Wall clock time and date at job start Tue Mar 31 2020 01:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29415 * 120.00166 * 2 1 4 4 O 1.41601 * 119.99880 * 0.02562 * 3 2 1 5 5 C 1.42899 * 114.00318 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47204 * 179.97438 * 5 4 3 7 7 N 1.34781 * 119.99948 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00288 * 0.02562 * 6 5 4 9 9 C 1.47495 * 120.00194 * 179.97438 * 2 1 3 10 10 C 1.39753 * 120.08034 * 180.02562 * 9 2 1 11 11 C 1.37718 * 119.91792 * 180.02562 * 10 9 2 12 12 C 1.39071 * 120.08557 * 359.97438 * 11 10 9 13 13 O 1.35635 * 119.92472 * 180.02562 * 12 11 10 14 14 C 1.34810 * 117.00114 * 5.55101 * 13 12 11 15 15 H 1.08005 * 119.99407 * 354.94821 * 14 13 12 16 16 C 1.38660 * 120.00405 * 174.94588 * 14 13 12 17 17 N 1.31549 * 120.00099 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00353 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46732 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46937 * 119.99799 * 18 16 14 21 21 H 1.48494 * 109.46959 * 239.99637 * 18 16 14 22 22 C 1.39077 * 120.15629 * 0.27498 * 12 11 10 23 23 C 1.37722 * 120.08376 * 359.45146 * 22 12 11 24 24 H 1.09003 * 109.47134 * 269.99542 * 1 2 3 25 25 H 1.08992 * 109.47471 * 29.99997 * 1 2 3 26 26 H 1.09005 * 109.47057 * 150.00126 * 1 2 3 27 27 H 1.08997 * 109.47243 * 299.99655 * 5 4 3 28 28 H 1.09002 * 109.47163 * 59.99839 * 5 4 3 29 29 H 0.96993 * 119.99789 * 0.02562 * 7 6 5 30 30 H 0.97003 * 119.99871 * 180.02562 * 7 6 5 31 31 H 1.08005 * 120.04032 * 0.02562 * 10 9 2 32 32 H 1.08001 * 119.95850 * 179.97438 * 11 10 9 33 33 H 0.96997 * 120.00558 * 179.97438 * 17 16 14 34 34 H 1.08003 * 119.95831 * 179.70147 * 22 12 11 35 35 H 1.08002 * 120.04690 * 180.25049 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1540 1.1207 0.0000 4 8 1.4460 2.3471 0.0005 5 6 2.2859 3.5032 0.0011 6 6 1.4317 4.7447 0.0010 7 7 2.0113 5.9615 0.0019 8 8 0.2227 4.6489 0.0010 9 6 2.2445 -1.2773 0.0006 10 6 3.6420 -1.2792 0.0011 11 6 4.3272 -2.4738 0.0011 12 6 3.6303 -3.6773 0.0011 13 8 4.3085 -4.8519 0.0016 14 6 5.6498 -4.7842 0.1183 15 1 6.1435 -3.8236 0.1238 16 6 6.3956 -5.9477 0.2314 17 7 5.7943 -7.1177 0.2253 18 14 8.2542 -5.8537 0.3938 19 1 8.6813 -4.4316 0.3759 20 1 8.6714 -6.4793 1.6744 21 1 8.8872 -6.5756 -0.7390 22 6 2.2395 -3.6793 -0.0047 23 6 1.5475 -2.4886 0.0010 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 2.9151 3.4948 0.8910 28 1 2.9152 3.4955 -0.8889 29 1 2.9782 6.0381 0.0023 30 1 1.4614 6.7606 0.0023 31 1 4.1839 -0.3450 0.0015 32 1 5.4072 -2.4761 0.0011 33 1 6.3160 -7.9316 0.3040 34 1 1.7015 -4.6158 -0.0095 35 1 0.4674 -2.4909 0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771575816.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:45 Heat of formation + Delta-G solvation = -53.258071 kcal Electronic energy + Delta-G solvation = -20008.128952 eV Core-core repulsion = 16586.942161 eV Total energy + Delta-G solvation = -3421.186790 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86947 -40.57937 -39.04109 -37.92862 -35.52527 -34.76889 -34.23863 -32.05042 -30.63966 -29.23416 -28.31168 -27.33057 -23.79747 -23.42349 -21.87501 -20.86778 -19.79847 -18.87736 -18.57560 -18.09245 -17.05652 -17.03277 -16.71623 -16.25607 -16.06061 -15.63495 -15.48429 -15.32563 -15.16885 -14.56303 -14.39454 -14.30683 -14.12124 -13.55161 -13.21729 -13.08985 -12.68449 -12.59274 -12.31412 -12.28819 -12.08691 -11.36872 -11.17649 -10.95664 -10.76742 -10.73224 -10.48715 -9.86256 -8.85602 -8.50097 -6.16822 0.01384 0.60265 1.37650 1.37810 1.39489 1.46824 1.55402 1.56530 2.17028 2.79049 2.84898 3.17225 3.42884 3.61917 3.90614 4.05610 4.12128 4.22686 4.26407 4.31674 4.49001 4.54024 4.67677 4.73388 4.95234 5.06177 5.14387 5.24081 5.28848 5.59567 5.62568 5.67150 5.83263 5.99660 6.07989 6.34608 6.58604 6.94657 7.24063 7.70932 8.72170 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029764 B = 0.002996 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.504769 B = 9344.737488 C =10260.934855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.203 3.797 3 N -0.376 5.376 4 O -0.246 6.246 5 C 0.051 3.949 6 C 0.523 3.477 7 N -0.824 5.824 8 O -0.584 6.584 9 C -0.150 4.150 10 C -0.025 4.025 11 C -0.249 4.249 12 C 0.137 3.863 13 O -0.218 6.218 14 C -0.415 4.415 15 H 0.106 0.894 16 C -0.018 4.018 17 N -0.914 5.914 18 Si 1.018 2.982 19 H -0.250 1.250 20 H -0.269 1.269 21 H -0.269 1.269 22 C -0.203 4.203 23 C -0.023 4.023 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.422 0.578 30 H 0.415 0.585 31 H 0.135 0.865 32 H 0.125 0.875 33 H 0.275 0.725 34 H 0.129 0.871 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 20.731 -0.126 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 N -0.127 5.127 4 O -0.258 6.258 5 C -0.029 4.029 6 C 0.306 3.694 7 N -0.391 5.391 8 O -0.463 6.463 9 C -0.152 4.152 10 C -0.045 4.045 11 C -0.268 4.268 12 C 0.084 3.916 13 O -0.123 6.123 14 C -0.491 4.491 15 H 0.123 0.877 16 C -0.217 4.217 17 N -0.551 5.551 18 Si 0.837 3.163 19 H -0.174 1.174 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.222 4.222 23 C -0.043 4.043 24 H 0.112 0.888 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.254 0.746 30 H 0.248 0.752 31 H 0.153 0.847 32 H 0.143 0.857 33 H 0.084 0.916 34 H 0.147 0.853 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.804 20.562 -0.134 20.911 hybrid contribution 0.516 -0.027 0.048 0.519 sum -3.288 20.534 -0.086 20.796 Atomic orbital electron populations 1.21329 0.89929 1.04632 1.04571 1.23294 0.95568 0.90073 0.89440 1.76740 1.23856 0.91379 1.20693 1.89838 1.30535 1.11106 1.94309 1.22197 0.93100 0.82189 1.05415 1.20397 0.87852 0.86184 0.74989 1.43434 1.13004 1.06331 1.76297 1.90764 1.16863 1.87738 1.50970 1.17990 0.92450 0.89947 1.14851 1.21111 0.93493 0.96949 0.92938 1.21166 1.00784 0.92057 1.12814 1.20140 0.93088 0.86250 0.92121 1.83915 1.21634 1.27230 1.79504 1.21923 0.78849 0.95744 1.52537 0.87696 1.26588 1.06069 0.93472 0.95580 1.70168 1.38676 0.98503 1.47745 0.84532 0.73504 0.79718 0.78516 1.17360 1.19401 1.19361 1.20409 0.90374 0.99709 1.11733 1.21140 1.00713 0.88959 0.93454 0.88792 0.91229 0.87957 0.87655 0.87680 0.74577 0.75235 0.84727 0.85719 0.91629 0.85279 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.27 71.23 0.66 -2.73 16 2 C 0.20 5.90 7.11 45.35 0.32 6.22 16 3 N -0.38 -11.37 10.46 -42.97 -0.45 -11.82 16 4 O -0.25 -7.23 9.68 -19.75 -0.19 -7.43 16 5 C 0.05 1.00 6.88 71.24 0.49 1.49 16 6 C 0.52 10.43 8.18 87.66 0.72 11.15 16 7 N -0.82 -7.18 8.87 -173.53 -1.54 -8.72 16 8 O -0.58 -18.13 17.34 16.00 0.28 -17.85 16 9 C -0.15 -4.82 5.87 -20.11 -0.12 -4.94 16 10 C -0.03 -0.89 9.57 22.51 0.22 -0.67 16 11 C -0.25 -10.43 9.15 22.35 0.20 -10.23 16 12 C 0.14 6.41 6.65 22.67 0.15 6.56 16 13 O -0.22 -12.45 9.75 -21.27 -0.21 -12.66 16 14 C -0.41 -23.07 9.48 67.92 0.64 -22.42 16 15 H 0.11 5.35 5.19 -2.91 -0.02 5.33 16 16 C -0.02 -1.00 5.49 84.84 0.47 -0.54 16 17 N -0.91 -53.99 13.67 21.61 0.30 -53.69 16 18 Si 1.02 41.12 29.55 68.60 2.03 43.15 16 19 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 20 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 21 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 22 C -0.20 -7.87 9.97 22.35 0.22 -7.64 16 23 C -0.02 -0.71 9.35 22.51 0.21 -0.50 16 24 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.07 1.77 7.35 -2.39 -0.02 1.75 16 26 H 0.10 1.87 6.47 -2.38 -0.02 1.86 16 27 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.42 0.63 8.83 -92.71 -0.82 -0.18 16 30 H 0.41 2.80 8.93 -92.71 -0.83 1.97 16 31 H 0.13 4.29 7.55 -2.91 -0.02 4.26 16 32 H 0.13 5.29 5.62 -2.91 -0.02 5.27 16 33 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 34 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 35 H 0.17 3.62 6.35 -2.91 -0.02 3.60 16 Total: -1.00 -77.45 314.70 3.92 -73.53 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -0.48 Total: 19.74 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 4.19 Total: -24.25 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -1.69 Total: -74.23 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.12 Total: -37.94 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -77.45 3.92 -73.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771575816.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.276 kcal (2) G-P(sol) polarization free energy of solvation -77.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds