Wall clock time and date at job start Tue Mar 31 2020 01:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35322 * 116.99311 * 2 1 4 4 N 1.32475 * 118.98367 * 179.97438 * 3 2 1 5 5 C 1.31989 * 120.94829 * 179.97438 * 4 3 2 6 6 C 1.40320 * 118.95250 * 0.02562 * 5 4 3 7 7 C 1.47003 * 120.91575 * 179.97438 * 6 5 4 8 8 C 1.35050 * 119.99908 * 136.44356 * 7 6 5 9 9 C 1.41803 * 120.00424 * 348.65595 * 8 7 6 10 10 O 1.21650 * 119.99833 * 353.14704 * 9 8 7 11 11 O 1.34922 * 120.00399 * 173.15080 * 9 8 7 12 12 C 1.42902 * 117.00112 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47127 * 29.99608 * 12 11 9 14 14 C 1.53007 * 109.46898 * 269.99901 * 12 11 9 15 15 C 1.50699 * 109.47146 * 150.00114 * 12 11 9 16 16 H 1.07995 * 120.00245 * 359.97438 * 15 12 11 17 17 C 1.37874 * 119.99880 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99949 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00091 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.46837 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47401 * 120.00104 * 19 17 15 22 22 H 1.48505 * 109.47180 * 240.00204 * 19 17 15 23 23 C 1.40320 * 118.17501 * 0.27209 * 6 5 4 24 24 N 1.32002 * 118.95120 * 359.44351 * 23 6 5 25 25 H 1.08992 * 109.47287 * 300.00287 * 1 2 3 26 26 H 1.08994 * 109.46866 * 60.00503 * 1 2 3 27 27 H 1.09008 * 109.46729 * 180.02562 * 1 2 3 28 28 H 1.07993 * 120.52734 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.99406 * 316.45131 * 7 6 5 30 30 H 1.07997 * 119.99566 * 168.64997 * 8 7 6 31 31 H 1.09007 * 109.46927 * 299.99791 * 14 12 11 32 32 H 1.08997 * 109.47045 * 59.99523 * 14 12 11 33 33 H 1.08996 * 109.47033 * 179.97438 * 14 12 11 34 34 H 0.97008 * 119.99828 * 180.02562 * 18 17 15 35 35 H 1.07997 * 120.52338 * 179.73067 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0433 1.2058 0.0000 4 7 3.3672 1.2518 0.0005 5 6 4.0063 2.4067 0.0000 6 6 3.2608 3.5955 -0.0005 7 6 3.9281 4.9054 -0.0005 8 6 3.4796 5.8916 -0.8068 9 6 2.5307 5.6027 -1.8201 10 8 2.2140 4.4501 -2.0460 11 8 1.9791 6.6061 -2.5338 12 6 1.0302 6.2423 -3.5384 13 1 0.5170 5.3283 -3.2395 14 6 1.7560 6.0090 -4.8650 15 6 0.0242 7.3520 -3.7046 16 1 0.1015 8.2455 -3.1029 17 6 -0.9949 7.2265 -4.6247 18 7 -1.0893 6.1382 -5.3570 19 14 -2.2415 8.6023 -4.8312 20 1 -1.9166 9.7091 -3.8959 21 1 -2.1973 9.1048 -6.2279 22 1 -3.6019 8.0865 -4.5335 23 6 1.8609 3.4997 0.0054 24 7 1.3022 2.3038 -0.0001 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 5.0858 2.4363 0.0009 29 1 4.7770 5.0789 0.6443 30 1 3.8437 6.9004 -0.6797 31 1 2.2692 6.9231 -5.1640 32 1 2.4837 5.2065 -4.7448 33 1 1.0322 5.7311 -5.6311 34 1 -1.8061 6.0501 -6.0047 35 1 1.2502 4.3904 0.0096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774087045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:48 Heat of formation + Delta-G solvation = -39.557138 kcal Electronic energy + Delta-G solvation = -21295.269937 eV Core-core repulsion = 17874.677264 eV Total energy + Delta-G solvation = -3420.592673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.15708 -39.82851 -38.26678 -36.29669 -33.98737 -33.71225 -33.27278 -30.40803 -29.39594 -27.49274 -25.38977 -25.05318 -24.28387 -22.84818 -20.78093 -19.18602 -18.76671 -17.94039 -17.29327 -16.71039 -16.31278 -15.71204 -15.25865 -14.90028 -14.61764 -14.44498 -14.12901 -13.74571 -13.49517 -13.30295 -12.81619 -12.26130 -11.99876 -11.90694 -11.46374 -11.29065 -11.12355 -11.06482 -10.88233 -10.75957 -10.37297 -10.30090 -10.11084 -9.84208 -9.51560 -9.00547 -8.89979 -8.51071 -8.21622 -6.20430 -4.27791 0.48024 1.24242 1.67305 2.64414 3.21734 3.28632 3.33339 3.48900 3.81014 3.89331 4.17253 4.33417 4.57655 4.65084 4.79598 4.99920 5.12747 5.22087 5.29137 5.42048 5.56104 5.62232 5.82045 5.98786 6.16005 6.32969 6.61159 6.78821 6.86309 6.89113 7.11703 7.24176 7.57007 7.69566 7.89481 8.11238 8.16801 8.58000 8.85745 9.38260 10.86960 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019812 B = 0.004729 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.920371 B = 5918.911153 C = 6807.998553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.293 6.293 3 C 0.502 3.498 4 N -0.535 5.535 5 C 0.198 3.802 6 C -0.217 4.217 7 C -0.009 4.009 8 C -0.181 4.181 9 C 0.479 3.521 10 O -0.520 6.520 11 O -0.343 6.343 12 C 0.211 3.789 13 H 0.045 0.955 14 C -0.155 4.155 15 C -0.521 4.521 16 H 0.069 0.931 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.911 3.089 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.268 3.732 24 N -0.568 5.568 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.175 0.825 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.036 0.964 32 H 0.014 0.986 33 H 0.098 0.902 34 H 0.265 0.735 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 -4.994 12.118 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.194 6.194 3 C 0.201 3.799 4 N -0.261 5.261 5 C 0.034 3.966 6 C -0.223 4.223 7 C -0.029 4.029 8 C -0.200 4.200 9 C 0.326 3.674 10 O -0.413 6.413 11 O -0.258 6.258 12 C 0.158 3.842 13 H 0.062 0.938 14 C -0.213 4.213 15 C -0.559 4.559 16 H 0.087 0.913 17 C -0.140 4.140 18 N -0.526 5.526 19 Si 0.738 3.262 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.208 1.208 23 C 0.102 3.898 24 N -0.297 5.297 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.119 0.881 28 H 0.192 0.808 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.055 0.945 32 H 0.033 0.967 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.286 -6.635 11.841 15.405 hybrid contribution -0.539 1.595 -0.542 1.768 sum 6.747 -5.040 11.299 14.092 Atomic orbital electron populations 1.22996 0.75644 1.03274 1.03243 1.86004 1.23453 1.23098 1.86860 1.20773 0.86185 0.84781 0.88187 1.67444 1.07413 1.30186 1.21042 1.23112 1.00026 0.85028 0.88455 1.20457 0.95826 0.95614 1.10356 1.22092 0.95850 0.89719 0.95209 1.21683 1.00446 1.01089 0.96830 1.20129 0.80615 0.84379 0.82295 1.90842 1.60562 1.21782 1.68119 1.86221 1.54469 1.37649 1.47497 1.20229 0.84391 0.97964 0.81580 0.93752 1.22177 0.99751 0.98007 1.01332 1.21063 1.09688 1.03165 1.21945 0.91277 1.24897 0.97622 0.96374 0.95083 1.69917 1.32589 1.26483 1.23620 0.86235 0.80483 0.81410 0.78114 1.19445 1.20710 1.20750 1.22998 0.91256 0.93944 0.81649 1.68004 1.40892 0.99095 1.21729 0.91928 0.91500 0.88063 0.80809 0.83572 0.83594 0.94489 0.96685 0.88397 0.92470 0.81940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.35 101.05 1.05 1.57 16 2 O -0.29 -4.57 10.55 -17.66 -0.19 -4.76 16 3 C 0.50 8.56 8.48 -90.99 -0.77 7.79 16 4 N -0.54 -8.63 10.44 -14.32 -0.15 -8.78 16 5 C 0.20 2.60 11.10 -16.70 -0.19 2.41 16 6 C -0.22 -2.99 4.49 -104.78 -0.47 -3.46 16 7 C -0.01 -0.10 9.85 -37.16 -0.37 -0.46 16 8 C -0.18 -2.42 9.88 -39.35 -0.39 -2.81 16 9 C 0.48 9.31 6.78 32.09 0.22 9.52 16 10 O -0.52 -11.36 11.27 -19.38 -0.22 -11.58 16 11 O -0.34 -7.89 9.73 -41.10 -0.40 -8.29 16 12 C 0.21 5.61 2.51 -27.88 -0.07 5.54 16 13 H 0.04 1.30 7.11 -51.93 -0.37 0.93 16 14 C -0.15 -3.95 9.31 37.16 0.35 -3.61 16 15 C -0.52 -14.47 8.89 -34.44 -0.31 -14.78 16 16 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 19 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.27 4.37 7.95 -16.70 -0.13 4.24 16 24 N -0.57 -9.85 9.18 -14.32 -0.13 -9.99 16 25 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 27 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 28 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 2.68 6.07 -51.93 -0.32 2.37 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.16 2.63 7.14 -52.49 -0.37 2.26 16 LS Contribution 309.46 15.07 4.66 4.66 Total: -1.00 -33.56 309.46 -5.97 -39.54 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -3.98 Total: 0.38 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -1.18 Total: 7.57 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.35 Total: -43.44 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.80 Total: -24.63 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.56 -5.97 -39.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774087045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.021 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds