Wall clock time and date at job start Tue Mar 31 2020 00:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50701 * 120.00253 * 2 1 4 4 C 1.31009 * 119.99492 * 179.97438 * 2 1 3 5 5 C 1.50695 * 120.00270 * 356.61049 * 4 2 1 6 6 S 1.81402 * 109.46808 * 113.78517 * 5 4 2 7 7 C 1.81400 * 102.99999 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47526 * 180.02562 * 7 6 5 9 9 C 1.38311 * 119.92878 * 89.99408 * 8 7 6 10 10 C 1.38098 * 120.06775 * 179.97438 * 9 8 7 11 11 C 1.38885 * 119.93041 * 0.02644 * 10 9 8 12 12 O 1.35748 * 120.06806 * 180.02562 * 11 10 9 13 13 C 1.34827 * 116.99989 * 5.65949 * 12 11 10 14 14 H 1.08001 * 120.00512 * 354.83615 * 13 12 11 15 15 C 1.38660 * 119.99933 * 174.82997 * 13 12 11 16 16 N 1.31547 * 120.00090 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99942 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46895 * 59.99943 * 17 15 13 19 19 H 1.48502 * 109.46815 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46930 * 300.00240 * 17 15 13 21 21 C 1.38876 * 119.86260 * 0.27366 * 11 10 9 22 22 C 1.38104 * 119.92722 * 359.44753 * 21 11 10 23 23 H 1.08997 * 109.47042 * 264.56514 * 1 2 3 24 24 H 1.08997 * 109.47060 * 24.56348 * 1 2 3 25 25 H 1.08998 * 109.47347 * 144.56362 * 1 2 3 26 26 H 1.09006 * 109.46876 * 239.99863 * 3 2 1 27 27 H 1.08994 * 109.47008 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.46829 * 119.99842 * 3 2 1 29 29 H 1.08001 * 119.99606 * 176.61326 * 4 2 1 30 30 H 1.09004 * 109.47166 * 353.78815 * 5 4 2 31 31 H 1.08996 * 109.47106 * 233.78489 * 5 4 2 32 32 H 1.08998 * 109.47329 * 59.99853 * 7 6 5 33 33 H 1.09007 * 109.47091 * 300.00538 * 7 6 5 34 34 H 1.07999 * 119.96571 * 0.02562 * 9 8 7 35 35 H 1.07996 * 120.03723 * 180.02562 * 10 9 8 36 36 H 0.97003 * 120.00096 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.03541 * 179.72666 * 21 11 10 38 38 H 1.08008 * 119.96250 * 180.27192 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1346 0.0005 5 6 1.4104 -2.4385 0.0782 6 16 1.6255 -3.3538 -1.4731 7 6 0.6642 -4.8661 -1.1913 8 6 0.7453 -5.7475 -2.4110 9 6 1.7558 -6.6857 -2.5184 10 6 1.8325 -7.4952 -3.6346 11 6 0.8938 -7.3662 -4.6500 12 8 0.9663 -8.1609 -5.7482 13 6 1.9006 -9.1329 -5.7398 14 1 2.6034 -9.1995 -4.9225 15 6 1.9590 -10.0473 -6.7805 16 7 1.1033 -9.9661 -7.7763 17 14 3.2531 -11.3946 -6.7686 18 1 3.0780 -12.2382 -5.5591 19 1 3.1046 -12.2343 -7.9843 20 1 4.6056 -10.7816 -6.7530 21 6 -0.1159 -6.4189 -4.5420 22 6 -0.1906 -5.6163 -3.4206 23 1 -0.3633 -0.0973 1.0230 24 1 -0.3633 0.9346 -0.4272 25 1 -0.3634 -0.8373 -0.5958 26 1 2.8872 1.3627 -0.8900 27 1 1.5523 2.1335 -0.0005 28 1 2.8871 1.3627 0.8900 29 1 3.2405 -1.1355 -0.0547 30 1 0.3509 -2.2382 0.2380 31 1 1.7969 -3.0318 0.9068 32 1 -0.3765 -4.6047 -1.0000 33 1 1.0690 -5.3989 -0.3308 34 1 2.4852 -6.7858 -1.7283 35 1 2.6215 -8.2279 -3.7178 36 1 1.1445 -10.6056 -8.5046 37 1 -0.8448 -6.3132 -5.3320 38 1 -0.9783 -4.8824 -3.3340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772265046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:57 Heat of formation + Delta-G solvation = -4.258414 kcal Electronic energy + Delta-G solvation = -17811.152668 eV Core-core repulsion = 14938.383876 eV Total energy + Delta-G solvation = -2872.768791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.06011 -37.05435 -36.71141 -32.49108 -31.14201 -30.53792 -30.19270 -28.02402 -26.34809 -25.12309 -24.39804 -22.00045 -20.62235 -18.14451 -18.00905 -17.01191 -16.15912 -15.47197 -14.87528 -14.70393 -14.66774 -14.50481 -14.20289 -13.73726 -13.65909 -13.42550 -13.03308 -12.75079 -12.71650 -12.55231 -12.22732 -12.05113 -11.78979 -11.63620 -11.26178 -11.22514 -10.87887 -10.76054 -10.66163 -10.46382 -9.92372 -9.37251 -8.87801 -8.80613 -8.21644 -7.49622 -7.18051 -6.48429 -4.06495 1.24961 2.07695 2.20913 2.63946 2.89945 3.12143 3.14241 3.15935 3.94469 4.48171 4.58201 4.68478 4.92146 5.06608 5.07810 5.15389 5.19132 5.23452 5.28356 5.32595 5.47976 5.48534 5.58933 5.68531 5.71650 5.72908 5.77843 5.82345 6.18586 6.38029 6.40282 6.62483 6.65705 6.86772 7.01658 7.20287 7.32678 7.40421 7.77608 7.96493 8.96825 9.65914 10.69168 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040648 B = 0.002751 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.683557 B =10174.562490 C =10369.908955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.117 4.117 3 C -0.117 4.117 4 C -0.148 4.148 5 C -0.068 4.068 6 S -0.261 6.261 7 C -0.017 4.017 8 C -0.180 4.180 9 C -0.049 4.049 10 C -0.235 4.235 11 C 0.160 3.840 12 O -0.173 6.173 13 C -0.393 4.393 14 H 0.093 0.907 15 C 0.040 3.960 16 N -0.860 5.860 17 Si 0.942 3.058 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.269 1.269 21 C -0.194 4.194 22 C -0.053 4.053 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.271 0.729 37 H 0.119 0.881 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.004 15.020 15.604 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.121 4.121 3 C -0.174 4.174 4 C -0.167 4.167 5 C -0.215 4.215 6 S -0.029 6.029 7 C -0.164 4.164 8 C -0.183 4.183 9 C -0.069 4.069 10 C -0.254 4.254 11 C 0.105 3.895 12 O -0.076 6.076 13 C -0.469 4.469 14 H 0.110 0.890 15 C -0.165 4.165 16 N -0.495 5.495 17 Si 0.766 3.234 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.194 1.194 21 C -0.213 4.213 22 C -0.073 4.073 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.146 0.854 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.396 15.173 14.291 20.847 hybrid contribution 0.088 -1.076 1.097 1.539 sum 0.484 14.097 15.388 20.875 Atomic orbital electron populations 1.20952 0.92305 1.02854 1.01963 1.21648 0.95946 0.94938 0.99534 1.20832 0.99870 0.94520 1.02151 1.22046 0.99524 0.91775 1.03387 1.22497 1.03040 0.97432 0.98567 1.87535 1.70276 1.21580 1.23531 1.22051 1.00795 0.94229 0.99340 1.18587 1.00909 1.01656 0.97108 1.20588 0.95804 0.93906 0.96638 1.21131 1.03097 1.05123 0.96085 1.19427 0.92636 0.90714 0.86743 1.83974 1.52310 1.39066 1.32256 1.21313 1.10201 1.06322 1.09039 0.88995 1.25312 0.98251 0.98072 0.94845 1.70025 1.34590 1.35777 1.09085 0.85769 0.79752 0.79628 0.78231 1.19447 1.20231 1.19426 1.20184 1.00766 1.00283 1.00071 1.20473 0.97325 0.97061 0.92434 0.91571 0.91793 0.91038 0.91401 0.91920 0.91592 0.86661 0.89641 0.89850 0.90419 0.90441 0.87367 0.85383 0.91869 0.86324 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 8.94 36.00 0.32 -0.67 16 2 C -0.12 -1.05 6.05 -101.07 -0.61 -1.66 16 3 C -0.12 -0.84 10.04 36.01 0.36 -0.48 16 4 C -0.15 -1.50 9.16 -36.03 -0.33 -1.83 16 5 C -0.07 -0.73 6.01 36.00 0.22 -0.51 16 6 S -0.26 -3.72 21.70 -107.50 -2.33 -6.06 16 7 C -0.02 -0.24 6.06 36.00 0.22 -0.02 16 8 C -0.18 -3.14 5.14 -104.58 -0.54 -3.68 16 9 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 10 C -0.23 -5.14 9.17 -39.39 -0.36 -5.50 16 11 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 12 O -0.17 -4.95 9.76 0.07 0.00 -4.95 16 13 C -0.39 -10.94 9.49 30.89 0.29 -10.65 16 14 H 0.09 2.36 5.21 -52.49 -0.27 2.09 16 15 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 16 N -0.86 -25.14 13.67 55.48 0.76 -24.38 16 17 Si 0.94 20.42 29.55 -169.99 -5.02 15.39 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 C -0.19 -4.13 9.99 -39.39 -0.39 -4.52 16 22 C -0.05 -0.96 9.69 -39.61 -0.38 -1.35 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.45 7.94 -51.93 -0.41 0.04 16 25 H 0.07 0.64 6.58 -51.93 -0.34 0.30 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.38 7.87 -51.93 -0.41 -0.02 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.12 1.15 8.05 -52.49 -0.42 0.73 16 30 H 0.09 0.82 5.67 -51.92 -0.29 0.53 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.08 0.98 8.08 -51.92 -0.42 0.56 16 34 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 38 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -30.26 335.76 -8.87 -39.13 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.38 Total: 3.35 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -1.95 Total: -27.55 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.76 Total: -24.38 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: 0.00 Total: -4.95 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -2.33 Total: -6.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.26 -8.87 -39.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772265046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.869 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds