Wall clock time and date at job start Tue Mar 31 2020 01:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47092 * 2 1 4 4 C 1.50701 * 109.47249 * 120.00176 * 2 1 3 5 5 H 1.08003 * 119.99692 * 120.00338 * 4 2 1 6 6 C 1.37874 * 120.00003 * 300.00389 * 4 2 1 7 7 N 1.31510 * 119.99963 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99875 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47192 * 89.99900 * 8 6 4 10 10 H 1.48495 * 109.46859 * 209.99354 * 8 6 4 11 11 H 1.48491 * 109.47137 * 329.99721 * 8 6 4 12 12 N 1.46502 * 109.47199 * 240.00311 * 2 1 3 13 13 C 1.34773 * 120.00219 * 84.99322 * 12 2 1 14 14 O 1.21599 * 119.99878 * 0.02562 * 13 12 2 15 15 C 1.47509 * 120.00476 * 179.97438 * 13 12 2 16 16 C 1.39696 * 120.19606 * 355.02356 * 15 13 12 17 17 C 1.37793 * 119.91977 * 180.29687 * 16 15 13 18 18 C 1.38570 * 120.33113 * 359.44707 * 17 16 15 19 19 C 1.38017 * 120.40153 * 0.55696 * 18 17 16 20 20 C 1.38846 * 120.07371 * 359.72201 * 19 18 17 21 21 N 1.39290 * 120.16517 * 180.02562 * 20 19 18 22 22 C 1.34777 * 119.99788 * 34.94146 * 21 20 19 23 23 O 1.21499 * 120.00057 * 5.30097 * 22 21 20 24 24 O 1.34639 * 119.99695 * 185.30942 * 22 21 20 25 25 H 1.09006 * 109.46766 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47150 * 299.99255 * 1 2 3 27 27 H 1.08997 * 109.47511 * 60.00088 * 1 2 3 28 28 H 0.97006 * 120.00260 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99839 * 264.99999 * 12 2 1 30 30 H 1.07998 * 120.03940 * 0.02562 * 16 15 13 31 31 H 1.08000 * 119.83125 * 179.70104 * 17 16 15 32 32 H 1.07996 * 119.79819 * 180.28562 * 18 17 16 33 33 H 1.08001 * 119.96184 * 179.74576 * 19 18 17 34 34 H 0.97003 * 119.99840 * 214.93108 * 21 20 19 35 35 H 0.96703 * 116.99687 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.6306 -0.5441 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4881 -2.5654 3.7120 12 7 2.0183 -0.6905 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8581 1.1617 -2.4116 15 6 2.6392 -0.7133 -3.5615 16 6 3.0713 -2.0393 -3.4802 17 6 3.5357 -2.6812 -4.6075 18 6 3.5661 -2.0217 -5.8258 19 6 3.1426 -0.7116 -5.9216 20 6 2.6767 -0.0468 -4.7951 21 7 2.2483 1.2751 -4.8897 22 6 1.6207 1.7021 -6.0035 23 8 1.3428 0.9129 -6.8845 24 8 1.3021 3.0031 -6.1398 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.7094 1.1616 3.4844 29 1 2.2490 -1.6317 -1.1527 30 1 3.0454 -2.5593 -2.5340 31 1 3.8739 -3.7048 -4.5420 32 1 3.9275 -2.5345 -6.7049 33 1 3.1732 -0.2031 -6.8739 34 1 2.4014 1.8884 -4.1539 35 1 0.8523 3.2617 -6.9559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736540777.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:39 Heat of formation + Delta-G solvation = -116.467174 kcal Electronic energy + Delta-G solvation = -21291.824810 eV Core-core repulsion = 17867.897067 eV Total energy + Delta-G solvation = -3423.927743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.12676 -40.85365 -39.31186 -37.30532 -36.85922 -35.89867 -34.38681 -32.53559 -30.76696 -30.35198 -27.35074 -25.26157 -24.71827 -23.07094 -22.14825 -21.40637 -20.03949 -19.44233 -18.62119 -17.86415 -17.64613 -17.30289 -17.08916 -16.39028 -15.94082 -15.71290 -15.40678 -15.16525 -14.67546 -14.55700 -14.28504 -13.89898 -13.61825 -13.07195 -12.95958 -12.88520 -12.75022 -12.71201 -12.57366 -12.27226 -12.12190 -11.84019 -11.56393 -11.12401 -10.77737 -10.58778 -10.09491 -9.75921 -9.25349 -8.17358 -6.34905 -0.19289 0.28440 1.28834 1.47070 1.47161 1.58028 1.63194 1.95295 2.32261 2.55107 2.88288 3.13781 3.52281 3.78469 3.81088 4.13702 4.39362 4.41538 4.46699 4.72316 4.88176 4.90781 5.07293 5.13540 5.22987 5.35205 5.40309 5.48064 5.57027 5.65884 5.69040 5.86884 5.96208 6.07128 6.23029 6.71689 6.86924 7.22555 7.31062 7.46249 8.89068 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023658 B = 0.004530 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.243373 B = 6180.004072 C = 7136.745183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.271 3.729 3 H 0.004 0.996 4 C -0.546 4.546 5 H 0.076 0.924 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.258 1.258 12 N -0.693 5.693 13 C 0.544 3.456 14 O -0.594 6.594 15 C -0.177 4.177 16 C -0.066 4.066 17 C -0.129 4.129 18 C -0.064 4.064 19 C -0.144 4.144 20 C 0.193 3.807 21 N -0.643 5.643 22 C 0.667 3.333 23 O -0.590 6.590 24 O -0.513 6.513 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.009 0.991 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.150 0.850 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.136 0.864 34 H 0.427 0.573 35 H 0.450 0.550 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.684 -6.252 -16.055 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.022 0.978 4 C -0.585 4.585 5 H 0.094 0.906 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.182 1.182 12 N -0.341 5.341 13 C 0.333 3.667 14 O -0.477 6.477 15 C -0.183 4.183 16 C -0.085 4.085 17 C -0.148 4.148 18 C -0.083 4.083 19 C -0.164 4.164 20 C 0.097 3.903 21 N -0.299 5.299 22 C 0.421 3.579 23 O -0.482 6.482 24 O -0.325 6.325 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.167 0.833 31 H 0.188 0.812 32 H 0.185 0.815 33 H 0.154 0.846 34 H 0.270 0.730 35 H 0.314 0.686 Dipole moment (debyes) X Y Z Total from point charges 5.404 -5.630 -15.983 17.787 hybrid contribution -0.286 0.432 0.882 1.023 sum 5.119 -5.199 -15.101 16.771 Atomic orbital electron populations 1.21906 0.98367 0.99457 0.99536 1.18404 0.91038 0.92171 0.81614 0.97820 1.21526 1.32647 1.13681 0.90600 0.90603 1.25793 0.94800 0.95570 1.02331 1.70050 1.36944 1.23955 1.24633 0.85327 0.77703 0.79274 0.77928 1.20372 1.21143 1.18203 1.46156 1.64356 1.14255 1.09345 1.18660 0.77667 0.86363 0.84018 1.90515 1.54199 1.17624 1.85405 1.19845 1.09793 0.96551 0.92097 1.21508 0.94875 0.91038 1.01044 1.21513 1.00071 1.02014 0.91175 1.21632 0.94746 0.92520 0.99383 1.21255 1.00789 0.97102 0.97271 1.17699 0.95614 0.82885 0.94067 1.42339 1.57827 1.11398 1.18332 1.17740 0.76734 0.81454 0.81991 1.91015 1.59016 1.55689 1.42446 1.84210 1.74775 1.23675 1.49847 0.94142 0.91318 0.97140 0.92553 0.75816 0.83286 0.81205 0.81500 0.84579 0.72957 0.68566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.80 9.26 71.98 0.67 -6.13 16 2 C 0.27 13.89 2.56 44.24 0.11 14.00 16 3 H 0.00 0.23 7.58 -2.39 -0.02 0.22 16 4 C -0.55 -28.30 8.73 25.60 0.22 -28.07 16 5 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.02 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -52.03 11.32 21.45 0.24 -51.79 16 8 Si 0.97 41.15 29.54 68.60 2.03 43.18 16 9 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.29 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 12 N -0.69 -28.63 5.02 -449.29 -2.25 -30.88 16 13 C 0.54 22.20 7.72 86.69 0.67 22.87 16 14 O -0.59 -28.06 13.55 -4.03 -0.05 -28.12 16 15 C -0.18 -5.67 5.89 -19.99 -0.12 -5.78 16 16 C -0.07 -1.53 9.52 22.52 0.21 -1.32 16 17 C -0.13 -2.21 10.02 22.24 0.22 -1.99 16 18 C -0.06 -1.15 10.03 22.30 0.22 -0.93 16 19 C -0.14 -3.63 8.63 22.36 0.19 -3.44 16 20 C 0.19 6.04 6.25 38.60 0.24 6.28 16 21 N -0.64 -20.98 4.70 -428.92 -2.02 -23.00 16 22 C 0.67 19.97 8.84 129.79 1.15 21.11 16 23 O -0.59 -19.27 14.92 19.84 0.30 -18.97 16 24 O -0.51 -11.69 13.48 -55.48 -0.75 -12.43 16 25 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 29 H 0.41 13.88 6.59 -92.71 -0.61 13.27 16 30 H 0.15 2.94 6.44 -2.91 -0.02 2.93 16 31 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.14 3.45 6.53 -2.91 -0.02 3.43 16 34 H 0.43 15.09 6.41 -92.71 -0.59 14.49 16 35 H 0.45 5.05 9.11 -74.06 -0.67 4.37 16 Total: -1.00 -71.76 303.79 1.03 -70.73 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: -0.71 Total: 33.44 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: 4.25 Total: 17.85 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -4.03 Total: -105.67 kcal Atomic # 8 Polarization: -59.02 SS G_CDS: -0.51 Total: -59.52 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -71.76 1.03 -70.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736540777.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.742 kcal (2) G-P(sol) polarization free energy of solvation -71.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds