Wall clock time and date at job start Mon Mar 30 2020 23:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47079 * 2 1 4 4 C 1.38623 * 120.75294 * 269.97624 * 3 2 1 5 5 C 1.38586 * 119.35967 * 180.02562 * 4 3 2 6 6 N 1.31503 * 120.90383 * 0.02562 * 5 4 3 7 7 C 1.32750 * 121.64176 * 359.72986 * 6 5 4 8 8 C 1.48074 * 119.72701 * 180.28717 * 7 6 5 9 9 O 1.21428 * 119.99814 * 180.24087 * 8 7 6 10 10 O 1.34678 * 120.00203 * 0.24867 * 8 7 6 11 11 C 1.45201 * 117.00198 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.46911 * 179.97438 * 11 10 8 13 13 O 1.21293 * 120.00072 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99375 * 179.97438 * 12 11 10 15 15 C 1.37105 * 119.99738 * 179.97438 * 14 12 11 16 16 H 1.08005 * 119.99802 * 359.97438 * 15 14 12 17 17 C 1.38943 * 120.00280 * 179.97438 * 15 14 12 18 18 N 1.31417 * 119.99781 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00200 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47107 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47240 * 120.00118 * 19 17 15 22 22 H 1.48503 * 109.47111 * 240.00227 * 19 17 15 23 23 C 1.38592 * 120.75626 * 90.00124 * 3 2 1 24 24 H 1.08995 * 109.47138 * 299.99897 * 1 2 3 25 25 H 1.08996 * 109.46783 * 60.00603 * 1 2 3 26 26 H 1.08999 * 109.47021 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47579 * 239.99947 * 2 1 3 28 28 H 1.09000 * 109.47080 * 120.00087 * 2 1 3 29 29 H 1.07999 * 120.32180 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.55304 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.46407 * 299.99522 * 11 10 8 32 32 H 1.08994 * 109.47157 * 59.99381 * 11 10 8 33 33 H 0.96994 * 120.00604 * 359.97438 * 14 12 11 34 34 H 0.97005 * 119.99780 * 179.97438 * 18 17 15 35 35 H 1.08002 * 120.46872 * 359.94953 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2691 2.0889 -1.1913 5 6 2.7314 3.3950 -1.1576 6 7 2.9478 4.0055 -0.0132 7 6 2.7294 3.4034 1.1496 8 6 2.9814 4.1332 2.4131 9 8 2.7874 3.5857 3.4795 10 8 3.4257 5.4041 2.3796 11 6 3.6516 6.0574 3.6566 12 6 4.1437 7.4623 3.4219 13 8 4.2901 7.8725 2.2899 14 7 4.4211 8.2629 4.4700 15 6 4.8694 9.5409 4.2567 16 1 5.0005 9.9059 3.2486 17 6 5.1549 10.3665 5.3371 18 7 4.9957 9.9222 6.5636 19 14 5.7662 12.1075 5.0463 20 1 5.8600 12.3618 3.5863 21 1 4.8178 13.0736 5.6567 22 1 7.1063 12.2713 5.6649 23 6 2.2686 2.0890 1.1910 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.0957 1.5962 -2.1366 30 1 2.9173 3.9183 -2.0838 31 1 2.7184 6.0880 4.2190 32 1 4.3987 5.5008 4.2223 33 1 4.3037 7.9350 5.3753 34 1 5.1954 10.4985 7.3179 35 1 2.0946 1.5991 2.1376 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775098689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:59 Heat of formation + Delta-G solvation = -90.695949 kcal Electronic energy + Delta-G solvation = -20186.684135 eV Core-core repulsion = 16763.873917 eV Total energy + Delta-G solvation = -3422.810219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91808 -39.71045 -38.04681 -36.10216 -35.36952 -33.94372 -31.81001 -31.31821 -30.72873 -28.44208 -25.45176 -24.77151 -24.13238 -22.54010 -20.67511 -19.52792 -18.03702 -17.94328 -17.10190 -16.34749 -16.31403 -16.18539 -15.61694 -15.03859 -14.59522 -14.48762 -14.16112 -14.01472 -13.90956 -13.61656 -13.03216 -12.81842 -12.34843 -12.23960 -11.92610 -11.90870 -11.58250 -11.42685 -11.11732 -10.73846 -10.37591 -10.35133 -10.26073 -9.89728 -9.71263 -9.56829 -9.49629 -8.45506 -8.03067 -6.45518 -3.87147 0.33659 0.93169 2.39774 2.58169 3.15276 3.26789 3.34732 3.61004 3.79687 3.97564 4.13920 4.24167 4.39353 4.65063 4.69561 4.79537 4.87738 4.96138 5.09906 5.19323 5.19351 5.38496 5.46048 5.48674 5.52314 5.65299 5.73407 5.77948 5.92609 6.10064 6.28909 6.53986 7.50557 7.52641 7.88540 8.00817 8.54145 9.12295 9.44643 9.95184 10.72016 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.047004 B = 0.002912 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.549186 B = 9611.675192 C =10096.387577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.051 4.051 4 C -0.145 4.145 5 C 0.101 3.899 6 N -0.429 5.429 7 C 0.102 3.898 8 C 0.517 3.483 9 O -0.505 6.505 10 O -0.299 6.299 11 C 0.057 3.943 12 C 0.440 3.560 13 O -0.570 6.570 14 N -0.555 5.555 15 C -0.300 4.300 16 H 0.106 0.894 17 C 0.023 3.977 18 N -0.899 5.899 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.107 4.107 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.141 0.859 30 H 0.167 0.833 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.395 0.605 34 H 0.273 0.727 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.451 -19.863 -11.266 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 C -0.059 4.059 4 C -0.165 4.165 5 C -0.059 4.059 6 N -0.141 5.141 7 C -0.034 4.034 8 C 0.360 3.640 9 O -0.394 6.394 10 O -0.211 6.211 11 C -0.021 4.021 12 C 0.225 3.775 13 O -0.453 6.453 14 N -0.193 5.193 15 C -0.429 4.429 16 H 0.124 0.876 17 C -0.179 4.179 18 N -0.540 5.540 19 Si 0.760 3.240 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.127 4.127 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.159 0.841 30 H 0.184 0.816 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.228 0.772 34 H 0.082 0.918 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.047 -18.728 -11.466 23.062 hybrid contribution -0.055 -0.171 0.706 0.728 sum -7.102 -18.899 -10.761 22.878 Atomic orbital electron populations 1.21766 0.93997 1.02273 1.02619 1.20592 0.96687 0.91172 1.03787 1.20310 0.96169 0.96960 0.92419 1.22368 0.99009 0.96170 0.98910 1.22953 0.94850 0.91946 0.96167 1.67771 1.11598 1.36998 0.97685 1.20080 1.00979 0.91550 0.90808 1.20854 0.74069 0.81054 0.88023 1.90829 1.48996 1.68796 1.30754 1.86737 1.74902 1.24860 1.34622 1.22853 1.02434 0.93949 0.82873 1.19291 0.85862 0.85937 0.86415 1.90586 1.57182 1.75274 1.22268 1.41701 1.57877 1.12539 1.07173 1.19780 1.40438 0.87481 0.95165 0.87571 1.25304 0.97477 1.00536 0.94557 1.69629 1.48564 1.37703 0.98069 0.85744 0.78183 0.81241 0.78853 1.19089 1.20662 1.20658 1.21979 0.97188 0.93576 0.99956 0.92195 0.92326 0.91839 0.90189 0.90149 0.84081 0.81614 0.89357 0.89358 0.77187 0.91750 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.90 37.16 0.37 -0.43 16 2 C -0.09 -0.49 6.11 -27.88 -0.17 -0.66 16 3 C -0.05 -0.44 5.17 -104.35 -0.54 -0.98 16 4 C -0.14 -1.16 9.82 -39.31 -0.39 -1.55 16 5 C 0.10 1.07 11.18 -17.56 -0.20 0.87 16 6 N -0.43 -6.54 10.12 -9.81 -0.10 -6.64 16 7 C 0.10 1.54 6.75 -83.02 -0.56 0.98 16 8 C 0.52 9.23 7.95 34.77 0.28 9.51 16 9 O -0.51 -9.15 16.11 -19.21 -0.31 -9.46 16 10 O -0.30 -6.20 9.57 -47.11 -0.45 -6.65 16 11 C 0.06 1.14 5.95 36.01 0.21 1.35 16 12 C 0.44 11.06 7.86 -10.99 -0.09 10.98 16 13 O -0.57 -16.56 16.08 -14.11 -0.23 -16.79 16 14 N -0.56 -14.42 5.29 -10.96 -0.06 -14.48 16 15 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 16 H 0.11 3.14 7.16 -52.48 -0.38 2.76 16 17 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 18 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 19 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 C -0.11 -1.22 9.34 -39.04 -0.36 -1.59 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 28 H 0.08 0.43 8.10 -51.93 -0.42 0.00 16 29 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 30 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 34 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.15 1.55 7.64 -52.49 -0.40 1.15 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -34.48 320.31 -6.34 -40.82 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.03 Total: 5.67 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -1.69 Total: 10.43 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.57 Total: -44.91 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.99 Total: -32.90 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.48 -6.34 -40.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775098689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.877 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds