Wall clock time and date at job start Tue Mar 31 2020 01:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35324 * 116.99728 * 2 1 4 4 N 1.32467 * 118.98601 * 179.97438 * 3 2 1 5 5 C 1.31997 * 120.94254 * 179.97438 * 4 3 2 6 6 C 1.40311 * 118.95378 * 0.02562 * 5 4 3 7 7 C 1.47010 * 120.91024 * 179.97438 * 6 5 4 8 8 C 1.35050 * 119.99894 * 180.27566 * 7 6 5 9 9 C 1.41801 * 120.00014 * 179.72411 * 8 7 6 10 10 O 1.21643 * 119.99912 * 359.97438 * 9 8 7 11 11 O 1.34934 * 120.00165 * 179.97438 * 9 8 7 12 12 C 1.42894 * 116.99875 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47722 * 329.99984 * 12 11 9 14 14 C 1.53008 * 109.47089 * 89.99825 * 12 11 9 15 15 C 1.50699 * 109.47032 * 209.99590 * 12 11 9 16 16 H 1.07998 * 120.00280 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00098 * 180.02562 * 15 12 11 18 18 N 1.31519 * 120.00069 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00103 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46795 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46954 * 119.99488 * 19 17 15 22 22 H 1.48499 * 109.47030 * 239.99577 * 19 17 15 23 23 C 1.40321 * 118.17957 * 0.24414 * 6 5 4 24 24 N 1.31994 * 118.94593 * 359.51611 * 23 6 5 25 25 H 1.08997 * 109.47390 * 60.00025 * 1 2 3 26 26 H 1.09005 * 109.46816 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47140 * 299.99316 * 1 2 3 28 28 H 1.08002 * 120.52055 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.99702 * 359.97438 * 7 6 5 30 30 H 1.08002 * 120.00342 * 359.71373 * 8 7 6 31 31 H 1.08994 * 109.47095 * 60.00093 * 14 12 11 32 32 H 1.08999 * 109.47131 * 179.97438 * 14 12 11 33 33 H 1.08996 * 109.47098 * 299.99783 * 14 12 11 34 34 H 0.96993 * 120.00089 * 180.02562 * 18 17 15 35 35 H 1.07993 * 120.52346 * 179.73113 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2058 0.0000 4 7 3.3672 1.2517 0.0005 5 6 4.0062 2.4067 0.0000 6 6 3.2608 3.5954 -0.0005 7 6 3.9281 4.9053 -0.0005 8 6 3.1925 6.0379 0.0046 9 6 3.8362 7.3014 0.0105 10 8 5.0510 7.3651 0.0115 11 8 3.1013 8.4330 0.0151 12 6 3.8157 9.6705 0.0215 13 1 4.7677 9.5379 0.5356 14 6 4.0721 10.1189 -1.4187 15 6 3.0006 10.7174 0.7360 16 1 2.0338 10.4631 1.1447 17 6 3.4890 12.0001 0.8679 18 7 4.6665 12.3097 0.3707 19 14 2.4789 13.2977 1.7541 20 1 1.2011 12.6992 2.2172 21 1 3.2409 13.8048 2.9234 22 1 2.1914 14.4205 0.8258 23 6 1.8608 3.4997 0.0048 24 7 1.3023 2.3038 0.0003 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 5.0858 2.4363 0.0009 29 1 5.0066 4.9619 0.0004 30 1 2.1140 5.9814 0.0040 31 1 3.1202 10.2516 -1.9328 32 1 4.6167 11.0630 -1.4138 33 1 4.6617 9.3617 -1.9355 34 1 5.0103 13.2119 0.4638 35 1 1.2502 4.3904 0.0089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774087043.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:43 Heat of formation + Delta-G solvation = -51.629155 kcal Electronic energy + Delta-G solvation = -20111.992436 eV Core-core repulsion = 16690.876281 eV Total energy + Delta-G solvation = -3421.116155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.55365 -39.73175 -38.74850 -36.19010 -34.59934 -34.14076 -33.24477 -30.60432 -29.43481 -27.88308 -25.55264 -25.31170 -24.72223 -22.79941 -20.72171 -19.47639 -19.14496 -18.27152 -17.16306 -16.76275 -16.66122 -15.72866 -15.44554 -15.06458 -14.84439 -14.75952 -14.45340 -14.36346 -13.96988 -13.09492 -12.53489 -12.38929 -12.23856 -11.93065 -11.85681 -11.49653 -11.33797 -11.26644 -11.09891 -10.86522 -10.54295 -10.37138 -10.29423 -9.83460 -9.56205 -9.52543 -8.88328 -8.58848 -8.47929 -6.18806 -4.25727 0.03335 0.68856 1.65087 2.19668 3.23079 3.29802 3.34231 3.35455 3.61747 3.64694 3.70970 4.13310 4.27278 4.31951 4.49852 4.74225 4.83592 4.89197 5.09545 5.14442 5.18393 5.32387 5.64869 5.71798 6.11301 6.22451 6.34269 6.63306 6.74892 6.88718 6.91204 7.14275 7.59264 7.66077 7.72388 7.91775 8.13477 8.60638 8.88061 9.40037 10.88727 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036838 B = 0.002844 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.906886 B = 9842.831021 C =10347.956329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.289 6.289 3 C 0.499 3.501 4 N -0.524 5.524 5 C 0.213 3.787 6 C -0.211 4.211 7 C -0.015 4.015 8 C -0.171 4.171 9 C 0.484 3.516 10 O -0.521 6.521 11 O -0.345 6.345 12 C 0.210 3.790 13 H 0.046 0.954 14 C -0.156 4.156 15 C -0.520 4.520 16 H 0.069 0.931 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.911 3.089 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.206 3.794 24 N -0.565 5.565 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.185 0.815 29 H 0.146 0.854 30 H 0.136 0.864 31 H 0.036 0.964 32 H 0.098 0.902 33 H 0.015 0.985 34 H 0.265 0.735 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 -20.192 -1.390 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.189 6.189 3 C 0.198 3.802 4 N -0.248 5.248 5 C 0.046 3.954 6 C -0.216 4.216 7 C -0.035 4.035 8 C -0.190 4.190 9 C 0.330 3.670 10 O -0.414 6.414 11 O -0.261 6.261 12 C 0.157 3.843 13 H 0.064 0.936 14 C -0.213 4.213 15 C -0.558 4.558 16 H 0.087 0.913 17 C -0.141 4.141 18 N -0.527 5.527 19 Si 0.738 3.262 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.207 1.207 23 C 0.040 3.960 24 N -0.294 5.294 25 H 0.083 0.917 26 H 0.123 0.877 27 H 0.083 0.917 28 H 0.202 0.798 29 H 0.164 0.836 30 H 0.153 0.847 31 H 0.055 0.945 32 H 0.117 0.883 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.181 -21.227 -1.408 22.154 hybrid contribution -0.191 1.778 0.377 1.828 sum -6.373 -19.449 -1.031 20.492 Atomic orbital electron populations 1.23043 0.75364 1.03703 1.03133 1.86061 1.23635 1.22743 1.86502 1.20889 0.86262 0.84884 0.88138 1.67572 1.07406 1.30336 1.19514 1.23493 1.00849 0.84779 0.86308 1.20611 0.95592 0.95736 1.09666 1.22040 1.00617 0.88732 0.92144 1.21495 1.01344 0.90811 1.05383 1.19818 0.86150 0.86680 0.74341 1.90823 1.15340 1.88801 1.46464 1.86201 1.42281 1.16005 1.81566 1.20248 0.93415 0.75933 0.94721 0.93644 1.22186 0.99927 1.02596 0.96635 1.21074 1.04787 0.93663 1.36269 0.91281 1.24902 0.95281 0.98265 0.95601 1.69910 1.17447 1.20429 1.44868 0.86228 0.80012 0.80771 0.79178 1.19475 1.20764 1.20728 1.23466 0.91929 0.94494 0.86118 1.68059 1.41151 0.99131 1.21042 0.91669 0.87746 0.91652 0.79771 0.83613 0.84658 0.94479 0.88329 0.96542 0.92471 0.80187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.35 101.05 1.05 1.34 16 2 O -0.29 -3.12 10.55 -17.66 -0.19 -3.31 16 3 C 0.50 5.90 8.48 -91.00 -0.77 5.12 16 4 N -0.52 -6.16 10.44 -14.32 -0.15 -6.31 16 5 C 0.21 2.00 11.10 -16.70 -0.19 1.82 16 6 C -0.21 -2.09 5.90 -104.78 -0.62 -2.71 16 7 C -0.02 -0.17 9.45 -37.16 -0.35 -0.53 16 8 C -0.17 -2.38 9.35 -39.35 -0.37 -2.74 16 9 C 0.48 9.66 7.66 32.09 0.25 9.91 16 10 O -0.52 -11.76 15.34 -19.37 -0.30 -12.06 16 11 O -0.34 -8.04 9.73 -41.13 -0.40 -8.44 16 12 C 0.21 5.60 2.51 -27.88 -0.07 5.53 16 13 H 0.05 1.34 7.11 -51.93 -0.37 0.97 16 14 C -0.16 -3.93 9.31 37.16 0.35 -3.58 16 15 C -0.52 -14.51 8.89 -34.44 -0.31 -14.82 16 16 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 19 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.21 2.02 10.68 -16.70 -0.18 1.85 16 24 N -0.57 -6.21 9.18 -14.32 -0.13 -6.34 16 25 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 26 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.19 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.15 1.62 7.45 -52.49 -0.39 1.23 16 30 H 0.14 1.50 6.16 -52.49 -0.32 1.17 16 31 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 2.66 6.07 -51.93 -0.32 2.35 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.18 1.37 6.30 -52.49 -0.33 1.04 16 LS Contribution 314.28 15.07 4.74 4.74 Total: -1.00 -33.21 314.28 -5.93 -39.14 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -3.81 Total: -1.59 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -1.31 Total: 2.78 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.35 Total: -37.19 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.88 Total: -23.80 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.21 -5.93 -39.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774087043.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.486 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds