Wall clock time and date at job start Tue Mar 31 2020 01:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47480 * 2 1 4 4 C 1.36871 * 119.99885 * 262.93054 * 3 2 1 5 5 H 1.07999 * 120.00143 * 196.36345 * 4 3 2 6 6 C 1.39050 * 119.99957 * 16.36851 * 4 3 2 7 7 N 1.31362 * 120.00314 * 10.44585 * 6 4 3 8 8 Si 1.86806 * 119.99823 * 190.45091 * 6 4 3 9 9 H 1.48498 * 109.47312 * 59.99910 * 8 6 4 10 10 H 1.48505 * 109.46980 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47067 * 299.99363 * 8 6 4 12 12 C 1.34765 * 120.00002 * 82.93290 * 3 2 1 13 13 O 1.21593 * 120.00459 * 5.57498 * 12 3 2 14 14 C 1.47741 * 120.00134 * 185.57924 * 12 3 2 15 15 C 1.39696 * 120.11763 * 214.31117 * 14 12 3 16 16 C 1.37951 * 119.98486 * 179.97438 * 15 14 12 17 17 C 1.38268 * 120.23235 * 0.06375 * 16 15 14 18 18 C 1.38957 * 120.23827 * 359.97438 * 17 16 15 19 19 N 1.39980 * 119.99743 * 180.02562 * 18 17 16 20 20 C 1.34774 * 120.00171 * 324.32012 * 19 18 17 21 21 O 1.21516 * 120.00190 * 4.35832 * 20 19 18 22 22 O 1.34644 * 120.00472 * 184.35984 * 20 19 18 23 23 C 1.38605 * 120.00717 * 359.97438 * 18 17 16 24 24 H 1.08998 * 109.47095 * 59.99831 * 1 2 3 25 25 H 1.09005 * 109.47589 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46998 * 299.99937 * 1 2 3 27 27 H 1.09007 * 109.47051 * 239.99476 * 2 1 3 28 28 H 1.09001 * 109.47513 * 120.00432 * 2 1 3 29 29 H 0.97001 * 120.00202 * 179.97438 * 7 6 4 30 30 H 1.07997 * 120.00677 * 0.03736 * 15 14 12 31 31 H 1.08006 * 119.88066 * 180.02562 * 16 15 14 32 32 H 1.08009 * 119.88240 * 179.97438 * 17 16 15 33 33 H 0.96998 * 120.00008 * 144.32380 * 19 18 17 34 34 H 0.96695 * 117.00751 * 179.97438 * 22 20 19 35 35 H 1.08001 * 120.11594 * 179.74736 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3840 1.9777 -1.1763 5 1 2.9819 2.8770 -1.1628 6 6 1.9857 1.4259 -2.3889 7 7 1.0956 0.4601 -2.4103 8 14 2.7165 2.0581 -3.9877 9 1 4.1884 1.8623 -3.9707 10 1 2.1312 1.3101 -5.1293 11 1 2.4110 3.5040 -4.1339 12 6 2.1076 2.0643 1.1582 13 8 1.8803 1.5045 2.2134 14 6 2.4817 3.4935 1.1460 15 6 3.2468 4.0268 2.1860 16 6 3.5950 5.3616 2.1715 17 6 3.1881 6.1759 1.1308 18 6 2.4261 5.6556 0.0918 19 7 2.0174 6.4845 -0.9595 20 6 1.6921 7.7697 -0.7170 21 8 1.8289 8.2310 0.3988 22 8 1.2154 8.5426 -1.7111 23 6 2.0716 4.3156 0.0958 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.8175 0.0754 -3.2562 30 1 3.5666 3.3940 3.0007 31 1 4.1870 5.7720 2.9763 32 1 3.4636 7.2203 1.1254 33 1 1.9683 6.1339 -1.8626 34 1 0.9955 9.4577 -1.4889 35 1 1.4759 3.9103 -0.7087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737067867.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:46 Heat of formation + Delta-G solvation = -69.483040 kcal Electronic energy + Delta-G solvation = -21789.945033 eV Core-core repulsion = 18368.054675 eV Total energy + Delta-G solvation = -3421.890358 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69369 -39.29907 -37.82226 -36.08339 -35.19641 -34.58093 -31.67106 -31.15877 -29.29243 -29.10189 -25.10005 -23.83444 -22.92284 -22.12290 -20.78656 -19.31451 -18.99435 -17.96866 -17.13067 -16.33965 -16.04165 -15.55506 -15.47749 -14.58854 -14.35917 -14.26552 -13.63374 -13.40268 -13.20529 -12.81811 -12.59479 -12.33010 -11.84506 -11.62797 -11.55158 -11.32879 -11.15577 -10.99259 -10.80784 -10.57014 -10.50229 -10.33184 -10.08441 -9.85229 -8.99950 -8.58853 -8.22357 -7.94194 -7.77314 -6.44496 -4.03441 1.53876 1.74714 2.34107 2.79693 2.99868 3.10400 3.10743 3.76399 3.93728 4.39923 4.57298 4.70784 4.98106 5.36240 5.54231 5.72663 5.82886 5.92878 5.99102 6.36657 6.44172 6.59367 6.63576 6.66429 6.73854 6.82501 6.88406 7.00738 7.10425 7.19722 7.36334 7.40667 7.42747 7.66912 7.74170 8.31976 8.34840 8.92579 9.41290 9.82339 10.48863 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.007055 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.898188 B = 3968.059252 C = 5227.592640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.133 3.867 3 N -0.426 5.426 4 C -0.334 4.334 5 H 0.105 0.895 6 C 0.033 3.967 7 N -0.858 5.858 8 Si 0.922 3.078 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.272 1.272 12 C 0.486 3.514 13 O -0.605 6.605 14 C -0.071 4.071 15 C -0.089 4.089 16 C -0.120 4.120 17 C -0.114 4.114 18 C 0.128 3.872 19 N -0.643 5.643 20 C 0.664 3.336 21 O -0.566 6.566 22 O -0.525 6.525 23 C -0.093 4.093 24 H 0.086 0.914 25 H 0.034 0.966 26 H 0.024 0.976 27 H 0.103 0.897 28 H 0.035 0.965 29 H 0.270 0.730 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.418 0.582 34 H 0.429 0.571 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 9.862 -2.050 10.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.010 3.990 3 N -0.142 5.142 4 C -0.461 4.461 5 H 0.123 0.877 6 C -0.172 4.172 7 N -0.496 5.496 8 Si 0.748 3.252 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.197 1.197 12 C 0.275 3.725 13 O -0.493 6.493 14 C -0.075 4.075 15 C -0.109 4.109 16 C -0.139 4.139 17 C -0.134 4.134 18 C 0.036 3.964 19 N -0.295 5.295 20 C 0.416 3.584 21 O -0.455 6.455 22 O -0.335 6.335 23 C -0.114 4.114 24 H 0.104 0.896 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.120 0.880 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.151 0.849 33 H 0.255 0.745 34 H 0.289 0.711 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.860 9.299 -1.377 9.583 hybrid contribution 0.093 0.728 -1.304 1.496 sum 1.953 10.028 -2.681 10.562 Atomic orbital electron populations 1.21998 0.96728 0.99581 1.01473 1.21284 0.94418 0.82742 1.00536 1.43695 1.53588 1.11467 1.05422 1.19942 1.31328 1.11966 0.82913 0.87717 1.25327 0.95598 0.96732 0.99527 1.70056 1.27615 1.25007 1.26971 0.86075 0.79480 0.78909 0.80758 1.19758 1.20699 1.19712 1.17938 0.84424 0.85799 0.84370 1.90626 1.57717 1.69944 1.30982 1.19886 0.98516 0.94817 0.94271 1.21241 0.96861 0.94955 0.97821 1.20848 1.01238 0.93345 0.98457 1.21223 0.97279 1.00636 0.94276 1.17371 0.99453 0.89573 0.90003 1.41859 1.68057 1.07659 1.11936 1.17720 0.76472 0.82244 0.81940 1.91049 1.58556 1.73292 1.22618 1.84184 1.78896 1.28978 1.41441 1.21635 0.99372 0.90878 0.99478 0.89564 0.94679 0.95655 0.87951 0.94632 0.91875 0.85539 0.85833 0.84865 0.74483 0.71125 0.82647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.63 37.15 0.36 -2.83 16 2 C 0.13 3.19 5.26 -4.05 -0.02 3.17 16 3 N -0.43 -10.47 2.64 -115.93 -0.31 -10.77 16 4 C -0.33 -7.83 7.30 -15.00 -0.11 -7.94 16 5 H 0.11 2.34 5.34 -52.49 -0.28 2.06 16 6 C 0.03 0.75 5.16 -17.45 -0.09 0.66 16 7 N -0.86 -20.28 8.04 55.50 0.45 -19.84 16 8 Si 0.92 17.82 29.57 -169.99 -5.03 12.79 16 9 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 10 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 11 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 12 C 0.49 11.97 7.29 -12.38 -0.09 11.88 16 13 O -0.60 -16.37 16.47 5.28 0.09 -16.29 16 14 C -0.07 -1.51 5.33 -104.99 -0.56 -2.07 16 15 C -0.09 -1.66 9.61 -39.14 -0.38 -2.04 16 16 C -0.12 -1.93 10.02 -39.68 -0.40 -2.33 16 17 C -0.11 -1.89 8.69 -39.30 -0.34 -2.23 16 18 C 0.13 2.18 6.28 -83.73 -0.53 1.66 16 19 N -0.64 -9.31 5.34 -14.30 -0.08 -9.38 16 20 C 0.66 9.30 8.96 54.05 0.48 9.79 16 21 O -0.57 -9.46 14.60 -19.28 -0.28 -9.75 16 22 O -0.53 -5.31 13.48 -40.34 -0.54 -5.86 16 23 C -0.09 -1.79 7.42 -38.96 -0.29 -2.08 16 24 H 0.09 2.08 6.23 -51.93 -0.32 1.75 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.10 2.52 5.87 -51.93 -0.30 2.21 16 28 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 29 H 0.27 6.11 8.31 -40.82 -0.34 5.77 16 30 H 0.13 2.30 7.99 -52.49 -0.42 1.88 16 31 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 32 H 0.13 2.15 6.26 -52.48 -0.33 1.82 16 33 H 0.42 5.25 8.93 -40.82 -0.36 4.88 16 34 H 0.43 2.24 9.11 45.56 0.42 2.65 16 35 H 0.16 3.12 6.06 -52.49 -0.32 2.80 16 LS Contribution 298.41 15.07 4.50 4.50 Total: -1.00 -29.82 298.41 -5.88 -35.70 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -2.72 Total: 13.25 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -1.96 Total: 5.65 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.06 Total: -39.99 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.74 Total: -31.89 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.82 -5.88 -35.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737067867.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.783 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds