Wall clock time and date at job start Tue Mar 31 2020 01:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35322 * 116.99311 * 2 1 4 4 N 1.32475 * 118.98367 * 179.97438 * 3 2 1 5 5 C 1.31989 * 120.94829 * 179.97438 * 4 3 2 6 6 C 1.40320 * 118.95250 * 0.02562 * 5 4 3 7 7 C 1.47003 * 120.91575 * 179.97438 * 6 5 4 8 8 C 1.35050 * 119.99908 * 136.44356 * 7 6 5 9 9 C 1.41803 * 120.00424 * 348.65595 * 8 7 6 10 10 O 1.21650 * 119.99833 * 353.14704 * 9 8 7 11 11 O 1.34922 * 120.00399 * 173.15080 * 9 8 7 12 12 C 1.42902 * 117.00112 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47127 * 29.99608 * 12 11 9 14 14 C 1.53007 * 109.46898 * 269.99901 * 12 11 9 15 15 C 1.50699 * 109.47146 * 150.00114 * 12 11 9 16 16 H 1.07995 * 120.00245 * 359.97438 * 15 12 11 17 17 C 1.37874 * 119.99880 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99949 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00091 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.46837 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47401 * 120.00104 * 19 17 15 22 22 H 1.48505 * 109.47180 * 240.00204 * 19 17 15 23 23 C 1.40320 * 118.17501 * 0.27209 * 6 5 4 24 24 N 1.32002 * 118.95120 * 359.44351 * 23 6 5 25 25 H 1.08992 * 109.47287 * 300.00287 * 1 2 3 26 26 H 1.08994 * 109.46866 * 60.00503 * 1 2 3 27 27 H 1.09008 * 109.46729 * 180.02562 * 1 2 3 28 28 H 1.07993 * 120.52734 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.99406 * 316.45131 * 7 6 5 30 30 H 1.07997 * 119.99566 * 168.64997 * 8 7 6 31 31 H 1.09007 * 109.46927 * 299.99791 * 14 12 11 32 32 H 1.08997 * 109.47045 * 59.99523 * 14 12 11 33 33 H 1.08996 * 109.47033 * 179.97438 * 14 12 11 34 34 H 0.97008 * 119.99828 * 180.02562 * 18 17 15 35 35 H 1.07997 * 120.52338 * 179.73067 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0433 1.2058 0.0000 4 7 3.3672 1.2518 0.0005 5 6 4.0063 2.4067 0.0000 6 6 3.2608 3.5955 -0.0005 7 6 3.9281 4.9054 -0.0005 8 6 3.4796 5.8916 -0.8068 9 6 2.5307 5.6027 -1.8201 10 8 2.2140 4.4501 -2.0460 11 8 1.9791 6.6061 -2.5338 12 6 1.0302 6.2423 -3.5384 13 1 0.5170 5.3283 -3.2395 14 6 1.7560 6.0090 -4.8650 15 6 0.0242 7.3520 -3.7046 16 1 0.1015 8.2455 -3.1029 17 6 -0.9949 7.2265 -4.6247 18 7 -1.0893 6.1382 -5.3570 19 14 -2.2415 8.6023 -4.8312 20 1 -1.9166 9.7091 -3.8959 21 1 -2.1973 9.1048 -6.2279 22 1 -3.6019 8.0865 -4.5335 23 6 1.8609 3.4997 0.0054 24 7 1.3022 2.3038 -0.0001 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 5.0858 2.4363 0.0009 29 1 4.7770 5.0789 0.6443 30 1 3.8437 6.9004 -0.6797 31 1 2.2692 6.9231 -5.1640 32 1 2.4837 5.2065 -4.7448 33 1 1.0322 5.7311 -5.6311 34 1 -1.8061 6.0501 -6.0047 35 1 1.2502 4.3904 0.0096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774087045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:47 Heat of formation + Delta-G solvation = -64.663167 kcal Electronic energy + Delta-G solvation = -21296.358616 eV Core-core repulsion = 17874.677264 eV Total energy + Delta-G solvation = -3421.681352 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.36291 -41.36554 -39.45489 -37.94396 -35.32850 -35.19899 -34.90221 -31.96512 -31.02353 -28.55173 -27.49331 -26.33410 -25.49108 -24.20795 -22.53573 -20.63955 -19.91552 -19.13402 -18.81683 -18.61520 -17.54680 -17.33487 -16.81148 -16.47071 -16.08568 -15.55941 -15.31185 -15.09937 -14.72370 -14.47723 -14.36627 -14.09108 -13.73419 -13.23501 -13.03800 -12.96546 -12.84830 -12.55648 -12.42233 -12.20993 -12.15620 -11.97052 -11.53675 -11.36551 -11.13249 -10.93741 -10.60327 -10.20226 -9.36926 -8.30005 -6.47068 -0.66071 0.09971 0.51924 1.40726 1.41230 1.55452 1.55859 2.12299 2.21083 2.51769 2.71113 2.99507 3.01147 3.51228 3.66661 3.72509 3.95692 4.20098 4.29517 4.33385 4.50818 4.58919 4.63268 4.67217 4.74679 4.82335 4.99345 5.08944 5.14359 5.38499 5.48145 5.62129 5.63810 5.92816 6.07239 6.11891 6.59972 6.98088 7.01539 7.26738 8.77845 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019812 B = 0.004729 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.920371 B = 5918.911153 C = 6807.998553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.305 6.305 3 C 0.483 3.517 4 N -0.551 5.551 5 C 0.206 3.794 6 C -0.224 4.224 7 C 0.042 3.958 8 C -0.208 4.208 9 C 0.471 3.529 10 O -0.554 6.554 11 O -0.355 6.355 12 C 0.219 3.781 13 H 0.002 0.998 14 C -0.142 4.142 15 C -0.545 4.545 16 H 0.069 0.931 17 C 0.014 3.986 18 N -0.920 5.920 19 Si 0.982 3.018 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.277 1.277 23 C 0.244 3.756 24 N -0.592 5.592 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.138 0.862 28 H 0.226 0.774 29 H 0.214 0.786 30 H 0.180 0.820 31 H 0.045 0.955 32 H 0.019 0.981 33 H 0.075 0.925 34 H 0.269 0.731 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.791 -3.946 13.452 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.206 6.206 3 C 0.182 3.818 4 N -0.278 5.278 5 C 0.042 3.958 6 C -0.228 4.228 7 C 0.023 3.977 8 C -0.226 4.226 9 C 0.321 3.679 10 O -0.449 6.449 11 O -0.271 6.271 12 C 0.165 3.835 13 H 0.020 0.980 14 C -0.200 4.200 15 C -0.583 4.583 16 H 0.087 0.913 17 C -0.185 4.185 18 N -0.558 5.558 19 Si 0.805 3.195 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.203 1.203 23 C 0.078 3.922 24 N -0.322 5.322 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.156 0.844 28 H 0.243 0.757 29 H 0.230 0.770 30 H 0.197 0.803 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.115 -5.583 13.194 16.981 hybrid contribution -1.060 1.126 -0.871 1.775 sum 8.055 -4.457 12.323 15.382 Atomic orbital electron populations 1.23205 0.74152 1.05427 1.02444 1.85994 1.25006 1.22833 1.86809 1.21061 0.86843 0.85038 0.88906 1.67549 1.06964 1.31726 1.21515 1.23989 1.02039 0.83711 0.86090 1.20831 0.94824 0.97784 1.09411 1.22716 0.95136 0.86532 0.93288 1.21766 1.00275 1.03680 0.96888 1.21278 0.80599 0.83331 0.82650 1.90846 1.61996 1.22838 1.69209 1.86194 1.54300 1.39121 1.47516 1.19803 0.85099 0.95896 0.82720 0.98034 1.21992 0.99099 0.98434 1.00426 1.21363 1.10837 1.03506 1.22581 0.91289 1.25858 0.99413 0.98870 0.94366 1.70047 1.33331 1.28387 1.24012 0.85142 0.77545 0.78287 0.78492 1.18411 1.19749 1.20267 1.23057 0.92914 0.93346 0.82844 1.67920 1.41853 0.99730 1.22670 0.91553 0.93437 0.84399 0.75738 0.76978 0.80262 0.93559 0.96239 0.90590 0.92147 0.83203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.04 10.35 113.37 1.17 2.21 16 2 O -0.30 -9.70 10.55 -86.09 -0.91 -10.61 16 3 C 0.48 16.71 8.48 180.48 1.53 18.24 16 4 N -0.55 -17.17 10.44 -312.18 -3.26 -20.43 16 5 C 0.21 4.78 11.10 85.18 0.95 5.73 16 6 C -0.22 -5.65 4.49 -19.97 -0.09 -5.74 16 7 C 0.04 0.71 9.85 23.84 0.23 0.95 16 8 C -0.21 -4.95 9.88 22.42 0.22 -4.73 16 9 C 0.47 18.39 6.78 68.70 0.47 18.85 16 10 O -0.55 -24.95 11.27 19.35 0.22 -24.73 16 11 O -0.36 -16.68 9.73 -58.38 -0.57 -17.25 16 12 C 0.22 12.07 2.51 29.85 0.07 12.14 16 13 H 0.00 0.12 7.11 -2.39 -0.02 0.10 16 14 C -0.14 -7.45 9.31 71.98 0.67 -6.78 16 15 C -0.55 -31.02 8.89 25.60 0.23 -30.79 16 16 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 17 C 0.01 0.79 5.30 84.65 0.45 1.24 16 18 N -0.92 -53.75 11.32 21.45 0.24 -53.50 16 19 Si 0.98 43.03 29.54 68.60 2.03 45.06 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 23 C 0.24 8.10 7.95 85.17 0.68 8.78 16 24 N -0.59 -21.33 9.18 -312.17 -2.87 -24.20 16 25 H 0.07 1.53 8.09 -2.39 -0.02 1.51 16 26 H 0.05 1.32 8.09 -2.39 -0.02 1.30 16 27 H 0.14 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.23 2.70 8.06 -2.91 -0.02 2.67 16 29 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16 30 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 31 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 4.32 6.07 -2.39 -0.01 4.31 16 34 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 35 H 0.15 5.16 7.14 -2.91 -0.02 5.14 16 Total: -1.00 -78.21 309.46 2.57 -75.64 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.11 Total: 9.94 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 6.58 Total: 20.09 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -5.88 Total: -98.14 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -1.26 Total: -52.59 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -78.21 2.57 -75.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774087045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.977 kcal (2) G-P(sol) polarization free energy of solvation -78.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds