Wall clock time and date at job start Tue Mar 31 2020 01:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21312 * 119.99717 * 2 1 4 4 C 1.46653 * 119.99931 * 179.97438 * 2 1 3 5 5 C 1.40059 * 120.24169 * 5.81846 * 4 2 1 6 6 C 1.37624 * 119.89784 * 180.02562 * 5 4 2 7 7 C 1.38701 * 120.39502 * 0.02562 * 6 5 4 8 8 N 1.48019 * 119.75306 * 180.02562 * 7 6 5 9 9 O 1.21795 * 120.00016 * 359.97438 * 8 7 6 10 10 O 1.21807 * 119.99832 * 180.02562 * 8 7 6 11 11 C 1.37934 * 120.49210 * 359.71858 * 7 6 5 12 12 C 1.38965 * 120.08864 * 0.55972 * 11 7 6 13 13 N 1.38691 * 120.19733 * 179.71627 * 12 11 7 14 14 C 1.46499 * 120.00191 * 354.36813 * 13 12 11 15 15 C 1.53002 * 109.47630 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47696 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99838 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00249 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00167 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00068 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.46788 * 89.99570 * 20 18 16 22 22 H 1.48492 * 109.47294 * 210.00071 * 20 18 16 23 23 H 1.48505 * 109.47021 * 330.00178 * 20 18 16 24 24 H 1.09000 * 109.47083 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47158 * 300.00425 * 1 2 3 26 26 H 1.09007 * 109.46857 * 60.00472 * 1 2 3 27 27 H 1.08000 * 120.04809 * 0.04553 * 5 4 2 28 28 H 1.07998 * 119.80187 * 180.02562 * 6 5 4 29 29 H 1.08003 * 119.96128 * 180.28100 * 11 7 6 30 30 H 0.96998 * 120.00052 * 174.36559 * 13 12 11 31 31 H 1.09002 * 109.47431 * 59.99744 * 14 13 12 32 32 H 1.09008 * 109.46989 * 299.99828 * 14 13 12 33 33 H 1.09008 * 109.46851 * 299.99982 * 15 14 13 34 34 H 1.09002 * 109.46866 * 59.99467 * 15 14 13 35 35 H 0.96999 * 120.00225 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2403 -1.2701 0.0006 5 6 1.5505 -2.4829 -0.1216 6 6 2.2456 -3.6706 -0.1197 7 6 3.6272 -3.6750 0.0031 8 7 4.3606 -4.9607 0.0029 9 8 3.7509 -6.0096 -0.1043 10 8 5.5739 -4.9697 0.1109 11 6 4.3233 -2.4898 0.1191 12 6 3.6413 -1.2791 0.1254 13 7 4.3385 -0.0864 0.2477 14 6 5.7824 -0.1039 0.4945 15 6 6.3017 1.3324 0.5865 16 6 7.7869 1.3144 0.8410 17 1 8.3084 0.3727 0.9280 18 6 8.4801 2.5000 0.9617 19 7 9.7761 2.4843 1.1843 20 14 7.5781 4.1289 0.8106 21 1 7.1031 4.5578 2.1506 22 1 8.4990 5.1554 0.2597 23 1 6.4151 3.9681 -0.0988 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.4747 -2.4859 -0.2174 28 1 1.7122 -4.6049 -0.2143 29 1 5.3994 -2.5030 0.2097 30 1 3.8700 0.7594 0.1699 31 1 6.2847 -0.6197 -0.3239 32 1 5.9847 -0.6244 1.4307 33 1 6.0994 1.8525 -0.3499 34 1 5.7994 1.8486 1.4047 35 1 10.2639 3.3184 1.2689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808015312.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:04 Heat of formation + Delta-G solvation = -12.318153 kcal Electronic energy + Delta-G solvation = -20846.078987 eV Core-core repulsion = 17426.667485 eV Total energy + Delta-G solvation = -3419.411502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.21148 -40.66371 -38.53442 -36.62851 -36.29683 -33.26275 -32.81065 -31.21565 -30.08626 -28.70976 -26.96277 -24.96417 -23.40478 -22.11568 -21.23152 -20.13539 -19.40293 -18.64112 -17.54823 -17.32230 -16.94630 -16.46205 -15.68315 -15.44788 -14.84572 -14.63062 -14.58494 -14.18110 -13.90062 -13.61773 -13.25033 -12.71583 -12.58073 -12.46156 -11.96784 -11.67801 -11.59087 -11.49748 -11.24891 -11.14505 -10.82047 -10.30997 -10.13645 -10.01494 -9.92394 -9.74372 -9.44710 -8.69261 -7.72270 -6.19066 -4.20631 -0.47426 0.88695 1.14778 1.32466 2.02966 3.21406 3.27918 3.29569 3.32258 3.38025 3.69123 4.15606 4.31901 4.54478 4.63215 4.70529 4.88670 5.00322 5.06156 5.13900 5.15035 5.44095 5.57974 5.66282 5.71293 5.78823 5.86091 5.99842 6.28744 6.35725 6.78489 7.06395 7.11023 7.17764 7.55268 7.61090 7.83649 8.32995 8.82769 9.40763 10.93458 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015276 B = 0.004955 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.513452 B = 5649.699762 C = 7451.418522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.401 3.599 3 O -0.464 6.464 4 C -0.238 4.238 5 C -0.015 4.015 6 C -0.159 4.159 7 C 0.041 3.959 8 N 0.022 4.978 9 O -0.158 6.158 10 O -0.151 6.151 11 C -0.148 4.148 12 C 0.285 3.715 13 N -0.697 5.697 14 C 0.112 3.888 15 C -0.020 4.020 16 C -0.527 4.527 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.879 3.121 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.266 1.266 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.161 0.839 30 H 0.420 0.580 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.020 0.980 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.057 -9.038 -2.907 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.283 3.717 3 O -0.341 6.341 4 C -0.246 4.246 5 C -0.035 4.035 6 C -0.181 4.181 7 C -0.042 4.042 8 N 0.543 4.457 9 O -0.374 6.374 10 O -0.369 6.369 11 C -0.172 4.172 12 C 0.166 3.834 13 N -0.327 5.327 14 C -0.010 4.010 15 C -0.057 4.057 16 C -0.566 4.566 17 H 0.095 0.905 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.706 3.294 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.190 1.190 24 H 0.103 0.897 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.169 0.831 28 H 0.168 0.832 29 H 0.179 0.821 30 H 0.269 0.731 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.690 -7.609 -2.837 22.227 hybrid contribution -0.204 0.716 -0.048 0.746 sum -20.895 -6.893 -2.885 22.191 Atomic orbital electron populations 1.22188 0.93064 1.04847 1.05253 1.22224 0.91971 0.86855 0.70697 1.90297 1.70813 1.34499 1.38451 1.20218 0.92167 0.96057 1.16121 1.21137 1.00063 0.89422 0.92834 1.20521 0.90666 1.00378 1.06542 1.21007 0.92455 0.82897 1.07856 1.43728 1.01342 1.02925 0.97703 1.94506 1.69675 1.20505 1.52731 1.94593 0.95815 1.94129 1.52360 1.20599 1.02473 0.88840 1.05272 1.17818 0.89688 0.87172 0.88692 1.46346 1.10261 1.06392 1.69733 1.21905 0.76582 1.01921 1.00639 1.19746 0.97953 0.90660 0.97379 1.20845 0.90054 0.95063 1.50599 0.90477 1.24959 0.94728 0.99145 0.94134 1.69889 1.07155 1.27607 1.48602 0.86793 0.80013 0.83664 0.78940 1.20108 1.21073 1.19032 0.89704 0.88490 0.88544 0.83096 0.83161 0.82102 0.73134 0.91455 0.91488 0.95748 0.96212 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.17 10.19 36.01 0.37 -0.80 16 2 C 0.40 4.31 7.20 -30.91 -0.22 4.09 16 3 O -0.46 -6.78 14.40 5.53 0.08 -6.70 16 4 C -0.24 -2.65 5.88 -104.90 -0.62 -3.27 16 5 C -0.02 -0.13 9.42 -39.12 -0.37 -0.49 16 6 C -0.16 -1.56 9.52 -39.63 -0.38 -1.94 16 7 C 0.04 0.53 6.85 -79.89 -0.55 -0.02 16 8 N 0.02 0.33 4.45 33.99 0.15 0.48 16 9 O -0.16 -2.26 18.43 -29.46 -0.54 -2.81 16 10 O -0.15 -2.44 18.42 -29.46 -0.54 -2.98 16 11 C -0.15 -2.06 8.80 -39.42 -0.35 -2.41 16 12 C 0.28 4.00 6.66 -83.58 -0.56 3.45 16 13 N -0.70 -11.45 5.58 -58.40 -0.33 -11.78 16 14 C 0.11 2.09 4.88 -4.04 -0.02 2.07 16 15 C -0.02 -0.45 4.16 -27.88 -0.12 -0.56 16 16 C -0.53 -14.44 9.66 -34.44 -0.33 -14.77 16 17 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 19 N -0.89 -26.90 13.96 55.43 0.77 -26.12 16 20 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 24 H 0.08 0.28 5.63 -51.93 -0.29 -0.01 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.15 0.60 5.98 -52.49 -0.31 0.29 16 28 H 0.15 1.19 7.59 -52.49 -0.40 0.79 16 29 H 0.16 2.35 6.24 -52.48 -0.33 2.02 16 30 H 0.42 7.17 4.99 -40.94 -0.20 6.96 16 31 H 0.07 1.24 7.72 -51.93 -0.40 0.84 16 32 H 0.07 1.23 8.13 -51.92 -0.42 0.81 16 33 H 0.02 0.56 7.20 -51.92 -0.37 0.19 16 34 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -31.49 305.78 -7.26 -38.75 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.56 Total: 2.70 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -3.24 Total: -12.68 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.60 Total: -37.42 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -1.01 Total: -12.49 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.49 -7.26 -38.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808015312.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.432 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds