097 * 22 21 20 24 24 O 1.34639 * 119.99695 * 185.30942 * 22 21 20 25 25 H 1.09006 * 109.46766 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47150 * 299.99255 * 1 2 3 27 27 H 1.08997 * 109.47511 * 60.00088 * 1 2 3 28 28 H 0.97006 * 120.00260 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99839 * 264.99999 * 12 2 1 30 30 H 1.07998 * 120.03940 * 0.02562 * 16 15 13 31 31 H 1.08000 * 119.83125 * 179.70104 * 17 16 15 32 32 H 1.07996 * 119.79819 * 180.28562 * 18 17 16 33 33 H 1.08001 * 119.96184 * 179.74576 * 19 18 17 34 34 H 0.97003 * 119.99840 * 214.93108 * 21 20 19 35 35 H 0.96703 * 116.99687 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.6306 -0.5441 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4881 -2.5654 3.7120 12 7 2.0183 -0.6905 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8581 1.1617 -2.4116 15 6 2.6392 -0.7133 -3.5615 16 6 3.0713 -2.0393 -3.4802 17 6 3.5357 -2.6812 -4.6075 18 6 3.5661 -2.0217 -5.8258 19 6 3.1426 -0.7116 -5.9216 20 6 2.6767 -0.0468 -4.7951 21 7 2.2483 1.2751 -4.8897 22 6 1.6207 1.7021 -6.0035 23 8 1.3428 0.9129 -6.8845 24 8 1.3021 3.0031 -6.1398 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.7094 1.1616 3.4844 29 1 2.2490 -1.6317 -1.1527 30 1 3.0454 -2.5593 -2.5340 31 1 3.8739 -3.7048 -4.5420 32 1 3.9275 -2.5345 -6.7049 33 1 3.1732 -0.2031 -6.8739 34 1 2.4014 1.8884 -4.1539 35 1 0.8523 3.2617 -6.9559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736540777.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:40 Heat of formation + Delta-G solvation = -92.095902 kcal Electronic energy + Delta-G solvation = -21290.767992 eV Core-core repulsion = 17867.897067 eV Total energy + Delta-G solvation = -3422.870925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.97009 -39.54933 -38.00742 -36.26063 -35.25550 -34.51560 -32.59430 -31.20709 -29.69557 -28.64557 -25.31174 -23.97963 -23.65855 -21.56940 -20.94961 -19.74741 -18.86964 -18.04799 -17.42676 -16.65927 -16.12433 -16.01854 -15.47674 -14.88210 -14.56566 -14.34182 -14.17842 -13.89705 -13.53158 -13.00267 -12.71983 -12.45104 -12.05309 -11.75039 -11.67940 -11.59716 -11.12597 -11.02248 -10.81059 -10.70238 -10.47133 -10.33594 -10.27918 -9.22535 -9.11294 -8.96967 -8.60595 -8.24948 -7.97431 -6.16810 -4.26565 0.91333 1.27791 2.32754 2.74032 3.22138 3.28027 3.29334 3.30881 3.92812 4.05275 4.33108 4.54424 4.82348 4.92896 5.07221 5.15879 5.37441 5.41881 5.56763 5.85036 6.16293 6.20719 6.30987 6.42500 6.56631 6.77184 6.88669 6.92470 7.08733 7.28906 7.44285 7.48555 7.63635 7.84694 8.08843 8.30077 8.53820 8.69859 8.97189 9.40859 10.89171 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023658 B = 0.004530 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.243373 B = 6180.004072 C = 7136.745183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.695 5.695 13 C 0.548 3.452 14 O -0.559 6.559 15 C -0.152 4.152 16 C -0.067 4.067 17 C -0.142 4.142 18 C -0.081 4.081 19 C -0.134 4.134 20 C 0.215 3.785 21 N -0.633 5.633 22 C 0.666 3.334 23 O -0.572 6.572 24 O -0.518 6.518 25 H 0.027 0.973 26 H 0.091 0.909 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.390 0.610 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.434 0.566 35 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 -3.443 -15.129 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.342 5.342 13 C 0.334 3.666 14 O -0.440 6.440 15 C -0.158 4.158 16 C -0.086 4.086 17 C -0.161 4.161 18 C -0.100 4.100 19 C -0.154 4.154 20 C 0.118 3.882 21 N -0.291 5.291 22 C 0.419 3.581 23 O -0.461 6.461 24 O -0.327 6.327 25 H 0.046 0.954 26 H 0.110 0.890 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.224 0.776 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.280 0.720 35 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 4.118 -2.798 -15.007 15.811 hybrid contribution 0.093 -0.470 0.716 0.862 sum 4.211 -3.268 -14.291 15.253 Atomic orbital electron populations 1.22081 0.98256 0.99249 1.00999 1.18823 0.91163 0.94071 0.79727 0.93080 1.21190 1.32621 1.13346 0.90239 0.92011 1.24881 0.94720 0.94948 0.99080 1.69898 1.35711 1.22409 1.23972 0.86429 0.78613 0.79837 0.82110 1.20526 1.21056 1.19810 1.46470 1.63852 1.13641 1.10224 1.18045 0.78636 0.86641 0.83253 1.90538 1.52870 1.15900 1.84709 1.20099 1.06830 0.95049 0.93778 1.21239 0.95652 0.92461 0.99276 1.21068 1.02066 1.00530 0.92453 1.21134 0.97302 0.93805 0.97801 1.21114 1.00290 0.95867 0.98173 1.17379 0.94631 0.82773 0.93372 1.42252 1.57512 1.11051 1.18298 1.17726 0.77100 0.80786 0.82466 1.91043 1.58179 1.54932 1.41976 1.84224 1.74820 1.25455 1.48221 0.95391 0.89018 0.96605 0.92510 0.77615 0.84769 0.85310 0.85358 0.84452 0.72028 0.71126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.28 16 2 C 0.26 6.56 2.56 -69.08 -0.18 6.38 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.44 11.32 55.43 0.63 -23.81 16 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 N -0.70 -14.20 5.02 -55.98 -0.28 -14.48 16 13 C 0.55 10.88 7.72 -12.48 -0.10 10.79 16 14 O -0.56 -12.52 13.55 5.28 0.07 -12.45 16 15 C -0.15 -2.46 5.89 -104.81 -0.62 -3.07 16 16 C -0.07 -0.87 9.52 -39.20 -0.37 -1.24 16 17 C -0.14 -1.54 10.02 -39.62 -0.40 -1.94 16 18 C -0.08 -0.90 10.03 -39.54 -0.40 -1.29 16 19 C -0.13 -1.81 8.63 -39.44 -0.34 -2.15 16 20 C 0.21 3.37 6.25 -83.48 -0.52 2.85 16 21 N -0.63 -10.04 4.70 -14.10 -0.07 -10.11 16 22 C 0.67 9.87 8.84 54.06 0.48 10.35 16 23 O -0.57 -9.40 14.92 -19.27 -0.29 -9.69 16 24 O -0.52 -5.92 13.48 -40.32 -0.54 -6.47 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 29 H 0.39 6.84 6.59 -40.82 -0.27 6.57 16 30 H 0.13 1.52 6.44 -52.49 -0.34 1.18 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.14 1.83 6.53 -52.49 -0.34 1.49 16 34 H 0.43 7.25 6.41 -40.82 -0.26 6.99 16 35 H 0.43 2.56 9.11 45.56 0.42 2.97 16 LS Contribution 303.79 15.07 4.58 4.58 Total: -1.00 -32.06 303.79 -6.15 -38.21 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -2.74 Total: 14.08 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -2.49 Total: 4.92 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.28 Total: -48.40 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.76 Total: -28.60 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.06 -6.15 -38.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736540777.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.889 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds