Wall clock time and date at job start Tue Mar 31 2020 01:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46983 * 2 1 4 4 C 1.50706 * 109.47027 * 119.99626 * 2 1 3 5 5 H 1.07992 * 119.99567 * 120.00140 * 4 2 1 6 6 C 1.37876 * 119.99790 * 300.00306 * 4 2 1 7 7 N 1.31512 * 120.00314 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99727 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46825 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47258 * 119.99827 * 8 6 4 11 11 H 1.48493 * 109.46954 * 240.00166 * 8 6 4 12 12 N 1.46496 * 109.47587 * 239.99741 * 2 1 3 13 13 C 1.34774 * 119.99894 * 84.99820 * 12 2 1 14 14 O 1.21555 * 120.00019 * 0.02562 * 13 12 2 15 15 C 1.47863 * 120.00214 * 179.72779 * 13 12 2 16 16 C 1.39610 * 120.10894 * 359.97438 * 15 13 12 17 17 C 1.37975 * 119.99556 * 179.74407 * 16 15 13 18 18 C 1.38263 * 120.22018 * 0.55581 * 17 16 15 19 19 C 1.38933 * 120.22040 * 359.69675 * 18 17 16 20 20 N 1.39990 * 119.99532 * 180.02562 * 19 18 17 21 21 C 1.34783 * 120.00098 * 213.30282 * 20 19 18 22 22 O 1.21509 * 119.99582 * 5.32058 * 21 20 19 23 23 O 1.34645 * 119.99782 * 185.32169 * 21 20 19 24 24 C 1.38629 * 120.00517 * 0.02562 * 19 18 17 25 25 H 1.08997 * 109.47049 * 60.00429 * 1 2 3 26 26 H 1.09000 * 109.46983 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47398 * 300.00021 * 1 2 3 28 28 H 0.97007 * 119.99931 * 180.02562 * 7 6 4 29 29 H 0.96999 * 120.00312 * 265.00697 * 12 2 1 30 30 H 1.08004 * 120.00336 * 359.97438 * 16 15 13 31 31 H 1.08003 * 119.89263 * 180.27272 * 17 16 15 32 32 H 1.08000 * 119.88516 * 179.71626 * 18 17 16 33 33 H 0.96997 * 120.00010 * 33.30984 * 20 19 18 34 34 H 0.96700 * 116.99329 * 180.02562 * 23 21 20 35 35 H 1.08007 * 120.10778 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3212 -1.1202 4.0081 9 1 3.1453 -2.2875 3.6039 10 1 3.1464 -0.1872 4.8166 11 1 1.1659 -1.5865 4.8161 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3570 14 8 1.8584 1.1612 -2.4116 15 6 2.6458 -0.7138 -3.5628 16 6 2.9845 -2.0668 -3.5011 17 6 3.4446 -2.7148 -4.6290 18 6 3.5829 -2.0259 -5.8198 19 6 3.2535 -0.6780 -5.8901 20 7 3.3948 0.0149 -7.0983 21 6 3.7399 1.3177 -7.0917 22 8 4.0226 1.8660 -6.0447 23 8 3.7715 2.0117 -8.2451 24 6 2.7849 -0.0192 -4.7640 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7085 1.1614 3.4844 29 1 2.2491 -1.6318 -1.1525 30 1 2.8829 -2.6072 -2.5715 31 1 3.7020 -3.7626 -4.5805 32 1 3.9479 -2.5373 -6.6982 33 1 3.2442 -0.4427 -7.9402 34 1 4.0253 2.9431 -8.1901 35 1 2.5279 1.0286 -4.8169 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736541342.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:46 Heat of formation + Delta-G solvation = -92.845351 kcal Electronic energy + Delta-G solvation = -20831.585452 eV Core-core repulsion = 17408.682028 eV Total energy + Delta-G solvation = -3422.903424 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.00574 -39.55772 -38.13454 -36.35398 -35.06731 -34.78963 -32.42194 -31.11456 -29.91090 -28.52907 -25.24534 -23.99115 -23.84450 -21.52588 -21.09157 -19.60162 -19.14728 -18.16408 -17.42904 -16.44584 -16.24984 -15.99645 -15.53097 -15.19403 -14.55748 -14.23705 -14.03924 -13.76600 -13.69069 -13.08014 -12.84707 -12.42851 -11.93845 -11.83742 -11.74321 -11.55690 -11.07949 -10.96104 -10.83495 -10.71086 -10.49466 -10.28291 -10.21997 -9.12320 -9.02133 -8.92226 -8.53759 -8.35418 -7.88469 -6.10338 -4.19628 0.92147 1.26856 2.02337 2.52754 3.25433 3.30583 3.33246 3.35925 3.98626 4.16923 4.30557 4.40713 4.80157 4.86979 5.16297 5.22065 5.25364 5.42505 5.49258 5.84408 6.08457 6.17399 6.26691 6.35223 6.49814 6.84095 6.87870 6.99312 7.00793 7.17384 7.47100 7.58636 7.71655 7.94037 8.06374 8.16794 8.66879 8.79865 9.12330 9.47771 10.95771 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029482 B = 0.003732 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.512663 B = 7500.446227 C = 8030.006954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.701 5.701 13 C 0.540 3.460 14 O -0.545 6.545 15 C -0.099 4.099 16 C -0.100 4.100 17 C -0.107 4.107 18 C -0.126 4.126 19 C 0.143 3.857 20 N -0.648 5.648 21 C 0.660 3.340 22 O -0.547 6.547 23 O -0.525 6.525 24 C -0.066 4.066 25 H 0.015 0.985 26 H 0.027 0.973 27 H 0.091 0.909 28 H 0.264 0.736 29 H 0.388 0.612 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.417 0.583 34 H 0.434 0.566 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.741 -6.609 -20.151 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.348 5.348 13 C 0.325 3.675 14 O -0.425 6.425 15 C -0.103 4.103 16 C -0.119 4.119 17 C -0.125 4.125 18 C -0.147 4.147 19 C 0.051 3.949 20 N -0.301 5.301 21 C 0.412 3.588 22 O -0.434 6.434 23 O -0.336 6.336 24 C -0.087 4.087 25 H 0.034 0.966 26 H 0.046 0.954 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.222 0.778 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.253 0.747 34 H 0.294 0.706 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.463 -5.658 -19.590 20.874 hybrid contribution 0.526 -0.523 0.436 0.860 sum 4.989 -6.181 -19.155 20.736 Atomic orbital electron populations 1.22078 0.98327 0.99171 1.00989 1.18801 0.91124 0.94126 0.79825 0.93171 1.21247 1.32404 1.13239 0.90272 0.91973 1.24891 0.94807 0.94961 0.99066 1.69918 1.35879 1.22472 1.23769 0.86382 0.78576 0.79521 0.82548 1.19721 1.20871 1.20891 1.46474 1.64546 1.13538 1.10292 1.18177 0.79125 0.86819 0.83344 1.90744 1.51214 1.15524 1.84973 1.20206 1.01324 0.94046 0.94727 1.21446 0.97770 0.93588 0.99091 1.20857 0.99849 1.00041 0.91768 1.20912 1.01865 0.92723 0.99180 1.17301 1.01151 0.91413 0.85068 1.41797 1.71451 1.07845 1.09032 1.17761 0.76668 0.82499 0.81875 1.91187 1.51874 1.69068 1.31248 1.84134 1.84488 1.30472 1.34494 1.21285 0.95421 1.01560 0.90470 0.96577 0.95411 0.89066 0.92623 0.77828 0.84956 0.84873 0.85318 0.74669 0.70574 0.83357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 2 C 0.26 6.87 2.56 -69.08 -0.18 6.70 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16 4 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.74 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.70 -15.23 5.02 -55.87 -0.28 -15.51 16 13 C 0.54 11.79 7.74 -12.32 -0.10 11.69 16 14 O -0.55 -14.14 16.01 5.32 0.09 -14.06 16 15 C -0.10 -1.70 5.87 -104.99 -0.62 -2.32 16 16 C -0.10 -1.32 9.54 -39.17 -0.37 -1.69 16 17 C -0.11 -1.09 10.02 -39.67 -0.40 -1.49 16 18 C -0.13 -1.24 9.95 -39.32 -0.39 -1.63 16 19 C 0.14 1.79 6.28 -83.73 -0.53 1.26 16 20 N -0.65 -6.51 5.35 -14.30 -0.08 -6.59 16 21 C 0.66 7.82 8.86 54.06 0.48 8.30 16 22 O -0.55 -9.07 14.82 -19.28 -0.29 -9.36 16 23 O -0.53 -4.11 13.48 -40.34 -0.54 -4.66 16 24 C -0.07 -1.10 8.20 -38.99 -0.32 -1.42 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.39 7.16 6.57 -40.82 -0.27 6.89 16 30 H 0.13 1.55 6.40 -52.48 -0.34 1.22 16 31 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.42 2.61 8.92 -40.82 -0.36 2.25 16 34 H 0.43 1.63 9.11 45.56 0.42 2.04 16 35 H 0.15 2.85 6.00 -52.48 -0.31 2.53 16 LS Contribution 308.25 15.07 4.65 4.65 Total: -1.00 -35.69 308.25 -6.13 -41.82 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -2.81 Total: 9.39 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -2.47 Total: 3.10 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.27 Total: -46.63 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.74 Total: -28.08 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.69 -6.13 -41.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736541342.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.025 kcal (2) G-P(sol) polarization free energy of solvation -35.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds