Wall clock time and date at job start Tue Mar 31 2020 01:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35324 * 116.99728 * 2 1 4 4 N 1.32467 * 118.98601 * 179.97438 * 3 2 1 5 5 C 1.31997 * 120.94254 * 179.97438 * 4 3 2 6 6 C 1.40311 * 118.95378 * 0.02562 * 5 4 3 7 7 C 1.47010 * 120.91024 * 179.97438 * 6 5 4 8 8 C 1.35050 * 119.99894 * 180.27566 * 7 6 5 9 9 C 1.41801 * 120.00014 * 179.72411 * 8 7 6 10 10 O 1.21643 * 119.99912 * 359.97438 * 9 8 7 11 11 O 1.34934 * 120.00165 * 179.97438 * 9 8 7 12 12 C 1.42894 * 116.99875 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47722 * 329.99984 * 12 11 9 14 14 C 1.53008 * 109.47089 * 89.99825 * 12 11 9 15 15 C 1.50699 * 109.47032 * 209.99590 * 12 11 9 16 16 H 1.07998 * 120.00280 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00098 * 180.02562 * 15 12 11 18 18 N 1.31519 * 120.00069 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00103 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46795 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46954 * 119.99488 * 19 17 15 22 22 H 1.48499 * 109.47030 * 239.99577 * 19 17 15 23 23 C 1.40321 * 118.17957 * 0.24414 * 6 5 4 24 24 N 1.31994 * 118.94593 * 359.51611 * 23 6 5 25 25 H 1.08997 * 109.47390 * 60.00025 * 1 2 3 26 26 H 1.09005 * 109.46816 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47140 * 299.99316 * 1 2 3 28 28 H 1.08002 * 120.52055 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.99702 * 359.97438 * 7 6 5 30 30 H 1.08002 * 120.00342 * 359.71373 * 8 7 6 31 31 H 1.08994 * 109.47095 * 60.00093 * 14 12 11 32 32 H 1.08999 * 109.47131 * 179.97438 * 14 12 11 33 33 H 1.08996 * 109.47098 * 299.99783 * 14 12 11 34 34 H 0.96993 * 120.00089 * 180.02562 * 18 17 15 35 35 H 1.07993 * 120.52346 * 179.73113 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2058 0.0000 4 7 3.3672 1.2517 0.0005 5 6 4.0062 2.4067 0.0000 6 6 3.2608 3.5954 -0.0005 7 6 3.9281 4.9053 -0.0005 8 6 3.1925 6.0379 0.0046 9 6 3.8362 7.3014 0.0105 10 8 5.0510 7.3651 0.0115 11 8 3.1013 8.4330 0.0151 12 6 3.8157 9.6705 0.0215 13 1 4.7677 9.5379 0.5356 14 6 4.0721 10.1189 -1.4187 15 6 3.0006 10.7174 0.7360 16 1 2.0338 10.4631 1.1447 17 6 3.4890 12.0001 0.8679 18 7 4.6665 12.3097 0.3707 19 14 2.4789 13.2977 1.7541 20 1 1.2011 12.6992 2.2172 21 1 3.2409 13.8048 2.9234 22 1 2.1914 14.4205 0.8258 23 6 1.8608 3.4997 0.0048 24 7 1.3023 2.3038 0.0003 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 5.0858 2.4363 0.0009 29 1 5.0066 4.9619 0.0004 30 1 2.1140 5.9814 0.0040 31 1 3.1202 10.2516 -1.9328 32 1 4.6167 11.0630 -1.4138 33 1 4.6617 9.3617 -1.9355 34 1 5.0103 13.2119 0.4638 35 1 1.2502 4.3904 0.0089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774087043.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:43 Heat of formation + Delta-G solvation = -75.363491 kcal Electronic energy + Delta-G solvation = -20113.021634 eV Core-core repulsion = 16690.876281 eV Total energy + Delta-G solvation = -3422.145353 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.36216 -41.36565 -39.53360 -37.87754 -35.66215 -35.27929 -34.99088 -31.96881 -31.04682 -28.56659 -27.45280 -26.46210 -25.65204 -24.06600 -22.38376 -20.73342 -19.93143 -19.47714 -18.65497 -18.42207 -17.51899 -17.20286 -16.77595 -16.50617 -16.28507 -15.76812 -15.50583 -15.09452 -14.87684 -14.68728 -14.25047 -13.97206 -13.26326 -13.22793 -13.01850 -12.92328 -12.80624 -12.64003 -12.40322 -12.35322 -12.15499 -12.13135 -11.53373 -11.46945 -11.44172 -10.92482 -10.57573 -10.36693 -9.50484 -8.26751 -6.43356 -0.90913 -0.06329 0.58913 1.43486 1.44002 1.49000 1.58054 2.10066 2.17488 2.47889 2.67036 2.86900 3.03962 3.34650 3.56463 3.66361 3.73341 4.17456 4.27657 4.37834 4.38589 4.57369 4.58811 4.70497 4.80830 4.85350 4.97677 5.05119 5.18995 5.27062 5.51330 5.53597 5.66650 5.95883 5.98064 6.12757 6.62610 6.86251 7.01141 7.29357 8.81222 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036838 B = 0.002844 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.906886 B = 9842.831021 C =10347.956329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.303 6.303 3 C 0.492 3.508 4 N -0.548 5.548 5 C 0.225 3.775 6 C -0.221 4.221 7 C 0.037 3.963 8 C -0.205 4.205 9 C 0.481 3.519 10 O -0.559 6.559 11 O -0.355 6.355 12 C 0.213 3.787 13 H 0.006 0.994 14 C -0.143 4.143 15 C -0.547 4.547 16 H 0.068 0.932 17 C 0.014 3.986 18 N -0.917 5.917 19 Si 0.983 3.017 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.272 1.272 23 C 0.212 3.788 24 N -0.574 5.574 25 H 0.066 0.934 26 H 0.132 0.868 27 H 0.066 0.934 28 H 0.217 0.783 29 H 0.150 0.850 30 H 0.164 0.836 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.024 0.976 34 H 0.270 0.730 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.466 -21.226 -1.144 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.204 6.204 3 C 0.192 3.808 4 N -0.274 5.274 5 C 0.059 3.941 6 C -0.226 4.226 7 C 0.017 3.983 8 C -0.223 4.223 9 C 0.331 3.669 10 O -0.454 6.454 11 O -0.271 6.271 12 C 0.159 3.841 13 H 0.024 0.976 14 C -0.201 4.201 15 C -0.584 4.584 16 H 0.086 0.914 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.806 3.194 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.198 1.198 23 C 0.046 3.954 24 N -0.303 5.303 25 H 0.085 0.915 26 H 0.150 0.850 27 H 0.084 0.916 28 H 0.234 0.766 29 H 0.167 0.833 30 H 0.181 0.819 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.477 -22.295 -1.170 23.544 hybrid contribution 0.234 1.850 0.290 1.887 sum -7.243 -20.445 -0.880 21.708 Atomic orbital electron populations 1.23315 0.73478 1.05643 1.03201 1.86058 1.25573 1.22659 1.86108 1.21199 0.86627 0.85439 0.87555 1.67666 1.07648 1.31254 1.20802 1.24043 1.02246 0.83917 0.83922 1.20468 0.95757 0.94982 1.11425 1.22108 1.00652 0.88547 0.86998 1.21327 1.02725 0.88182 1.10106 1.20747 0.85941 0.87329 0.72890 1.90800 1.16859 1.89088 1.48679 1.86174 1.42381 1.16059 1.82500 1.19915 0.91874 0.77495 0.94777 0.97577 1.22011 1.00126 1.01746 0.96254 1.21361 1.05049 0.94684 1.37318 0.91398 1.25849 0.96346 1.00301 0.96033 1.70029 1.18867 1.21182 1.45467 0.85135 0.78527 0.77750 0.77987 1.18633 1.20203 1.19752 1.23896 0.92275 0.94883 0.84322 1.68143 1.41086 0.99256 1.21825 0.91538 0.84963 0.91563 0.76643 0.83291 0.81869 0.93612 0.90294 0.95693 0.92060 0.78063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.35 113.37 1.17 1.63 16 2 O -0.30 -6.12 10.55 -86.12 -0.91 -7.03 16 3 C 0.49 10.81 8.48 180.48 1.53 12.34 16 4 N -0.55 -11.84 10.44 -312.18 -3.26 -15.10 16 5 C 0.22 3.65 11.10 85.17 0.95 4.59 16 6 C -0.22 -3.80 5.90 -19.97 -0.12 -3.92 16 7 C 0.04 0.76 9.45 23.84 0.23 0.98 16 8 C -0.20 -5.41 9.35 22.42 0.21 -5.20 16 9 C 0.48 19.43 7.66 68.70 0.53 19.96 16 10 O -0.56 -25.87 15.34 19.37 0.30 -25.57 16 11 O -0.35 -16.87 9.73 -58.50 -0.57 -17.43 16 12 C 0.21 11.73 2.51 29.85 0.07 11.81 16 13 H 0.01 0.40 7.11 -2.39 -0.02 0.38 16 14 C -0.14 -7.41 9.31 71.98 0.67 -6.74 16 15 C -0.55 -31.00 8.89 25.60 0.23 -30.77 16 16 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 17 C 0.01 0.78 5.30 84.65 0.45 1.23 16 18 N -0.92 -52.76 11.32 21.45 0.24 -52.51 16 19 Si 0.98 42.71 29.54 68.60 2.03 44.73 16 20 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 23 C 0.21 3.63 10.68 85.18 0.91 4.54 16 24 N -0.57 -11.45 9.18 -312.18 -2.87 -14.32 16 25 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 26 H 0.13 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 28 H 0.22 1.90 8.06 -2.91 -0.02 1.88 16 29 H 0.15 3.02 7.45 -2.91 -0.02 3.00 16 30 H 0.16 3.26 6.16 -2.91 -0.02 3.25 16 31 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.08 4.38 6.07 -2.39 -0.01 4.36 16 33 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.20 2.46 6.30 -2.91 -0.02 2.44 16 Total: -1.00 -73.30 314.28 2.90 -70.39 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 1.12 Total: 6.39 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 6.82 Total: 10.45 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -5.88 Total: -81.93 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -1.18 Total: -50.03 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -73.30 2.90 -70.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774087043.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.970 kcal (2) G-P(sol) polarization free energy of solvation -73.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds