Wall clock time and date at job start Tue Mar 31 2020 01:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29415 * 120.00166 * 2 1 4 4 O 1.41601 * 119.99880 * 0.02562 * 3 2 1 5 5 C 1.42899 * 114.00318 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47204 * 179.97438 * 5 4 3 7 7 N 1.34781 * 119.99948 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00288 * 0.02562 * 6 5 4 9 9 C 1.47495 * 120.00194 * 179.97438 * 2 1 3 10 10 C 1.39753 * 120.08034 * 180.02562 * 9 2 1 11 11 C 1.37718 * 119.91792 * 180.02562 * 10 9 2 12 12 C 1.39071 * 120.08557 * 359.97438 * 11 10 9 13 13 O 1.35635 * 119.92472 * 180.02562 * 12 11 10 14 14 C 1.34810 * 117.00114 * 5.55101 * 13 12 11 15 15 H 1.08005 * 119.99407 * 354.94821 * 14 13 12 16 16 C 1.38660 * 120.00405 * 174.94588 * 14 13 12 17 17 N 1.31549 * 120.00099 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00353 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46732 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46937 * 119.99799 * 18 16 14 21 21 H 1.48494 * 109.46959 * 239.99637 * 18 16 14 22 22 C 1.39077 * 120.15629 * 0.27498 * 12 11 10 23 23 C 1.37722 * 120.08376 * 359.45146 * 22 12 11 24 24 H 1.09003 * 109.47134 * 269.99542 * 1 2 3 25 25 H 1.08992 * 109.47471 * 29.99997 * 1 2 3 26 26 H 1.09005 * 109.47057 * 150.00126 * 1 2 3 27 27 H 1.08997 * 109.47243 * 299.99655 * 5 4 3 28 28 H 1.09002 * 109.47163 * 59.99839 * 5 4 3 29 29 H 0.96993 * 119.99789 * 0.02562 * 7 6 5 30 30 H 0.97003 * 119.99871 * 180.02562 * 7 6 5 31 31 H 1.08005 * 120.04032 * 0.02562 * 10 9 2 32 32 H 1.08001 * 119.95850 * 179.97438 * 11 10 9 33 33 H 0.96997 * 120.00558 * 179.97438 * 17 16 14 34 34 H 1.08003 * 119.95831 * 179.70147 * 22 12 11 35 35 H 1.08002 * 120.04690 * 180.25049 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1540 1.1207 0.0000 4 8 1.4460 2.3471 0.0005 5 6 2.2859 3.5032 0.0011 6 6 1.4317 4.7447 0.0010 7 7 2.0113 5.9615 0.0019 8 8 0.2227 4.6489 0.0010 9 6 2.2445 -1.2773 0.0006 10 6 3.6420 -1.2792 0.0011 11 6 4.3272 -2.4738 0.0011 12 6 3.6303 -3.6773 0.0011 13 8 4.3085 -4.8519 0.0016 14 6 5.6498 -4.7842 0.1183 15 1 6.1435 -3.8236 0.1238 16 6 6.3956 -5.9477 0.2314 17 7 5.7943 -7.1177 0.2253 18 14 8.2542 -5.8537 0.3938 19 1 8.6813 -4.4316 0.3759 20 1 8.6714 -6.4793 1.6744 21 1 8.8872 -6.5756 -0.7390 22 6 2.2395 -3.6793 -0.0047 23 6 1.5475 -2.4886 0.0010 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 2.9151 3.4948 0.8910 28 1 2.9152 3.4955 -0.8889 29 1 2.9782 6.0381 0.0023 30 1 1.4614 6.7606 0.0023 31 1 4.1839 -0.3450 0.0015 32 1 5.4072 -2.4761 0.0011 33 1 6.3160 -7.9316 0.3040 34 1 1.7015 -4.6158 -0.0095 35 1 0.4674 -2.4909 0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771575816.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:45 Heat of formation + Delta-G solvation = -28.819446 kcal Electronic energy + Delta-G solvation = -20007.069213 eV Core-core repulsion = 16586.942161 eV Total energy + Delta-G solvation = -3420.127052 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.67850 -39.21632 -37.61679 -36.53923 -34.21060 -33.98643 -32.39482 -30.52654 -29.28850 -27.97046 -27.21737 -25.50076 -22.28807 -21.85327 -21.04130 -19.47123 -18.09491 -17.88152 -17.21469 -16.90824 -16.10069 -15.90631 -15.47106 -14.68623 -14.42609 -14.30631 -14.15664 -13.88725 -13.77922 -13.34460 -13.22807 -12.91456 -12.57238 -12.00724 -11.79621 -11.64428 -11.29037 -11.11179 -10.98653 -10.75273 -10.51966 -10.27260 -10.06197 -9.66039 -9.46061 -9.37535 -8.87598 -8.33667 -7.22742 -6.61499 -4.17735 1.45099 2.16120 2.31820 2.42014 2.87814 3.06218 3.09235 3.12379 3.63961 3.84784 4.50970 4.61555 4.84469 4.96056 5.08034 5.11007 5.13651 5.31383 5.48557 5.62607 5.68514 5.75556 6.04065 6.12884 6.29747 6.35819 6.46589 6.56566 6.79155 6.92001 6.94420 7.12791 7.20492 7.29092 7.64450 7.83521 7.85212 7.93044 8.83668 9.50465 10.55398 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029764 B = 0.002996 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.504769 B = 9344.737488 C =10260.934855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.214 3.786 3 N -0.373 5.373 4 O -0.230 6.230 5 C 0.060 3.940 6 C 0.521 3.479 7 N -0.853 5.853 8 O -0.526 6.526 9 C -0.170 4.170 10 C -0.022 4.022 11 C -0.244 4.244 12 C 0.169 3.831 13 O -0.165 6.165 14 C -0.392 4.392 15 H 0.097 0.903 16 C 0.041 3.959 17 N -0.854 5.854 18 Si 0.944 3.056 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.197 4.197 23 C -0.038 4.038 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.403 0.597 30 H 0.405 0.595 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.273 0.727 34 H 0.123 0.877 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.395 17.684 -0.203 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.029 3.971 3 N -0.126 5.126 4 O -0.239 6.239 5 C -0.020 4.020 6 C 0.304 3.696 7 N -0.420 5.420 8 O -0.401 6.401 9 C -0.173 4.173 10 C -0.042 4.042 11 C -0.264 4.264 12 C 0.113 3.887 13 O -0.066 6.066 14 C -0.468 4.468 15 H 0.115 0.885 16 C -0.165 4.165 17 N -0.487 5.487 18 Si 0.768 3.232 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.217 4.217 23 C -0.058 4.058 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.232 0.768 30 H 0.237 0.763 31 H 0.136 0.864 32 H 0.149 0.851 33 H 0.083 0.917 34 H 0.141 0.859 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.554 17.415 -0.207 17.775 hybrid contribution 0.676 0.435 0.086 0.808 sum -2.878 17.849 -0.121 18.080 Atomic orbital electron populations 1.21309 0.92224 1.03861 1.03543 1.23261 0.94102 0.90840 0.88927 1.76878 1.22901 0.90618 1.22192 1.89841 1.29119 1.10658 1.94321 1.21861 0.93067 0.83678 1.03436 1.20359 0.88717 0.85054 0.75513 1.43668 1.11745 1.07633 1.78912 1.90780 1.14648 1.86917 1.47737 1.17686 0.92716 0.88736 1.18187 1.20925 0.92699 0.97280 0.93256 1.21113 1.00829 0.91737 1.12680 1.19581 0.91721 0.86383 0.91047 1.83931 1.21327 1.25293 1.76018 1.21497 0.78315 0.95034 1.51950 0.88532 1.25375 1.00898 0.94107 0.96101 1.70038 1.36636 0.97640 1.44395 0.85592 0.80079 0.79061 0.78428 1.18887 1.19970 1.19975 1.20113 0.91391 0.98069 1.12101 1.20738 0.98632 0.90585 0.95866 0.90048 0.90488 0.90220 0.89707 0.89732 0.76849 0.76319 0.86384 0.85106 0.91727 0.85869 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.27 36.00 0.33 -1.70 16 2 C 0.21 3.47 7.11 -79.84 -0.57 2.91 16 3 N -0.37 -6.20 10.46 35.07 0.37 -5.84 16 4 O -0.23 -3.67 9.68 -31.38 -0.30 -3.97 16 5 C 0.06 0.68 6.88 36.01 0.25 0.93 16 6 C 0.52 5.79 8.18 -10.98 -0.09 5.71 16 7 N -0.85 -5.02 8.87 31.22 0.28 -4.74 16 8 O -0.53 -8.47 17.34 -14.35 -0.25 -8.72 16 9 C -0.17 -2.98 5.87 -104.99 -0.62 -3.60 16 10 C -0.02 -0.40 9.57 -39.21 -0.38 -0.77 16 11 C -0.24 -5.09 9.15 -39.46 -0.36 -5.45 16 12 C 0.17 3.87 6.65 -38.96 -0.26 3.61 16 13 O -0.16 -4.46 9.75 0.46 0.00 -4.45 16 14 C -0.39 -10.41 9.48 30.89 0.29 -10.12 16 15 H 0.10 2.36 5.19 -52.48 -0.27 2.09 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 17 N -0.85 -23.93 13.67 55.48 0.76 -23.17 16 18 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 16 19 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 C -0.20 -3.88 9.97 -39.46 -0.39 -4.27 16 23 C -0.04 -0.64 9.35 -39.20 -0.37 -1.01 16 24 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.08 1.09 7.35 -51.93 -0.38 0.71 16 26 H 0.08 0.92 6.47 -51.93 -0.34 0.58 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.40 1.06 8.83 -40.82 -0.36 0.69 16 30 H 0.41 1.94 8.93 -40.82 -0.36 1.58 16 31 H 0.12 2.01 7.55 -52.48 -0.40 1.61 16 32 H 0.13 2.71 5.62 -52.49 -0.29 2.41 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 35 H 0.12 1.62 6.35 -52.49 -0.33 1.29 16 LS Contribution 314.70 15.07 4.74 4.74 Total: -1.00 -33.53 314.70 -5.24 -38.77 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -3.56 Total: 5.64 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.25 Total: -12.79 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 1.40 Total: -33.75 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.55 Total: -17.15 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.53 -5.24 -38.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771575816.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.952 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds