Wall clock time and date at job start Tue Mar 31 2020 01:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47444 * 2 1 4 4 C 1.50700 * 109.46975 * 239.99923 * 2 1 3 5 5 H 1.08003 * 120.00580 * 240.00009 * 4 2 1 6 6 C 1.37883 * 119.99949 * 60.00146 * 4 2 1 7 7 N 1.31511 * 119.99843 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99809 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46870 * 179.97438 * 8 6 4 10 10 H 1.48491 * 109.47541 * 299.99958 * 8 6 4 11 11 H 1.48504 * 109.47124 * 60.00203 * 8 6 4 12 12 N 1.46498 * 109.47274 * 120.00554 * 2 1 3 13 13 C 1.34785 * 119.99483 * 274.99968 * 12 2 1 14 14 O 1.21552 * 119.99915 * 359.97438 * 13 12 2 15 15 C 1.47859 * 119.99860 * 180.02562 * 13 12 2 16 16 C 1.39615 * 120.10986 * 359.71462 * 15 13 12 17 17 C 1.37981 * 119.99053 * 179.72153 * 16 15 13 18 18 C 1.38262 * 120.22314 * 0.56285 * 17 16 15 19 19 C 1.38936 * 120.22193 * 359.71822 * 18 17 16 20 20 N 1.39985 * 119.99727 * 180.02562 * 19 18 17 21 21 C 1.34779 * 119.99826 * 213.29905 * 20 19 18 22 22 O 1.21510 * 119.99930 * 5.32110 * 21 20 19 23 23 O 1.34652 * 119.99803 * 185.31400 * 21 20 19 24 24 C 1.38637 * 120.00485 * 359.97438 * 19 18 17 25 25 H 1.09000 * 109.47030 * 60.00010 * 1 2 3 26 26 H 1.09000 * 109.47444 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47064 * 300.00086 * 1 2 3 28 28 H 0.96998 * 120.00064 * 179.97438 * 7 6 4 29 29 H 0.96996 * 120.00728 * 95.00057 * 12 2 1 30 30 H 1.07997 * 120.00668 * 0.02562 * 16 15 13 31 31 H 1.08007 * 119.88714 * 180.25664 * 17 16 15 32 32 H 1.07997 * 119.88321 * 179.73962 * 18 17 16 33 33 H 0.96995 * 119.99931 * 33.30571 * 20 19 18 34 34 H 0.96698 * 116.99878 * 180.02562 * 23 21 20 35 35 H 1.07990 * 120.10738 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8268 -0.4199 -5.2205 10 1 3.8073 -1.1191 -4.0078 11 1 1.8279 -2.5199 -4.0082 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8584 1.1612 2.4116 15 6 2.6405 -0.7152 3.5642 16 6 2.9681 -2.0711 3.5054 17 6 3.4338 -2.7176 4.6319 18 6 3.5667 -2.0301 5.8241 19 6 3.2378 -0.6820 5.8943 20 7 3.3747 0.0097 7.1036 21 6 2.5171 1.0024 7.4129 22 8 1.5685 1.2331 6.6895 23 8 2.7116 1.7384 8.5236 24 6 2.7750 -0.0216 4.7666 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7087 1.1613 -3.4844 29 1 2.2491 -1.6318 1.1525 30 1 2.8617 -2.6127 2.5771 31 1 3.6906 -3.7656 4.5835 32 1 3.9278 -2.5425 6.7034 33 1 4.0868 -0.2254 7.7188 34 1 2.0700 2.4389 8.7039 35 1 2.5193 1.0262 4.8192 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736541341.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:42 Heat of formation + Delta-G solvation = -122.395194 kcal Electronic energy + Delta-G solvation = -20834.216050 eV Core-core repulsion = 17410.031249 eV Total energy + Delta-G solvation = -3424.184801 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.96798 -40.92987 -39.44739 -37.21943 -36.77770 -36.08895 -34.37515 -32.34573 -31.17858 -30.14835 -27.36642 -25.34537 -24.79772 -22.82934 -22.46654 -21.25335 -20.23462 -19.47083 -18.44342 -17.98728 -17.41570 -17.08903 -16.97153 -16.79745 -16.06028 -15.86407 -15.47137 -14.84155 -14.67988 -14.64559 -14.44500 -13.93694 -13.68489 -13.00425 -12.92792 -12.82896 -12.76690 -12.73359 -12.65000 -12.28360 -12.15074 -11.88294 -11.53282 -11.14814 -10.89277 -10.59836 -10.07022 -9.75913 -9.30719 -8.17489 -6.36254 -0.16339 0.24612 1.22525 1.46031 1.49141 1.56858 1.58266 1.98319 2.32025 2.54842 2.88941 3.12908 3.50740 3.80452 3.93020 4.14795 4.20616 4.42243 4.46866 4.70132 4.87161 4.88435 5.05452 5.15428 5.22232 5.33248 5.39392 5.41448 5.56947 5.63339 5.68538 5.87235 5.92820 6.05962 6.24121 6.70109 6.88967 7.27240 7.29659 7.47399 8.89220 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031168 B = 0.003730 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.140451 B = 7504.760728 C = 8162.369471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.004 1.004 4 C -0.549 4.549 5 H 0.078 0.922 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.978 3.022 9 H -0.287 1.287 10 H -0.269 1.269 11 H -0.261 1.261 12 N -0.693 5.693 13 C 0.535 3.465 14 O -0.603 6.603 15 C -0.130 4.130 16 C -0.097 4.097 17 C -0.090 4.090 18 C -0.097 4.097 19 C 0.140 3.860 20 N -0.632 5.632 21 C 0.660 3.340 22 O -0.602 6.602 23 O -0.507 6.507 24 C -0.093 4.093 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.006 0.994 28 H 0.266 0.734 29 H 0.406 0.594 30 H 0.146 0.854 31 H 0.182 0.818 32 H 0.181 0.819 33 H 0.438 0.562 34 H 0.450 0.550 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.412 -10.195 21.307 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.096 0.904 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.802 3.198 9 H -0.213 1.213 10 H -0.194 1.194 11 H -0.185 1.185 12 N -0.342 5.342 13 C 0.323 3.677 14 O -0.486 6.486 15 C -0.134 4.134 16 C -0.116 4.116 17 C -0.108 4.108 18 C -0.117 4.117 19 C 0.047 3.953 20 N -0.287 5.287 21 C 0.413 3.587 22 O -0.493 6.493 23 O -0.320 6.320 24 C -0.114 4.114 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.025 0.975 28 H 0.075 0.925 29 H 0.243 0.757 30 H 0.164 0.836 31 H 0.200 0.800 32 H 0.198 0.802 33 H 0.279 0.721 34 H 0.314 0.686 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.947 -9.334 20.870 24.204 hybrid contribution -0.262 0.683 -0.707 1.017 sum 7.685 -8.651 20.163 23.248 Atomic orbital electron populations 1.21911 0.98296 0.99642 0.99430 1.18412 0.91186 0.91974 0.81867 0.98590 1.21503 1.32887 1.13776 0.90483 0.90364 1.25879 0.94760 0.95568 1.02523 1.70063 1.36911 1.24017 1.24771 0.85308 0.78665 0.78717 0.77103 1.21286 1.19404 1.18527 1.46170 1.64562 1.14230 1.09280 1.19012 0.77778 0.86372 0.84547 1.90696 1.53601 1.18345 1.85989 1.19798 1.05073 0.96019 0.92531 1.21661 0.97022 0.91615 1.01312 1.21408 0.97166 1.01938 0.90307 1.21498 0.99817 0.89553 1.00793 1.17405 1.02633 0.92059 0.83226 1.41658 1.33095 1.33714 1.20263 1.17970 0.81050 0.79874 0.79799 1.91173 1.33092 1.71566 1.53467 1.84126 1.58513 1.48533 1.40787 1.21071 0.98926 1.00182 0.91246 0.91176 0.93710 0.97525 0.92489 0.75668 0.83596 0.80040 0.80167 0.72126 0.68598 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.23 9.26 71.98 0.67 -6.57 16 2 C 0.27 14.78 2.56 44.25 0.11 14.89 16 3 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 4 C -0.55 -29.68 8.73 25.60 0.22 -29.45 16 5 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -54.05 11.32 21.45 0.24 -53.80 16 8 Si 0.98 42.20 29.54 68.60 2.03 44.22 16 9 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 11 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 12 N -0.69 -31.27 5.02 -448.96 -2.25 -33.52 16 13 C 0.53 24.86 7.74 86.79 0.67 25.53 16 14 O -0.60 -34.35 16.01 -3.88 -0.06 -34.41 16 15 C -0.13 -4.59 5.87 -20.10 -0.12 -4.70 16 16 C -0.10 -2.32 9.54 22.54 0.21 -2.10 16 17 C -0.09 -1.35 10.02 22.21 0.22 -1.13 16 18 C -0.10 -1.38 9.95 22.44 0.22 -1.16 16 19 C 0.14 3.22 6.27 38.10 0.24 3.46 16 20 N -0.63 -11.41 5.35 -429.54 -2.30 -13.70 16 21 C 0.66 15.38 8.86 129.79 1.15 16.53 16 22 O -0.60 -20.94 14.82 19.81 0.29 -20.65 16 23 O -0.51 -7.25 13.48 -55.62 -0.75 -8.00 16 24 C -0.09 -3.19 8.20 22.66 0.19 -3.00 16 25 H 0.07 4.07 6.07 -2.39 -0.01 4.06 16 26 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.41 14.91 6.57 -92.71 -0.61 14.30 16 30 H 0.15 2.99 6.40 -2.91 -0.02 2.98 16 31 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 32 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 33 H 0.44 3.93 8.92 -92.71 -0.83 3.10 16 34 H 0.45 2.94 9.11 -74.06 -0.67 2.26 16 35 H 0.11 4.53 6.00 -2.92 -0.02 4.51 16 Total: -1.00 -85.79 308.25 0.50 -85.29 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -0.94 Total: 21.14 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 4.24 Total: 13.44 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -4.31 Total: -101.03 kcal Atomic # 8 Polarization: -62.54 SS G_CDS: -0.52 Total: -63.06 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -85.79 0.50 -85.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736541341.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.109 kcal (2) G-P(sol) polarization free energy of solvation -85.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds