Wall clock time and date at job start Mon Mar 30 2020 23:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46753 * 2 1 4 4 C 1.38628 * 120.47102 * 101.96869 * 3 2 1 5 5 C 1.38584 * 118.48784 * 180.02562 * 4 3 2 6 6 C 1.38623 * 119.35930 * 359.97438 * 5 4 3 7 7 N 1.31477 * 120.90680 * 359.97438 * 6 5 4 8 8 C 1.32778 * 121.63692 * 0.02562 * 7 6 5 9 9 C 1.48070 * 119.72559 * 179.97438 * 8 7 6 10 10 O 1.21425 * 120.00197 * 174.76130 * 9 8 7 11 11 O 1.34682 * 119.99686 * 354.75991 * 9 8 7 12 12 C 1.45197 * 116.99878 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47279 * 179.97438 * 12 11 9 14 14 O 1.21289 * 119.99952 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99928 * 180.02562 * 13 12 11 16 16 C 1.37091 * 119.99788 * 180.02562 * 15 13 12 17 17 H 1.08003 * 120.00366 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00103 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00221 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00039 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46853 * 90.00092 * 20 18 16 22 22 H 1.48503 * 109.47343 * 210.00317 * 20 18 16 23 23 H 1.48500 * 109.47020 * 330.00803 * 20 18 16 24 24 H 1.09000 * 109.46593 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47178 * 299.99908 * 1 2 3 26 26 H 1.08996 * 109.47149 * 60.00626 * 1 2 3 27 27 H 1.08990 * 109.47483 * 239.99545 * 2 1 3 28 28 H 1.09004 * 109.46924 * 119.99614 * 2 1 3 29 29 H 1.07998 * 120.75752 * 0.03627 * 4 3 2 30 30 H 1.08001 * 120.31816 * 180.02562 * 5 4 3 31 31 H 1.08004 * 119.54784 * 180.28211 * 6 5 4 32 32 H 1.09000 * 109.47522 * 300.00359 * 12 11 9 33 33 H 1.09010 * 109.46797 * 60.00228 * 12 11 9 34 34 H 0.97000 * 119.99873 * 359.97438 * 15 13 12 35 35 H 0.96997 * 120.00031 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.5002 2.0011 1.1688 5 6 2.9519 3.3104 1.1220 6 6 2.9237 3.9965 -0.0822 7 7 2.4756 3.4217 -1.1765 8 6 2.0339 2.1695 -1.1748 9 6 1.5380 1.5642 -2.4318 10 8 1.2224 0.3920 -2.4580 11 8 1.4369 2.3139 -3.5461 12 6 0.9437 1.6543 -4.7419 13 6 0.8987 2.6427 -5.8786 14 8 1.2484 3.7901 -5.6987 15 7 0.4698 2.2517 -7.0950 16 6 0.4294 3.1507 -8.1292 17 1 0.7408 4.1724 -7.9691 18 6 -0.0132 2.7478 -9.3831 19 7 -0.0525 3.6097 -10.3743 20 14 -0.5525 0.9809 -9.6600 21 1 -2.0060 0.8576 -9.3816 22 1 -0.2840 0.5963 -11.0690 23 1 0.2036 0.0841 -8.7494 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 2.5126 1.4454 2.0948 30 1 3.3231 3.7913 2.0150 31 1 3.2792 5.0155 -0.1231 32 1 1.6078 0.8302 -5.0025 33 1 -0.0588 1.2683 -4.5566 34 1 0.1905 1.3340 -7.2389 35 1 -0.3611 3.3283 -11.2498 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767058325.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:54 Heat of formation + Delta-G solvation = -75.109682 kcal Electronic energy + Delta-G solvation = -20803.036954 eV Core-core repulsion = 17380.902607 eV Total energy + Delta-G solvation = -3422.134347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12572 -39.68456 -38.24684 -36.45298 -34.60366 -34.00043 -32.58857 -31.74932 -30.22556 -28.59606 -25.52245 -24.42294 -24.21177 -21.90949 -21.22128 -19.59163 -18.57326 -18.29507 -17.09875 -16.52193 -16.39556 -16.03254 -15.57669 -15.00224 -14.71986 -14.46395 -14.10767 -13.77708 -13.57593 -13.48888 -13.09612 -12.85980 -12.43768 -12.35883 -12.18011 -12.10418 -11.65890 -11.35211 -11.21180 -10.61767 -10.46447 -10.31055 -10.11559 -10.00992 -9.67360 -9.62871 -9.30868 -8.60052 -8.24442 -6.34805 -3.87423 0.30444 0.93064 2.34925 2.51407 3.01778 3.06204 3.14592 3.56285 3.62177 3.95224 4.07622 4.33212 4.41837 4.52663 4.61279 4.79881 5.00227 5.13719 5.15171 5.19412 5.22731 5.35323 5.53086 5.58164 5.66683 5.72612 5.72829 5.80014 6.02259 6.13057 6.24678 6.54772 7.44281 7.52471 7.85592 8.05940 8.53134 8.88788 9.34704 9.71545 10.77686 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030999 B = 0.003714 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.052470 B = 7537.530486 C = 8325.452220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 C -0.066 4.066 4 C -0.088 4.088 5 C -0.140 4.140 6 C 0.090 3.910 7 N -0.423 5.423 8 C 0.093 3.907 9 C 0.518 3.482 10 O -0.497 6.497 11 O -0.299 6.299 12 C 0.055 3.945 13 C 0.449 3.551 14 O -0.551 6.551 15 N -0.581 5.581 16 C -0.307 4.307 17 H 0.122 0.878 18 C 0.044 3.956 19 N -0.877 5.877 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.268 1.268 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.373 0.627 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 -8.178 23.703 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 C -0.069 4.069 4 C -0.114 4.114 5 C -0.159 4.159 6 C -0.070 4.070 7 N -0.133 5.133 8 C -0.044 4.044 9 C 0.361 3.639 10 O -0.386 6.386 11 O -0.212 6.212 12 C -0.023 4.023 13 C 0.234 3.766 14 O -0.432 6.432 15 N -0.222 5.222 16 C -0.435 4.435 17 H 0.140 0.860 18 C -0.159 4.159 19 N -0.516 5.516 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.194 1.194 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.124 0.876 28 H 0.087 0.913 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.184 0.816 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.206 0.794 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.502 -7.228 22.709 24.088 hybrid contribution -0.441 -1.833 0.338 1.916 sum 3.061 -9.061 23.047 24.953 Atomic orbital electron populations 1.21646 0.93983 1.02206 1.01697 1.20840 0.97062 0.90812 1.04276 1.20934 0.95907 0.97859 0.92190 1.21515 0.96937 0.95157 0.97803 1.22492 0.98376 0.95126 0.99945 1.22953 0.96136 1.00571 0.87363 1.67757 1.05919 1.09004 1.30607 1.19910 1.01980 0.91404 0.91059 1.20856 0.75019 0.84179 0.83860 1.90773 1.46233 1.16441 1.85195 1.86751 1.75432 1.41417 1.17566 1.22829 1.00598 0.95671 0.83194 1.19175 0.85289 0.88953 0.83228 1.90628 1.50877 1.19235 1.82457 1.42021 1.59375 1.11854 1.08941 1.19430 1.42003 0.95127 0.86934 0.86016 1.25027 0.97431 0.98231 0.95240 1.69615 1.45695 1.34396 1.01910 0.86679 0.79676 0.84228 0.78911 1.19445 1.20002 1.19358 0.91957 0.93343 0.92161 0.87551 0.91252 0.83871 0.83944 0.81641 0.89272 0.89293 0.79438 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.41 37.16 0.35 -1.03 16 2 C -0.09 -0.91 5.36 -27.88 -0.15 -1.06 16 3 C -0.07 -0.74 5.19 -104.08 -0.54 -1.28 16 4 C -0.09 -0.71 9.81 -39.31 -0.39 -1.10 16 5 C -0.14 -1.06 10.11 -39.31 -0.40 -1.45 16 6 C 0.09 0.94 11.18 -17.56 -0.20 0.74 16 7 N -0.42 -6.33 10.12 -9.81 -0.10 -6.43 16 8 C 0.09 1.35 6.74 -83.03 -0.56 0.79 16 9 C 0.52 8.60 7.52 34.76 0.26 8.86 16 10 O -0.50 -7.89 11.57 -19.21 -0.22 -8.11 16 11 O -0.30 -5.88 9.58 -47.12 -0.45 -6.33 16 12 C 0.05 1.02 5.95 36.01 0.21 1.23 16 13 C 0.45 10.75 7.86 -10.98 -0.09 10.66 16 14 O -0.55 -15.76 16.08 -14.11 -0.23 -15.98 16 15 N -0.58 -14.09 5.09 -10.96 -0.06 -14.14 16 16 C -0.31 -8.73 10.16 -14.94 -0.15 -8.89 16 17 H 0.12 3.95 7.39 -52.48 -0.39 3.56 16 18 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 19 N -0.88 -25.53 13.96 55.50 0.77 -24.75 16 20 Si 0.88 19.27 27.74 -169.99 -4.71 14.56 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 23 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 27 H 0.11 1.24 5.92 -51.93 -0.31 0.93 16 28 H 0.07 0.50 8.02 -51.93 -0.42 0.09 16 29 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 30 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.09 1.43 8.14 -51.92 -0.42 1.00 16 34 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 308.23 15.07 4.64 4.64 Total: -1.00 -35.01 308.23 -5.90 -40.91 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -3.81 Total: 7.03 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -1.74 Total: 8.61 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.62 Total: -45.33 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.90 Total: -30.42 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.56 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.01 -5.90 -40.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767058325.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.202 kcal (2) G-P(sol) polarization free energy of solvation -35.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds