Wall clock time and date at job start Tue Mar 31 2020 01:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35329 * 116.99683 * 2 1 4 4 N 1.32468 * 118.98156 * 180.02562 * 3 2 1 5 5 C 1.31996 * 120.94008 * 179.97438 * 4 3 2 6 6 C 1.40316 * 118.95629 * 359.97438 * 5 4 3 7 7 C 1.46997 * 120.91442 * 180.02562 * 6 5 4 8 8 C 1.35051 * 120.00190 * 180.02562 * 7 6 5 9 9 C 1.41806 * 120.00171 * 179.97438 * 8 7 6 10 10 O 1.21638 * 120.00047 * 359.97438 * 9 8 7 11 11 O 1.34927 * 120.00181 * 179.97438 * 9 8 7 12 12 C 1.42895 * 117.00340 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47255 * 30.00090 * 12 11 9 14 14 C 1.53006 * 109.47036 * 270.00213 * 12 11 9 15 15 C 1.50697 * 109.47590 * 149.99835 * 12 11 9 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 12 11 18 18 N 1.31510 * 119.99600 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 120.00227 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46909 * 90.00072 * 19 17 15 21 21 H 1.48503 * 109.46868 * 209.99959 * 19 17 15 22 22 H 1.48495 * 109.46964 * 330.00013 * 19 17 15 23 23 C 1.40317 * 118.17454 * 0.27724 * 6 5 4 24 24 N 1.31996 * 118.95264 * 359.43989 * 23 6 5 25 25 H 1.08998 * 109.47021 * 299.99400 * 1 2 3 26 26 H 1.09003 * 109.47615 * 59.99818 * 1 2 3 27 27 H 1.08997 * 109.46857 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.52188 * 180.02562 * 5 4 3 29 29 H 1.08006 * 119.99858 * 359.97438 * 7 6 5 30 30 H 1.08004 * 120.00098 * 0.02562 * 8 7 6 31 31 H 1.09001 * 109.47002 * 299.99477 * 14 12 11 32 32 H 1.08993 * 109.46955 * 59.99914 * 14 12 11 33 33 H 1.09000 * 109.47050 * 179.97438 * 14 12 11 34 34 H 0.97006 * 120.00212 * 179.97438 * 18 17 15 35 35 H 1.07996 * 120.52483 * 179.72911 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2058 0.0000 4 7 3.3672 1.2517 -0.0005 5 6 4.0062 2.4067 -0.0010 6 6 3.2608 3.5955 -0.0016 7 6 3.9281 4.9052 -0.0028 8 6 3.1925 6.0379 -0.0028 9 6 3.8363 7.3014 -0.0033 10 8 5.0510 7.3651 -0.0033 11 8 3.1014 8.4330 -0.0038 12 6 3.8158 9.6705 -0.0050 13 1 4.7680 9.5399 -0.5191 14 6 4.0713 10.1132 1.4372 15 6 3.0011 10.7203 -0.7158 16 1 2.0342 10.4678 -1.1254 17 6 3.4896 12.0034 -0.8424 18 7 4.6667 12.3110 -0.3432 19 14 2.4793 13.3048 -1.7229 20 1 1.6059 13.9999 -0.7436 21 1 3.3892 14.2898 -2.3611 22 1 1.6400 12.6593 -2.7640 23 6 1.8609 3.4997 0.0044 24 7 1.3022 2.3038 -0.0010 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 5.0858 2.4362 -0.0019 29 1 5.0067 4.9618 -0.0028 30 1 2.1140 5.9813 -0.0015 31 1 3.1191 10.2439 1.9513 32 1 4.6606 9.3540 1.9512 33 1 4.6166 11.0570 1.4363 34 1 5.0106 13.2137 -0.4325 35 1 1.2502 4.3904 0.0086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774087042.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:41 Heat of formation + Delta-G solvation = -51.620257 kcal Electronic energy + Delta-G solvation = -20111.954019 eV Core-core repulsion = 16690.838250 eV Total energy + Delta-G solvation = -3421.115769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.55348 -39.73221 -38.74859 -36.18998 -34.59989 -34.14088 -33.24491 -30.60400 -29.43455 -27.88275 -25.55231 -25.30990 -24.72197 -22.79911 -20.72070 -19.47617 -19.14474 -18.27147 -17.16263 -16.76255 -16.65912 -15.72863 -15.44297 -15.06405 -14.84470 -14.75933 -14.45711 -14.36286 -13.96987 -13.09497 -12.53380 -12.38909 -12.23719 -11.93197 -11.85288 -11.49749 -11.33874 -11.26401 -11.09527 -10.85305 -10.54358 -10.39989 -10.28915 -9.83343 -9.56222 -9.52003 -8.89300 -8.58783 -8.47513 -6.18546 -4.25601 0.03322 0.68850 1.65132 2.19684 3.24273 3.29670 3.33287 3.35234 3.61744 3.64779 3.70923 4.13312 4.27275 4.31998 4.49837 4.74268 4.83620 4.89166 5.09548 5.14610 5.18389 5.32377 5.64886 5.71812 6.11312 6.22451 6.34272 6.63363 6.74885 6.88754 6.91216 7.14396 7.59145 7.66066 7.72445 7.91805 8.13574 8.60656 8.87876 9.40114 10.88916 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036890 B = 0.002843 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.838248 B = 9845.202715 C =10349.285221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.289 6.289 3 C 0.499 3.501 4 N -0.524 5.524 5 C 0.213 3.787 6 C -0.211 4.211 7 C -0.015 4.015 8 C -0.171 4.171 9 C 0.484 3.516 10 O -0.521 6.521 11 O -0.345 6.345 12 C 0.210 3.790 13 H 0.046 0.954 14 C -0.156 4.156 15 C -0.521 4.521 16 H 0.068 0.932 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.911 3.089 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.206 3.794 24 N -0.565 5.565 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.185 0.815 29 H 0.146 0.854 30 H 0.136 0.864 31 H 0.036 0.964 32 H 0.015 0.985 33 H 0.098 0.902 34 H 0.266 0.734 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.175 -20.184 1.356 21.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.189 6.189 3 C 0.198 3.802 4 N -0.248 5.248 5 C 0.046 3.954 6 C -0.216 4.216 7 C -0.035 4.035 8 C -0.190 4.190 9 C 0.330 3.670 10 O -0.414 6.414 11 O -0.261 6.261 12 C 0.157 3.843 13 H 0.064 0.936 14 C -0.213 4.213 15 C -0.559 4.559 16 H 0.087 0.913 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.738 3.262 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.196 1.196 23 C 0.040 3.960 24 N -0.294 5.294 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.202 0.798 29 H 0.164 0.836 30 H 0.153 0.847 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.164 -21.218 1.368 22.137 hybrid contribution -0.208 1.776 -0.372 1.826 sum -6.372 -19.442 0.995 20.484 Atomic orbital electron populations 1.23043 0.75368 1.03702 1.03133 1.86061 1.23634 1.22742 1.86503 1.20892 0.86263 0.84885 0.88139 1.67573 1.07402 1.30335 1.19513 1.23494 1.00850 0.84780 0.86307 1.20608 0.95591 0.95736 1.09664 1.22037 1.00619 0.88733 0.92149 1.21497 1.01343 0.90811 1.05380 1.19816 0.86149 0.86679 0.74341 1.90822 1.15343 1.88797 1.46466 1.86198 1.42291 1.16006 1.81565 1.20241 0.93410 0.75923 0.94702 0.93643 1.22188 0.99921 1.02589 0.96648 1.21034 1.04784 0.93573 1.36490 0.91336 1.24896 0.95267 0.98265 0.95586 1.69900 1.17429 1.20494 1.44829 0.86279 0.79622 0.80617 0.79642 1.20367 1.20981 1.19626 1.23466 0.91930 0.94496 0.86121 1.68063 1.41142 0.99129 1.21041 0.91663 0.91659 0.87746 0.79771 0.83613 0.84659 0.94478 0.96549 0.88330 0.92416 0.80189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.35 101.05 1.05 1.34 16 2 O -0.29 -3.12 10.55 -17.68 -0.19 -3.31 16 3 C 0.50 5.90 8.48 -90.99 -0.77 5.12 16 4 N -0.52 -6.16 10.44 -14.32 -0.15 -6.31 16 5 C 0.21 2.00 11.10 -16.70 -0.19 1.82 16 6 C -0.21 -2.09 5.90 -104.79 -0.62 -2.71 16 7 C -0.02 -0.18 9.45 -37.17 -0.35 -0.53 16 8 C -0.17 -2.38 9.35 -39.35 -0.37 -2.75 16 9 C 0.48 9.67 7.66 32.10 0.25 9.91 16 10 O -0.52 -11.76 15.34 -19.37 -0.30 -12.06 16 11 O -0.34 -8.04 9.73 -41.12 -0.40 -8.44 16 12 C 0.21 5.61 2.51 -27.88 -0.07 5.54 16 13 H 0.05 1.34 7.11 -51.93 -0.37 0.97 16 14 C -0.16 -3.93 9.31 37.16 0.35 -3.58 16 15 C -0.52 -14.54 8.89 -34.44 -0.31 -14.85 16 16 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -25.17 11.32 55.43 0.63 -24.55 16 19 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C 0.21 2.02 10.68 -16.70 -0.18 1.85 16 24 N -0.57 -6.21 9.18 -14.32 -0.13 -6.34 16 25 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 26 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.19 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.15 1.62 7.45 -52.48 -0.39 1.23 16 30 H 0.14 1.50 6.16 -52.48 -0.32 1.17 16 31 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 2.66 6.07 -51.93 -0.32 2.34 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 35 H 0.18 1.37 6.30 -52.49 -0.33 1.04 16 LS Contribution 314.28 15.07 4.74 4.74 Total: -1.00 -33.19 314.28 -5.93 -39.13 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -3.81 Total: -1.56 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.31 Total: 2.78 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.35 Total: -37.19 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.88 Total: -23.81 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.19 -5.93 -39.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774087042.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.495 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds