Wall clock time and date at job start Tue Mar 31 2020 01:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47480 * 2 1 4 4 C 1.36871 * 119.99885 * 262.93054 * 3 2 1 5 5 H 1.07999 * 120.00143 * 196.36345 * 4 3 2 6 6 C 1.39050 * 119.99957 * 16.36851 * 4 3 2 7 7 N 1.31362 * 120.00314 * 10.44585 * 6 4 3 8 8 Si 1.86806 * 119.99823 * 190.45091 * 6 4 3 9 9 H 1.48498 * 109.47312 * 59.99910 * 8 6 4 10 10 H 1.48505 * 109.46980 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47067 * 299.99363 * 8 6 4 12 12 C 1.34765 * 120.00002 * 82.93290 * 3 2 1 13 13 O 1.21593 * 120.00459 * 5.57498 * 12 3 2 14 14 C 1.47741 * 120.00134 * 185.57924 * 12 3 2 15 15 C 1.39696 * 120.11763 * 214.31117 * 14 12 3 16 16 C 1.37951 * 119.98486 * 179.97438 * 15 14 12 17 17 C 1.38268 * 120.23235 * 0.06375 * 16 15 14 18 18 C 1.38957 * 120.23827 * 359.97438 * 17 16 15 19 19 N 1.39980 * 119.99743 * 180.02562 * 18 17 16 20 20 C 1.34774 * 120.00171 * 324.32012 * 19 18 17 21 21 O 1.21516 * 120.00190 * 4.35832 * 20 19 18 22 22 O 1.34644 * 120.00472 * 184.35984 * 20 19 18 23 23 C 1.38605 * 120.00717 * 359.97438 * 18 17 16 24 24 H 1.08998 * 109.47095 * 59.99831 * 1 2 3 25 25 H 1.09005 * 109.47589 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46998 * 299.99937 * 1 2 3 27 27 H 1.09007 * 109.47051 * 239.99476 * 2 1 3 28 28 H 1.09001 * 109.47513 * 120.00432 * 2 1 3 29 29 H 0.97001 * 120.00202 * 179.97438 * 7 6 4 30 30 H 1.07997 * 120.00677 * 0.03736 * 15 14 12 31 31 H 1.08006 * 119.88066 * 180.02562 * 16 15 14 32 32 H 1.08009 * 119.88240 * 179.97438 * 17 16 15 33 33 H 0.96998 * 120.00008 * 144.32380 * 19 18 17 34 34 H 0.96695 * 117.00751 * 179.97438 * 22 20 19 35 35 H 1.08001 * 120.11594 * 179.74736 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3840 1.9777 -1.1763 5 1 2.9819 2.8770 -1.1628 6 6 1.9857 1.4259 -2.3889 7 7 1.0956 0.4601 -2.4103 8 14 2.7165 2.0581 -3.9877 9 1 4.1884 1.8623 -3.9707 10 1 2.1312 1.3101 -5.1293 11 1 2.4110 3.5040 -4.1339 12 6 2.1076 2.0643 1.1582 13 8 1.8803 1.5045 2.2134 14 6 2.4817 3.4935 1.1460 15 6 3.2468 4.0268 2.1860 16 6 3.5950 5.3616 2.1715 17 6 3.1881 6.1759 1.1308 18 6 2.4261 5.6556 0.0918 19 7 2.0174 6.4845 -0.9595 20 6 1.6921 7.7697 -0.7170 21 8 1.8289 8.2310 0.3988 22 8 1.2154 8.5426 -1.7111 23 6 2.0716 4.3156 0.0958 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.8175 0.0754 -3.2562 30 1 3.5666 3.3940 3.0007 31 1 4.1870 5.7720 2.9763 32 1 3.4636 7.2203 1.1254 33 1 1.9683 6.1339 -1.8626 34 1 0.9955 9.4577 -1.4889 35 1 1.4759 3.9103 -0.7087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737067867.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:45 Heat of formation + Delta-G solvation = -90.268411 kcal Electronic energy + Delta-G solvation = -21790.846354 eV Core-core repulsion = 18368.054675 eV Total energy + Delta-G solvation = -3422.791679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.87489 -40.88889 -39.30462 -37.20497 -36.96247 -35.88129 -33.48899 -32.79621 -30.88422 -30.57515 -26.91172 -25.34979 -24.26694 -23.66988 -22.25283 -21.02862 -20.10111 -19.52855 -18.33370 -17.91893 -17.35549 -17.00451 -16.83590 -16.24222 -16.05815 -15.84374 -14.99738 -14.84286 -14.63432 -14.42447 -14.34357 -13.91875 -13.42408 -13.15614 -12.95069 -12.82007 -12.64206 -12.60323 -12.42240 -12.16790 -12.03999 -11.71632 -11.70401 -11.42655 -10.84811 -10.42111 -9.74276 -9.71456 -9.20305 -8.21715 -5.87757 0.09031 0.36097 1.28743 1.46548 1.52874 1.60620 1.67644 2.10287 2.30006 2.84710 2.97629 3.22105 3.57319 4.02555 4.09310 4.30719 4.40856 4.53989 4.58049 4.61135 4.83335 4.93589 5.01515 5.13605 5.27492 5.28634 5.38147 5.44924 5.49343 5.64979 5.75080 5.80308 5.84201 6.04057 6.28681 6.50784 7.10658 7.32327 7.55436 7.96801 8.72438 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.007055 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.898188 B = 3968.059252 C = 5227.592640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.132 3.868 3 N -0.433 5.433 4 C -0.351 4.351 5 H 0.115 0.885 6 C -0.002 4.002 7 N -0.879 5.879 8 Si 0.985 3.015 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.252 1.252 12 C 0.469 3.531 13 O -0.643 6.643 14 C -0.098 4.098 15 C -0.098 4.098 16 C -0.104 4.104 17 C -0.109 4.109 18 C 0.136 3.864 19 N -0.641 5.641 20 C 0.670 3.330 21 O -0.594 6.594 22 O -0.510 6.510 23 C -0.098 4.098 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.009 0.991 27 H 0.097 0.903 28 H 0.025 0.975 29 H 0.273 0.727 30 H 0.125 0.875 31 H 0.161 0.839 32 H 0.146 0.854 33 H 0.428 0.572 34 H 0.451 0.549 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 12.182 -3.292 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.010 3.990 3 N -0.148 5.148 4 C -0.478 4.478 5 H 0.132 0.868 6 C -0.205 4.205 7 N -0.517 5.517 8 Si 0.808 3.192 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.176 1.176 12 C 0.260 3.740 13 O -0.534 6.534 14 C -0.101 4.101 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.130 4.130 18 C 0.043 3.957 19 N -0.294 5.294 20 C 0.423 3.577 21 O -0.485 6.485 22 O -0.323 6.323 23 C -0.119 4.119 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.029 0.971 27 H 0.115 0.885 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.143 0.857 31 H 0.179 0.821 32 H 0.164 0.836 33 H 0.266 0.734 34 H 0.315 0.685 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.495 11.661 -2.658 12.218 hybrid contribution -0.141 0.064 -0.946 0.958 sum 2.354 11.726 -3.604 12.491 Atomic orbital electron populations 1.21833 0.95843 1.00564 0.99979 1.21257 0.95125 0.83061 0.99590 1.43911 1.53279 1.11501 1.06090 1.20252 1.32079 1.12707 0.82801 0.86806 1.26121 0.95490 0.96699 1.02154 1.70143 1.28129 1.25650 1.27796 0.85098 0.78218 0.79416 0.76470 1.19988 1.21005 1.17551 1.18549 0.84282 0.87334 0.83810 1.90569 1.59555 1.71205 1.32096 1.19741 1.00904 0.93105 0.96384 1.21324 0.97018 0.96239 0.97194 1.21178 1.00141 0.91862 0.99001 1.21471 0.96441 1.01154 0.93922 1.17323 0.98686 0.88993 0.90667 1.41774 1.67999 1.07860 1.11789 1.17670 0.75916 0.82085 0.82009 1.91035 1.59666 1.73820 1.23949 1.84169 1.77968 1.30374 1.39752 1.21385 0.99857 0.91799 0.98843 0.90702 0.92513 0.97144 0.88495 0.95683 0.91709 0.85721 0.82111 0.83629 0.73382 0.68522 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 9.63 71.98 0.69 -5.11 16 2 C 0.13 6.58 5.26 86.38 0.45 7.03 16 3 N -0.43 -21.91 2.64 -638.94 -1.68 -23.60 16 4 C -0.35 -16.62 7.30 84.10 0.61 -16.01 16 5 H 0.11 5.08 5.34 -2.91 -0.02 5.06 16 6 C 0.00 -0.09 5.16 84.96 0.44 0.35 16 7 N -0.88 -41.64 8.04 21.68 0.17 -41.47 16 8 Si 0.98 35.48 29.57 68.60 2.03 37.51 16 9 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 10 H -0.28 -10.35 7.11 99.48 0.71 -9.64 16 11 H -0.25 -8.20 7.11 99.48 0.71 -7.50 16 12 C 0.47 23.97 7.29 86.76 0.63 24.60 16 13 O -0.64 -36.32 16.47 -4.01 -0.07 -36.38 16 14 C -0.10 -4.19 5.33 -20.10 -0.11 -4.30 16 15 C -0.10 -3.61 9.61 22.55 0.22 -3.39 16 16 C -0.10 -3.08 10.02 22.21 0.22 -2.85 16 17 C -0.11 -3.35 8.69 22.45 0.20 -3.15 16 18 C 0.14 4.41 6.28 38.10 0.24 4.65 16 19 N -0.64 -17.00 5.34 -429.57 -2.29 -19.29 16 20 C 0.67 16.83 8.96 129.79 1.16 18.00 16 21 O -0.59 -18.21 14.60 19.79 0.29 -17.92 16 22 O -0.51 -8.55 13.48 -55.53 -0.75 -9.30 16 23 C -0.10 -3.73 7.42 22.67 0.17 -3.56 16 24 H 0.07 3.67 6.23 -2.39 -0.01 3.66 16 25 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.10 4.89 5.87 -2.38 -0.01 4.88 16 28 H 0.02 1.26 7.57 -2.39 -0.02 1.24 16 29 H 0.27 12.25 8.31 -92.71 -0.77 11.48 16 30 H 0.12 4.56 7.99 -2.91 -0.02 4.53 16 31 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 32 H 0.15 4.19 6.26 -2.91 -0.02 4.17 16 33 H 0.43 9.64 8.93 -92.71 -0.83 8.81 16 34 H 0.45 3.04 9.11 -74.06 -0.67 2.37 16 35 H 0.14 5.76 6.06 -2.91 -0.02 5.75 16 Total: -1.00 -64.66 298.41 2.29 -62.37 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -0.34 Total: 31.83 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 4.93 Total: 16.25 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -3.80 Total: -84.36 kcal Atomic # 8 Polarization: -63.08 SS G_CDS: -0.53 Total: -63.60 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Total: -64.66 2.29 -62.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737067867.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.897 kcal (2) G-P(sol) polarization free energy of solvation -64.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds