Wall clock time and date at job start Tue Mar 31 2020 01:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35317 * 117.00486 * 2 1 4 4 N 1.32472 * 118.98973 * 180.02562 * 3 2 1 5 5 C 1.31986 * 120.94446 * 179.97438 * 4 3 2 6 6 C 1.40322 * 118.95724 * 0.02562 * 5 4 3 7 7 C 1.46998 * 120.91458 * 179.97438 * 6 5 4 8 8 C 1.35057 * 119.99874 * 45.94686 * 7 6 5 9 9 C 1.41809 * 119.99826 * 12.36142 * 8 7 6 10 10 O 1.21644 * 120.00261 * 6.70245 * 9 8 7 11 11 O 1.34928 * 119.99631 * 186.70303 * 9 8 7 12 12 C 1.42903 * 116.99834 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47294 * 330.00546 * 12 11 9 14 14 C 1.53004 * 109.46657 * 90.00217 * 12 11 9 15 15 C 1.50695 * 109.47316 * 209.99923 * 12 11 9 16 16 H 1.08004 * 120.00112 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00194 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00526 * 180.02562 * 17 15 12 19 19 Si 1.86801 * 119.99881 * 0.02562 * 17 15 12 20 20 H 1.48494 * 109.47108 * 89.99675 * 19 17 15 21 21 H 1.48498 * 109.47414 * 209.99858 * 19 17 15 22 22 H 1.48508 * 109.47111 * 329.99953 * 19 17 15 23 23 C 1.40315 * 118.17164 * 0.27134 * 6 5 4 24 24 N 1.32001 * 118.95485 * 359.44758 * 23 6 5 25 25 H 1.09005 * 109.47026 * 300.00065 * 1 2 3 26 26 H 1.08997 * 109.47212 * 59.99501 * 1 2 3 27 27 H 1.09004 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.52428 * 179.97438 * 5 4 3 29 29 H 1.07998 * 120.00517 * 225.94574 * 7 6 5 30 30 H 1.08000 * 120.00189 * 192.35538 * 8 7 6 31 31 H 1.08999 * 109.47386 * 60.00511 * 14 12 11 32 32 H 1.09001 * 109.47331 * 299.99764 * 14 12 11 33 33 H 1.09007 * 109.47015 * 180.02562 * 14 12 11 34 34 H 0.96994 * 120.00775 * 180.02562 * 18 17 15 35 35 H 1.08003 * 120.52614 * 179.72928 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2056 0.0000 4 7 3.3673 1.2515 -0.0005 5 6 4.0064 2.4063 -0.0010 6 6 3.2611 3.5953 -0.0005 7 6 3.9285 4.9050 -0.0005 8 6 4.9594 5.1376 -0.8415 9 6 5.2318 4.2305 -1.8969 10 8 4.4679 3.3108 -2.1210 11 8 6.3385 4.3878 -2.6527 12 6 6.5505 3.4370 -3.6983 13 1 6.1164 2.4791 -3.4118 14 6 5.8848 3.9349 -4.9828 15 6 8.0297 3.2686 -3.9318 16 1 8.7372 3.8310 -3.3406 17 6 8.4799 2.3957 -4.8995 18 7 9.7708 2.2483 -5.1030 19 14 7.2562 1.4224 -5.9216 20 1 6.9007 2.1966 -7.1379 21 1 7.8632 0.1268 -6.3194 22 1 6.0317 1.1700 -5.1200 23 6 1.8612 3.4995 0.0064 24 7 1.3024 2.3037 0.0010 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 5.0860 2.4358 -0.0010 29 1 3.5946 5.6813 0.6719 30 1 5.5762 6.0144 -0.7102 31 1 6.3189 4.8928 -5.2693 32 1 4.8149 4.0567 -4.8140 33 1 6.0461 3.2094 -5.7803 34 1 10.0875 1.6345 -5.7840 35 1 1.2505 4.3903 0.0115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774087044.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:46 Heat of formation + Delta-G solvation = -30.648039 kcal Electronic energy + Delta-G solvation = -21301.126340 eV Core-core repulsion = 17880.919994 eV Total energy + Delta-G solvation = -3420.206346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26098 -40.00970 -38.40159 -36.48343 -34.14601 -33.81332 -33.19834 -30.85525 -30.01574 -27.71870 -25.40425 -24.92712 -24.57118 -22.99293 -20.84740 -19.34594 -18.88597 -18.02154 -17.57021 -16.68047 -16.44932 -16.11489 -15.44072 -15.09424 -14.67208 -14.63750 -14.20370 -13.79519 -13.53692 -13.44900 -13.03507 -12.61553 -12.32848 -12.14320 -11.93990 -11.63180 -11.53364 -11.21954 -10.94115 -10.82657 -10.26456 -10.16844 -10.08182 -9.73141 -9.65552 -9.13149 -9.08728 -8.68216 -8.36454 -6.22992 -4.25513 0.39415 1.13564 1.52233 2.54386 3.18863 3.32060 3.34188 3.34951 3.63963 3.78567 3.98343 4.27174 4.46514 4.59067 4.72448 4.89654 5.06254 5.08566 5.09604 5.27346 5.37865 5.46048 5.67634 5.92539 5.97765 6.12535 6.19137 6.29801 6.41588 6.58792 6.70088 7.00951 7.10023 7.33748 7.50126 8.07757 8.18258 8.56422 8.83533 9.34694 10.89091 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.005000 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.267529 B = 5598.724376 C = 6479.460928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.290 6.290 3 C 0.501 3.499 4 N -0.523 5.523 5 C 0.260 3.740 6 C -0.212 4.212 7 C -0.008 4.008 8 C -0.179 4.179 9 C 0.479 3.521 10 O -0.521 6.521 11 O -0.329 6.329 12 C 0.187 3.813 13 H 0.045 0.955 14 C -0.170 4.170 15 C -0.525 4.525 16 H 0.087 0.913 17 C 0.081 3.919 18 N -0.888 5.888 19 Si 0.878 3.122 20 H -0.274 1.274 21 H -0.289 1.289 22 H -0.263 1.263 23 C 0.197 3.803 24 N -0.576 5.576 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.169 0.831 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.055 0.945 34 H 0.269 0.731 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.157 4.248 12.040 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.192 6.192 3 C 0.200 3.800 4 N -0.248 5.248 5 C 0.092 3.908 6 C -0.217 4.217 7 C -0.027 4.027 8 C -0.198 4.198 9 C 0.326 3.674 10 O -0.414 6.414 11 O -0.243 6.243 12 C 0.133 3.867 13 H 0.062 0.938 14 C -0.227 4.227 15 C -0.563 4.563 16 H 0.105 0.895 17 C -0.122 4.122 18 N -0.525 5.525 19 Si 0.707 3.293 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.188 1.188 23 C 0.033 3.967 24 N -0.305 5.305 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.186 0.814 29 H 0.166 0.834 30 H 0.167 0.833 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.625 2.613 11.806 21.374 hybrid contribution -0.309 0.370 -0.991 1.102 sum -17.935 2.983 10.815 21.154 Atomic orbital electron populations 1.22962 0.75937 1.03351 1.02736 1.86054 1.23184 1.23079 1.86833 1.20777 0.86293 0.84593 0.88315 1.67533 1.07205 1.30271 1.19762 1.23183 1.00099 0.84876 0.82647 1.20475 0.95833 0.95664 1.09720 1.22107 0.91724 0.93468 0.95435 1.21667 1.00048 1.02207 0.95918 1.20205 0.80356 0.83754 0.83036 1.90863 1.47526 1.32612 1.70355 1.86244 1.39976 1.54536 1.43583 1.20531 0.97738 0.87327 0.81103 0.93767 1.22545 0.98460 1.02128 0.99558 1.20781 0.88357 1.26070 1.21067 0.89482 1.24717 0.95229 0.95865 0.96387 1.69827 1.12789 1.36608 1.33260 0.86981 0.81761 0.79399 0.81111 1.20084 1.21646 1.18760 1.22972 0.91106 0.94251 0.88339 1.67921 1.41029 0.99178 1.22411 0.91999 0.91941 0.88041 0.81364 0.83418 0.83300 0.91838 0.94620 0.92688 0.92054 0.81191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.45 10.35 101.05 1.05 1.50 16 2 O -0.29 -4.32 10.55 -17.64 -0.19 -4.51 16 3 C 0.50 8.13 8.48 -90.99 -0.77 7.36 16 4 N -0.52 -9.26 10.44 -14.32 -0.15 -9.41 16 5 C 0.26 4.09 8.08 -16.70 -0.13 3.95 16 6 C -0.21 -2.71 4.37 -104.78 -0.46 -3.17 16 7 C -0.01 -0.07 9.84 -37.16 -0.37 -0.44 16 8 C -0.18 -2.23 9.87 -39.35 -0.39 -2.62 16 9 C 0.48 8.81 6.86 32.10 0.22 9.03 16 10 O -0.52 -10.75 11.53 -19.37 -0.22 -10.97 16 11 O -0.33 -7.24 9.73 -41.12 -0.40 -7.64 16 12 C 0.19 4.71 2.10 -27.88 -0.06 4.65 16 13 H 0.04 1.19 6.17 -51.93 -0.32 0.86 16 14 C -0.17 -3.90 9.01 37.16 0.33 -3.57 16 15 C -0.53 -15.03 9.47 -34.44 -0.33 -15.36 16 16 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 17 C 0.08 2.35 5.45 -17.82 -0.10 2.25 16 18 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 19 Si 0.88 22.10 24.37 -169.99 -4.14 17.95 16 20 H -0.27 -6.61 6.87 56.52 0.39 -6.22 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.26 -6.62 6.53 56.52 0.37 -6.25 16 23 C 0.20 2.33 11.10 -16.70 -0.19 2.14 16 24 N -0.58 -8.08 9.18 -14.32 -0.13 -8.21 16 25 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 26 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.17 2.58 7.40 -52.49 -0.39 2.19 16 29 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 30 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 1.30 3.27 -51.92 -0.17 1.13 16 34 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.17 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 303.23 15.07 4.57 4.57 Total: -1.00 -35.04 303.23 -4.94 -39.97 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -3.86 Total: -1.45 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.18 Total: 5.73 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.49 Total: -43.66 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.81 Total: -23.12 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.14 Total: 17.95 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.04 -4.94 -39.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774087044.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.325 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds