Wall clock time and date at job start Tue Mar 31 2020 00:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50701 * 120.00253 * 2 1 4 4 C 1.31009 * 119.99492 * 179.97438 * 2 1 3 5 5 C 1.50695 * 120.00270 * 356.61049 * 4 2 1 6 6 S 1.81402 * 109.46808 * 113.78517 * 5 4 2 7 7 C 1.81400 * 102.99999 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47526 * 180.02562 * 7 6 5 9 9 C 1.38311 * 119.92878 * 89.99408 * 8 7 6 10 10 C 1.38098 * 120.06775 * 179.97438 * 9 8 7 11 11 C 1.38885 * 119.93041 * 0.02644 * 10 9 8 12 12 O 1.35748 * 120.06806 * 180.02562 * 11 10 9 13 13 C 1.34827 * 116.99989 * 5.65949 * 12 11 10 14 14 H 1.08001 * 120.00512 * 354.83615 * 13 12 11 15 15 C 1.38660 * 119.99933 * 174.82997 * 13 12 11 16 16 N 1.31547 * 120.00090 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99942 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46895 * 59.99943 * 17 15 13 19 19 H 1.48502 * 109.46815 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46930 * 300.00240 * 17 15 13 21 21 C 1.38876 * 119.86260 * 0.27366 * 11 10 9 22 22 C 1.38104 * 119.92722 * 359.44753 * 21 11 10 23 23 H 1.08997 * 109.47042 * 264.56514 * 1 2 3 24 24 H 1.08997 * 109.47060 * 24.56348 * 1 2 3 25 25 H 1.08998 * 109.47347 * 144.56362 * 1 2 3 26 26 H 1.09006 * 109.46876 * 239.99863 * 3 2 1 27 27 H 1.08994 * 109.47008 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.46829 * 119.99842 * 3 2 1 29 29 H 1.08001 * 119.99606 * 176.61326 * 4 2 1 30 30 H 1.09004 * 109.47166 * 353.78815 * 5 4 2 31 31 H 1.08996 * 109.47106 * 233.78489 * 5 4 2 32 32 H 1.08998 * 109.47329 * 59.99853 * 7 6 5 33 33 H 1.09007 * 109.47091 * 300.00538 * 7 6 5 34 34 H 1.07999 * 119.96571 * 0.02562 * 9 8 7 35 35 H 1.07996 * 120.03723 * 180.02562 * 10 9 8 36 36 H 0.97003 * 120.00096 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.03541 * 179.72666 * 21 11 10 38 38 H 1.08008 * 119.96250 * 180.27192 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1346 0.0005 5 6 1.4104 -2.4385 0.0782 6 16 1.6255 -3.3538 -1.4731 7 6 0.6642 -4.8661 -1.1913 8 6 0.7453 -5.7475 -2.4110 9 6 1.7558 -6.6857 -2.5184 10 6 1.8325 -7.4952 -3.6346 11 6 0.8938 -7.3662 -4.6500 12 8 0.9663 -8.1609 -5.7482 13 6 1.9006 -9.1329 -5.7398 14 1 2.6034 -9.1995 -4.9225 15 6 1.9590 -10.0473 -6.7805 16 7 1.1033 -9.9661 -7.7763 17 14 3.2531 -11.3946 -6.7686 18 1 3.0780 -12.2382 -5.5591 19 1 3.1046 -12.2343 -7.9843 20 1 4.6056 -10.7816 -6.7530 21 6 -0.1159 -6.4189 -4.5420 22 6 -0.1906 -5.6163 -3.4206 23 1 -0.3633 -0.0973 1.0230 24 1 -0.3633 0.9346 -0.4272 25 1 -0.3634 -0.8373 -0.5958 26 1 2.8872 1.3627 -0.8900 27 1 1.5523 2.1335 -0.0005 28 1 2.8871 1.3627 0.8900 29 1 3.2405 -1.1355 -0.0547 30 1 0.3509 -2.2382 0.2380 31 1 1.7969 -3.0318 0.9068 32 1 -0.3765 -4.6047 -1.0000 33 1 1.0690 -5.3989 -0.3308 34 1 2.4852 -6.7858 -1.7283 35 1 2.6215 -8.2279 -3.7178 36 1 1.1445 -10.6056 -8.5046 37 1 -0.8448 -6.3132 -5.3320 38 1 -0.9783 -4.8824 -3.3340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772265046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:56 Heat of formation + Delta-G solvation = -19.488719 kcal Electronic energy + Delta-G solvation = -17811.813103 eV Core-core repulsion = 14938.383876 eV Total energy + Delta-G solvation = -2873.429227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.80230 -38.45595 -37.73492 -34.42002 -32.69188 -31.82139 -31.26426 -28.62286 -27.99615 -26.78423 -25.26616 -23.66345 -22.23831 -19.87583 -18.97182 -18.74284 -17.25449 -16.52663 -16.37675 -16.17201 -16.04600 -15.62161 -15.39316 -15.21266 -15.01243 -14.59702 -14.36658 -14.28932 -13.81087 -13.52063 -13.26665 -13.07312 -12.94975 -12.79310 -12.58639 -12.47772 -12.38488 -12.15095 -12.12240 -11.84017 -11.21302 -11.02860 -10.73602 -9.82269 -9.59714 -8.89295 -8.59107 -8.48369 -6.16437 0.14086 0.57224 0.86624 1.34896 1.44167 1.51278 1.60797 1.88715 2.17350 2.84288 3.17429 3.48012 3.77527 3.88669 3.94847 4.03999 4.16052 4.20073 4.32440 4.41331 4.55217 4.57713 4.62546 4.72402 4.75339 4.84820 4.90571 4.98597 5.03286 5.12527 5.14245 5.15476 5.25391 5.52382 5.67872 5.71908 5.72254 5.92987 6.00854 6.15762 6.95904 7.75332 8.74406 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040648 B = 0.002751 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.683557 B =10174.562490 C =10369.908955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 C -0.120 4.120 4 C -0.173 4.173 5 C -0.048 4.048 6 S -0.310 6.310 7 C -0.012 4.012 8 C -0.155 4.155 9 C -0.051 4.051 10 C -0.243 4.243 11 C 0.119 3.881 12 O -0.229 6.229 13 C -0.416 4.416 14 H 0.102 0.898 15 C -0.022 4.022 16 N -0.919 5.919 17 Si 1.019 2.981 18 H -0.256 1.256 19 H -0.271 1.271 20 H -0.258 1.258 21 C -0.205 4.205 22 C -0.048 4.048 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.121 0.879 36 H 0.273 0.727 37 H 0.116 0.884 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.289 16.858 18.923 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.111 4.111 3 C -0.176 4.176 4 C -0.193 4.193 5 C -0.195 4.195 6 S -0.079 6.079 7 C -0.159 4.159 8 C -0.157 4.157 9 C -0.071 4.071 10 C -0.262 4.262 11 C 0.068 3.932 12 O -0.135 6.135 13 C -0.492 4.492 14 H 0.119 0.881 15 C -0.220 4.220 16 N -0.557 5.557 17 Si 0.838 3.162 18 H -0.181 1.181 19 H -0.196 1.196 20 H -0.182 1.182 21 C -0.224 4.224 22 C -0.068 4.068 23 H 0.099 0.901 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.129 0.871 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.157 0.843 35 H 0.139 0.861 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.682 17.039 17.655 24.546 hybrid contribution -0.094 -1.223 0.403 1.291 sum 0.588 15.816 18.058 24.012 Atomic orbital electron populations 1.21011 0.91491 1.03065 1.02790 1.21975 0.96728 0.95292 0.97108 1.20899 1.00178 0.94075 1.02495 1.22054 0.99508 0.92002 1.05687 1.22506 1.04038 0.96958 0.96007 1.87723 1.70552 1.22402 1.27184 1.22047 1.02509 0.93538 0.97810 1.19070 0.98758 1.00312 0.97601 1.20929 0.96762 0.93212 0.96152 1.21237 1.02510 1.05759 0.96741 1.19967 0.94593 0.91535 0.87130 1.83942 1.53912 1.40886 1.34770 1.21802 1.10692 1.06895 1.09791 0.88054 1.26612 1.00723 1.00545 0.94106 1.70173 1.37499 1.37622 1.10416 0.84647 0.76706 0.76109 0.78750 1.18057 1.19553 1.18209 1.20443 1.00239 1.00322 1.01404 1.20865 0.98227 0.96576 0.91129 0.90126 0.90815 0.91865 0.91637 0.90672 0.90631 0.87101 0.88291 0.88742 0.88011 0.88330 0.84308 0.86101 0.91754 0.86587 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.94 71.23 0.64 -0.96 16 2 C -0.11 -1.61 6.05 -16.50 -0.10 -1.71 16 3 C -0.12 -1.40 10.04 71.24 0.72 -0.68 16 4 C -0.17 -3.05 9.16 25.64 0.23 -2.82 16 5 C -0.05 -0.86 6.01 71.23 0.43 -0.43 16 6 S -0.31 -7.90 21.70 -56.49 -1.23 -9.13 16 7 C -0.01 -0.29 6.06 71.23 0.43 0.14 16 8 C -0.16 -4.97 5.14 -19.83 -0.10 -5.08 16 9 C -0.05 -1.81 9.69 22.25 0.22 -1.59 16 10 C -0.24 -10.80 9.17 22.39 0.21 -10.60 16 11 C 0.12 6.04 6.65 22.58 0.15 6.19 16 12 O -0.23 -13.95 9.76 -22.68 -0.22 -14.18 16 13 C -0.42 -24.46 9.49 67.92 0.64 -23.81 16 14 H 0.10 5.46 5.21 -2.91 -0.02 5.45 16 15 C -0.02 -1.27 5.49 84.84 0.47 -0.80 16 16 N -0.92 -56.79 13.67 21.61 0.30 -56.49 16 17 Si 1.02 43.06 29.55 68.60 2.03 45.08 16 18 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 21 C -0.20 -8.89 9.99 22.39 0.22 -8.67 16 22 C -0.05 -1.67 9.69 22.25 0.22 -1.45 16 23 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.07 0.79 7.94 -2.39 -0.02 0.77 16 25 H 0.06 0.92 6.58 -2.39 -0.02 0.91 16 26 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.07 0.69 7.87 -2.39 -0.02 0.67 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.11 2.02 8.05 -2.91 -0.02 1.99 16 30 H 0.10 1.50 5.67 -2.39 -0.01 1.49 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.10 1.99 8.08 -2.39 -0.02 1.97 16 33 H 0.10 1.99 8.08 -2.39 -0.02 1.97 16 34 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 38 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -70.44 335.76 6.28 -64.15 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 1.04 Total: 22.83 kcal Atomic # 6 Polarization: -56.63 SS G_CDS: 4.37 Total: -52.26 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.30 Total: -56.49 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.22 Total: -14.18 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.23 Total: -9.13 kcal Total: -70.44 6.28 -64.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772265046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.664 kcal (2) G-P(sol) polarization free energy of solvation -70.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds