Wall clock time and date at job start Tue Mar 31 2020 01:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35329 * 116.99683 * 2 1 4 4 N 1.32468 * 118.98156 * 180.02562 * 3 2 1 5 5 C 1.31996 * 120.94008 * 179.97438 * 4 3 2 6 6 C 1.40316 * 118.95629 * 359.97438 * 5 4 3 7 7 C 1.46997 * 120.91442 * 180.02562 * 6 5 4 8 8 C 1.35051 * 120.00190 * 180.02562 * 7 6 5 9 9 C 1.41806 * 120.00171 * 179.97438 * 8 7 6 10 10 O 1.21638 * 120.00047 * 359.97438 * 9 8 7 11 11 O 1.34927 * 120.00181 * 179.97438 * 9 8 7 12 12 C 1.42895 * 117.00340 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47255 * 30.00090 * 12 11 9 14 14 C 1.53006 * 109.47036 * 270.00213 * 12 11 9 15 15 C 1.50697 * 109.47590 * 149.99835 * 12 11 9 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 12 11 18 18 N 1.31510 * 119.99600 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 120.00227 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46909 * 90.00072 * 19 17 15 21 21 H 1.48503 * 109.46868 * 209.99959 * 19 17 15 22 22 H 1.48495 * 109.46964 * 330.00013 * 19 17 15 23 23 C 1.40317 * 118.17454 * 0.27724 * 6 5 4 24 24 N 1.31996 * 118.95264 * 359.43989 * 23 6 5 25 25 H 1.08998 * 109.47021 * 299.99400 * 1 2 3 26 26 H 1.09003 * 109.47615 * 59.99818 * 1 2 3 27 27 H 1.08997 * 109.46857 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.52188 * 180.02562 * 5 4 3 29 29 H 1.08006 * 119.99858 * 359.97438 * 7 6 5 30 30 H 1.08004 * 120.00098 * 0.02562 * 8 7 6 31 31 H 1.09001 * 109.47002 * 299.99477 * 14 12 11 32 32 H 1.08993 * 109.46955 * 59.99914 * 14 12 11 33 33 H 1.09000 * 109.47050 * 179.97438 * 14 12 11 34 34 H 0.97006 * 120.00212 * 179.97438 * 18 17 15 35 35 H 1.07996 * 120.52483 * 179.72911 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2058 0.0000 4 7 3.3672 1.2517 -0.0005 5 6 4.0062 2.4067 -0.0010 6 6 3.2608 3.5955 -0.0016 7 6 3.9281 4.9052 -0.0028 8 6 3.1925 6.0379 -0.0028 9 6 3.8363 7.3014 -0.0033 10 8 5.0510 7.3651 -0.0033 11 8 3.1014 8.4330 -0.0038 12 6 3.8158 9.6705 -0.0050 13 1 4.7680 9.5399 -0.5191 14 6 4.0713 10.1132 1.4372 15 6 3.0011 10.7203 -0.7158 16 1 2.0342 10.4678 -1.1254 17 6 3.4896 12.0034 -0.8424 18 7 4.6667 12.3110 -0.3432 19 14 2.4793 13.3048 -1.7229 20 1 1.6059 13.9999 -0.7436 21 1 3.3892 14.2898 -2.3611 22 1 1.6400 12.6593 -2.7640 23 6 1.8609 3.4997 0.0044 24 7 1.3022 2.3038 -0.0010 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 5.0858 2.4362 -0.0019 29 1 5.0067 4.9618 -0.0028 30 1 2.1140 5.9813 -0.0015 31 1 3.1191 10.2439 1.9513 32 1 4.6606 9.3540 1.9512 33 1 4.6166 11.0570 1.4363 34 1 5.0106 13.2137 -0.4325 35 1 1.2502 4.3904 0.0086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774087042.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:41 Heat of formation + Delta-G solvation = -75.339233 kcal Electronic energy + Delta-G solvation = -20112.982551 eV Core-core repulsion = 16690.838250 eV Total energy + Delta-G solvation = -3422.144301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.36212 -41.36650 -39.53379 -37.87775 -35.66293 -35.27967 -34.99107 -31.96892 -31.04667 -28.56645 -27.45080 -26.46198 -25.65194 -24.06594 -22.38304 -20.73361 -19.93136 -19.47710 -18.65331 -18.42076 -17.51889 -17.20027 -16.77731 -16.50483 -16.28859 -15.76865 -15.50643 -15.09431 -14.87596 -14.68681 -14.25188 -13.96778 -13.26509 -13.22424 -13.02017 -12.92328 -12.78548 -12.63955 -12.41026 -12.35490 -12.15643 -12.14871 -11.52963 -11.46762 -11.43995 -10.93803 -10.56798 -10.36726 -9.50469 -8.26519 -6.43281 -0.90941 -0.06345 0.58933 1.43442 1.45450 1.49000 1.56756 2.10083 2.17422 2.47959 2.67023 2.86916 3.04139 3.34642 3.56437 3.66390 3.73308 4.17437 4.27645 4.37798 4.38585 4.57366 4.58797 4.70490 4.80791 4.85327 4.97670 5.05144 5.19002 5.27061 5.51127 5.53562 5.66640 5.95868 5.98046 6.12834 6.62412 6.86229 7.01121 7.29402 8.81203 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036890 B = 0.002843 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.838248 B = 9845.202715 C =10349.285221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.303 6.303 3 C 0.492 3.508 4 N -0.548 5.548 5 C 0.225 3.775 6 C -0.221 4.221 7 C 0.037 3.963 8 C -0.205 4.205 9 C 0.481 3.519 10 O -0.559 6.559 11 O -0.355 6.355 12 C 0.214 3.786 13 H 0.006 0.994 14 C -0.144 4.144 15 C -0.548 4.548 16 H 0.068 0.932 17 C 0.015 3.985 18 N -0.917 5.917 19 Si 0.983 3.017 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.265 1.265 23 C 0.212 3.788 24 N -0.574 5.574 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.132 0.868 28 H 0.217 0.783 29 H 0.150 0.850 30 H 0.164 0.836 31 H 0.045 0.955 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.270 0.730 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 -21.219 1.111 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.204 6.204 3 C 0.192 3.808 4 N -0.274 5.274 5 C 0.059 3.941 6 C -0.226 4.226 7 C 0.017 3.983 8 C -0.223 4.223 9 C 0.331 3.669 10 O -0.454 6.454 11 O -0.271 6.271 12 C 0.160 3.840 13 H 0.024 0.976 14 C -0.201 4.201 15 C -0.585 4.585 16 H 0.086 0.914 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.806 3.194 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.189 1.189 23 C 0.046 3.954 24 N -0.303 5.303 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.150 0.850 28 H 0.234 0.766 29 H 0.167 0.833 30 H 0.181 0.819 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.474 -22.286 1.131 23.534 hybrid contribution 0.221 1.846 -0.286 1.881 sum -7.253 -20.440 0.845 21.705 Atomic orbital electron populations 1.23315 0.73482 1.05642 1.03200 1.86058 1.25572 1.22658 1.86110 1.21202 0.86628 0.85440 0.87555 1.67667 1.07644 1.31252 1.20800 1.24044 1.02247 0.83918 0.83921 1.20466 0.95757 0.94982 1.11424 1.22105 1.00654 0.88548 0.87003 1.21328 1.02725 0.88180 1.10105 1.20746 0.85941 0.87329 0.72890 1.90798 1.16863 1.89085 1.48680 1.86171 1.42389 1.16059 1.82499 1.19908 0.91869 0.77489 0.94759 0.97582 1.22013 1.00116 1.01746 0.96263 1.21332 1.05080 0.94595 1.37533 0.91389 1.25845 0.96329 1.00319 0.96000 1.70023 1.18856 1.21207 1.45436 0.85185 0.78096 0.77538 0.78605 1.19238 1.20395 1.18891 1.23896 0.92275 0.94886 0.84324 1.68147 1.41077 0.99254 1.21825 0.91526 0.91576 0.84964 0.76643 0.83291 0.81866 0.93620 0.95698 0.90291 0.92056 0.78063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.35 113.37 1.17 1.62 16 2 O -0.30 -6.12 10.55 -86.17 -0.91 -7.03 16 3 C 0.49 10.81 8.48 180.48 1.53 12.34 16 4 N -0.55 -11.84 10.44 -312.17 -3.26 -15.10 16 5 C 0.22 3.65 11.10 85.17 0.95 4.59 16 6 C -0.22 -3.80 5.90 -19.97 -0.12 -3.92 16 7 C 0.04 0.75 9.45 23.83 0.23 0.98 16 8 C -0.20 -5.41 9.35 22.42 0.21 -5.20 16 9 C 0.48 19.44 7.66 68.70 0.53 19.96 16 10 O -0.56 -25.88 15.34 19.38 0.30 -25.58 16 11 O -0.35 -16.87 9.73 -58.43 -0.57 -17.44 16 12 C 0.21 11.75 2.51 29.85 0.07 11.83 16 13 H 0.01 0.39 7.11 -2.39 -0.02 0.38 16 14 C -0.14 -7.41 9.31 71.98 0.67 -6.74 16 15 C -0.55 -31.08 8.89 25.60 0.23 -30.85 16 16 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16 17 C 0.01 0.81 5.30 84.66 0.45 1.26 16 18 N -0.92 -52.77 11.32 21.45 0.24 -52.53 16 19 Si 0.98 42.69 29.54 68.60 2.03 44.71 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 23 C 0.21 3.63 10.68 85.17 0.91 4.54 16 24 N -0.57 -11.45 9.18 -312.17 -2.87 -14.32 16 25 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 26 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 27 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.22 1.90 8.06 -2.91 -0.02 1.88 16 29 H 0.15 3.02 7.45 -2.91 -0.02 3.00 16 30 H 0.16 3.26 6.16 -2.91 -0.02 3.25 16 31 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 4.38 6.07 -2.39 -0.01 4.37 16 34 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 35 H 0.20 2.46 6.30 -2.91 -0.02 2.44 16 Total: -1.00 -73.27 314.28 2.90 -70.37 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.12 Total: 6.49 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 6.82 Total: 10.42 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -5.88 Total: -81.94 kcal Atomic # 8 Polarization: -48.87 SS G_CDS: -1.18 Total: -50.05 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -73.27 2.90 -70.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774087042.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.971 kcal (2) G-P(sol) polarization free energy of solvation -73.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds