Wall clock time and date at job start Tue Mar 31 2020 01:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35317 * 117.00486 * 2 1 4 4 N 1.32472 * 118.98973 * 180.02562 * 3 2 1 5 5 C 1.31986 * 120.94446 * 179.97438 * 4 3 2 6 6 C 1.40322 * 118.95724 * 0.02562 * 5 4 3 7 7 C 1.46998 * 120.91458 * 179.97438 * 6 5 4 8 8 C 1.35057 * 119.99874 * 45.94686 * 7 6 5 9 9 C 1.41809 * 119.99826 * 12.36142 * 8 7 6 10 10 O 1.21644 * 120.00261 * 6.70245 * 9 8 7 11 11 O 1.34928 * 119.99631 * 186.70303 * 9 8 7 12 12 C 1.42903 * 116.99834 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47294 * 330.00546 * 12 11 9 14 14 C 1.53004 * 109.46657 * 90.00217 * 12 11 9 15 15 C 1.50695 * 109.47316 * 209.99923 * 12 11 9 16 16 H 1.08004 * 120.00112 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00194 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00526 * 180.02562 * 17 15 12 19 19 Si 1.86801 * 119.99881 * 0.02562 * 17 15 12 20 20 H 1.48494 * 109.47108 * 89.99675 * 19 17 15 21 21 H 1.48498 * 109.47414 * 209.99858 * 19 17 15 22 22 H 1.48508 * 109.47111 * 329.99953 * 19 17 15 23 23 C 1.40315 * 118.17164 * 0.27134 * 6 5 4 24 24 N 1.32001 * 118.95485 * 359.44758 * 23 6 5 25 25 H 1.09005 * 109.47026 * 300.00065 * 1 2 3 26 26 H 1.08997 * 109.47212 * 59.99501 * 1 2 3 27 27 H 1.09004 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.52428 * 179.97438 * 5 4 3 29 29 H 1.07998 * 120.00517 * 225.94574 * 7 6 5 30 30 H 1.08000 * 120.00189 * 192.35538 * 8 7 6 31 31 H 1.08999 * 109.47386 * 60.00511 * 14 12 11 32 32 H 1.09001 * 109.47331 * 299.99764 * 14 12 11 33 33 H 1.09007 * 109.47015 * 180.02562 * 14 12 11 34 34 H 0.96994 * 120.00775 * 180.02562 * 18 17 15 35 35 H 1.08003 * 120.52614 * 179.72928 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2056 0.0000 4 7 3.3673 1.2515 -0.0005 5 6 4.0064 2.4063 -0.0010 6 6 3.2611 3.5953 -0.0005 7 6 3.9285 4.9050 -0.0005 8 6 4.9594 5.1376 -0.8415 9 6 5.2318 4.2305 -1.8969 10 8 4.4679 3.3108 -2.1210 11 8 6.3385 4.3878 -2.6527 12 6 6.5505 3.4370 -3.6983 13 1 6.1164 2.4791 -3.4118 14 6 5.8848 3.9349 -4.9828 15 6 8.0297 3.2686 -3.9318 16 1 8.7372 3.8310 -3.3406 17 6 8.4799 2.3957 -4.8995 18 7 9.7708 2.2483 -5.1030 19 14 7.2562 1.4224 -5.9216 20 1 6.9007 2.1966 -7.1379 21 1 7.8632 0.1268 -6.3194 22 1 6.0317 1.1700 -5.1200 23 6 1.8612 3.4995 0.0064 24 7 1.3024 2.3037 0.0010 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 5.0860 2.4358 -0.0010 29 1 3.5946 5.6813 0.6719 30 1 5.5762 6.0144 -0.7102 31 1 6.3189 4.8928 -5.2693 32 1 4.8149 4.0567 -4.8140 33 1 6.0461 3.2094 -5.7803 34 1 10.0875 1.6345 -5.7840 35 1 1.2505 4.3903 0.0115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774087044.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:45 Heat of formation + Delta-G solvation = -58.642234 kcal Electronic energy + Delta-G solvation = -21302.340259 eV Core-core repulsion = 17880.919994 eV Total energy + Delta-G solvation = -3421.420265 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.36726 -41.45532 -39.48049 -38.03476 -35.28446 -35.25514 -34.91137 -32.73929 -31.18490 -28.59298 -27.39734 -26.19797 -25.63053 -24.28853 -22.52057 -20.72593 -19.91206 -19.15661 -19.06723 -18.60821 -17.76318 -17.43283 -16.91308 -16.63553 -16.00858 -15.62157 -15.22273 -15.20497 -14.82867 -14.67277 -14.46781 -14.25294 -14.16662 -13.68277 -13.43947 -12.92979 -12.90337 -12.51171 -12.27925 -12.26119 -12.00113 -11.75804 -11.62372 -11.36835 -11.18436 -11.11718 -10.82869 -10.20377 -9.40995 -8.47091 -6.54698 -0.65540 0.09287 0.45981 1.18248 1.27357 1.35676 1.56594 2.07734 2.16086 2.21238 2.70540 2.86251 3.01479 3.51570 3.58616 3.75413 3.91757 4.08647 4.24635 4.35738 4.36272 4.38153 4.51610 4.59284 4.65597 4.69662 4.73276 5.00046 5.05053 5.18213 5.30794 5.37094 5.64482 5.70728 6.08720 6.15629 6.49644 6.93514 6.98905 7.11839 8.68982 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.005000 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.267529 B = 5598.724376 C = 6479.460928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.314 6.314 3 C 0.484 3.516 4 N -0.567 5.567 5 C 0.235 3.765 6 C -0.219 4.219 7 C 0.045 3.955 8 C -0.207 4.207 9 C 0.474 3.526 10 O -0.551 6.551 11 O -0.346 6.346 12 C 0.194 3.806 13 H 0.022 0.978 14 C -0.162 4.162 15 C -0.537 4.537 16 H 0.050 0.950 17 C 0.034 3.966 18 N -0.928 5.928 19 Si 0.937 3.063 20 H -0.250 1.250 21 H -0.283 1.283 22 H -0.267 1.267 23 C 0.206 3.794 24 N -0.574 5.574 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.129 0.871 28 H 0.156 0.844 29 H 0.213 0.787 30 H 0.179 0.821 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.275 0.725 35 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.127 6.002 12.654 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.216 6.216 3 C 0.183 3.817 4 N -0.293 5.293 5 C 0.069 3.931 6 C -0.223 4.223 7 C 0.026 3.974 8 C -0.226 4.226 9 C 0.324 3.676 10 O -0.445 6.445 11 O -0.262 6.262 12 C 0.139 3.861 13 H 0.040 0.960 14 C -0.220 4.220 15 C -0.575 4.575 16 H 0.068 0.932 17 C -0.166 4.166 18 N -0.567 5.567 19 Si 0.763 3.237 20 H -0.176 1.176 21 H -0.210 1.210 22 H -0.192 1.192 23 C 0.042 3.958 24 N -0.304 5.304 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.147 0.853 28 H 0.173 0.827 29 H 0.230 0.770 30 H 0.197 0.803 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -20.602 4.385 12.433 24.459 hybrid contribution 0.536 -0.178 -1.011 1.158 sum -20.066 4.207 11.422 23.469 Atomic orbital electron populations 1.23267 0.73558 1.05386 1.03110 1.86024 1.25618 1.23153 1.86760 1.20979 0.86165 0.85606 0.88948 1.67395 1.08632 1.31832 1.21433 1.23196 1.00005 0.85971 0.83896 1.20818 0.96562 0.96013 1.08956 1.22711 0.88385 0.92634 0.93706 1.21751 1.02498 1.02517 0.95826 1.21272 0.78714 0.84222 0.83388 1.90863 1.48190 1.34202 1.71230 1.86221 1.42475 1.53760 1.43706 1.20101 0.95279 0.87520 0.83200 0.95990 1.22416 0.99396 1.02191 0.97953 1.20993 0.90088 1.25750 1.20651 0.93155 1.25481 0.96873 0.96709 0.97524 1.69940 1.14663 1.37722 1.34346 0.86033 0.79171 0.78339 0.80149 1.17564 1.21011 1.19157 1.23866 0.91131 0.95016 0.85803 1.68045 1.40596 0.99434 1.22299 0.90954 0.92081 0.85283 0.82665 0.77008 0.80345 0.90999 0.92796 0.93184 0.91552 0.76028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.35 113.37 1.17 1.93 16 2 O -0.31 -9.36 10.55 -86.05 -0.91 -10.26 16 3 C 0.48 15.63 8.48 180.48 1.53 17.16 16 4 N -0.57 -20.62 10.44 -312.18 -3.26 -23.88 16 5 C 0.24 7.46 8.08 85.18 0.69 8.14 16 6 C -0.22 -4.99 4.37 -19.97 -0.09 -5.08 16 7 C 0.04 0.66 9.84 23.84 0.23 0.89 16 8 C -0.21 -4.53 9.87 22.42 0.22 -4.31 16 9 C 0.47 17.15 6.86 68.70 0.47 17.62 16 10 O -0.55 -22.71 11.53 19.37 0.22 -22.48 16 11 O -0.35 -15.44 9.73 -58.43 -0.57 -16.01 16 12 C 0.19 9.93 2.10 29.85 0.06 9.99 16 13 H 0.02 1.23 6.17 -2.39 -0.01 1.21 16 14 C -0.16 -7.33 9.01 71.98 0.65 -6.68 16 15 C -0.54 -31.85 9.47 25.60 0.24 -31.61 16 16 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 17 C 0.03 2.01 5.45 84.66 0.46 2.47 16 18 N -0.93 -57.47 13.96 21.45 0.30 -57.17 16 19 Si 0.94 45.89 24.37 68.60 1.67 47.57 16 20 H -0.25 -11.28 6.87 99.48 0.68 -10.59 16 21 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.27 -13.14 6.53 99.48 0.65 -12.49 16 23 C 0.21 4.07 11.10 85.17 0.95 5.02 16 24 N -0.57 -14.92 9.18 -312.18 -2.87 -17.78 16 25 H 0.07 1.15 8.09 -2.38 -0.02 1.13 16 26 H 0.06 1.12 8.09 -2.39 -0.02 1.10 16 27 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.16 5.05 7.40 -2.91 -0.02 5.02 16 29 H 0.21 0.51 8.06 -2.91 -0.02 0.49 16 30 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.05 2.28 3.27 -2.38 -0.01 2.28 16 34 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 35 H 0.22 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -81.62 303.23 2.22 -79.40 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 1.03 Total: 5.08 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 6.59 Total: 15.54 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -5.83 Total: -98.83 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -1.25 Total: -48.75 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.67 Total: 47.57 kcal Total: -81.62 2.22 -79.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774087044.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.760 kcal (2) G-P(sol) polarization free energy of solvation -81.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds