Wall clock time and date at job start Tue Mar 31 2020 01:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21312 * 119.99717 * 2 1 4 4 C 1.46653 * 119.99931 * 179.97438 * 2 1 3 5 5 C 1.40059 * 120.24169 * 5.81846 * 4 2 1 6 6 C 1.37624 * 119.89784 * 180.02562 * 5 4 2 7 7 C 1.38701 * 120.39502 * 0.02562 * 6 5 4 8 8 N 1.48019 * 119.75306 * 180.02562 * 7 6 5 9 9 O 1.21795 * 120.00016 * 359.97438 * 8 7 6 10 10 O 1.21807 * 119.99832 * 180.02562 * 8 7 6 11 11 C 1.37934 * 120.49210 * 359.71858 * 7 6 5 12 12 C 1.38965 * 120.08864 * 0.55972 * 11 7 6 13 13 N 1.38691 * 120.19733 * 179.71627 * 12 11 7 14 14 C 1.46499 * 120.00191 * 354.36813 * 13 12 11 15 15 C 1.53002 * 109.47630 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47696 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99838 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00249 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00167 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00068 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.46788 * 89.99570 * 20 18 16 22 22 H 1.48492 * 109.47294 * 210.00071 * 20 18 16 23 23 H 1.48505 * 109.47021 * 330.00178 * 20 18 16 24 24 H 1.09000 * 109.47083 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47158 * 300.00425 * 1 2 3 26 26 H 1.09007 * 109.46857 * 60.00472 * 1 2 3 27 27 H 1.08000 * 120.04809 * 0.04553 * 5 4 2 28 28 H 1.07998 * 119.80187 * 180.02562 * 6 5 4 29 29 H 1.08003 * 119.96128 * 180.28100 * 11 7 6 30 30 H 0.96998 * 120.00052 * 174.36559 * 13 12 11 31 31 H 1.09002 * 109.47431 * 59.99744 * 14 13 12 32 32 H 1.09008 * 109.46989 * 299.99828 * 14 13 12 33 33 H 1.09008 * 109.46851 * 299.99982 * 15 14 13 34 34 H 1.09002 * 109.46866 * 59.99467 * 15 14 13 35 35 H 0.96999 * 120.00225 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2403 -1.2701 0.0006 5 6 1.5505 -2.4829 -0.1216 6 6 2.2456 -3.6706 -0.1197 7 6 3.6272 -3.6750 0.0031 8 7 4.3606 -4.9607 0.0029 9 8 3.7509 -6.0096 -0.1043 10 8 5.5739 -4.9697 0.1109 11 6 4.3233 -2.4898 0.1191 12 6 3.6413 -1.2791 0.1254 13 7 4.3385 -0.0864 0.2477 14 6 5.7824 -0.1039 0.4945 15 6 6.3017 1.3324 0.5865 16 6 7.7869 1.3144 0.8410 17 1 8.3084 0.3727 0.9280 18 6 8.4801 2.5000 0.9617 19 7 9.7761 2.4843 1.1843 20 14 7.5781 4.1289 0.8106 21 1 7.1031 4.5578 2.1506 22 1 8.4990 5.1554 0.2597 23 1 6.4151 3.9681 -0.0988 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.4747 -2.4859 -0.2174 28 1 1.7122 -4.6049 -0.2143 29 1 5.3994 -2.5030 0.2097 30 1 3.8700 0.7594 0.1699 31 1 6.2847 -0.6197 -0.3239 32 1 5.9847 -0.6244 1.4307 33 1 6.0994 1.8525 -0.3499 34 1 5.7994 1.8486 1.4047 35 1 10.2639 3.3184 1.2689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808015312.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:03 Heat of formation + Delta-G solvation = -32.313551 kcal Electronic energy + Delta-G solvation = -20846.946053 eV Core-core repulsion = 17426.667485 eV Total energy + Delta-G solvation = -3420.278568 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.32478 -41.61985 -39.48884 -37.78037 -37.56273 -35.18944 -33.72811 -32.85853 -30.77889 -30.04187 -28.01643 -26.57298 -24.41868 -23.34620 -22.66129 -21.15754 -20.52403 -19.77184 -19.08968 -18.67389 -18.10443 -17.50328 -16.84655 -16.42448 -16.27222 -15.93538 -15.73162 -15.49322 -15.05720 -14.68732 -14.43046 -14.34115 -13.54697 -13.26992 -13.13199 -13.03005 -12.81737 -12.64506 -12.47426 -12.34285 -12.33769 -12.13340 -11.90644 -11.60114 -11.46680 -10.86812 -10.84128 -10.64176 -8.85182 -8.38537 -6.45573 -1.51102 -0.06795 0.16892 0.28103 1.15802 1.30314 1.31958 1.43394 2.19374 2.27678 2.38636 2.91854 2.96018 3.33670 3.60342 3.73611 3.91504 4.05630 4.14059 4.23455 4.30853 4.43462 4.59851 4.69929 4.76363 4.78828 4.82775 5.00374 5.07932 5.23162 5.23764 5.37274 5.46485 5.90904 6.11252 6.27409 6.43825 6.60196 6.71676 7.19577 8.77646 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015276 B = 0.004955 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.513452 B = 5649.699762 C = 7451.418522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.399 3.601 3 O -0.506 6.506 4 C -0.228 4.228 5 C 0.011 3.989 6 C -0.136 4.136 7 C 0.027 3.973 8 N 0.023 4.977 9 O -0.121 6.121 10 O -0.220 6.220 11 C -0.173 4.173 12 C 0.260 3.740 13 N -0.714 5.714 14 C 0.132 3.868 15 C -0.013 4.013 16 C -0.538 4.538 17 H 0.039 0.961 18 C 0.013 3.987 19 N -0.943 5.943 20 Si 0.950 3.050 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.251 1.251 24 H 0.121 0.879 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.212 0.788 28 H 0.184 0.816 29 H 0.136 0.864 30 H 0.418 0.582 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.024 0.976 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.502 -9.279 -3.489 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.283 3.717 3 O -0.385 6.385 4 C -0.235 4.235 5 C -0.007 4.007 6 C -0.157 4.157 7 C -0.056 4.056 8 N 0.540 4.460 9 O -0.350 6.350 10 O -0.421 6.421 11 C -0.197 4.197 12 C 0.146 3.854 13 N -0.347 5.347 14 C 0.008 3.992 15 C -0.051 4.051 16 C -0.576 4.576 17 H 0.058 0.942 18 C -0.185 4.185 19 N -0.583 5.583 20 Si 0.773 3.227 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.175 1.175 24 H 0.140 0.860 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.229 0.771 28 H 0.201 0.799 29 H 0.154 0.846 30 H 0.266 0.734 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.048 -7.847 -3.410 27.418 hybrid contribution 1.242 0.571 0.106 1.372 sum -24.806 -7.276 -3.305 26.061 Atomic orbital electron populations 1.22274 0.88361 1.07639 1.06237 1.23043 0.94307 0.85598 0.68757 1.90294 1.72094 1.35867 1.40278 1.20714 0.90828 0.98185 1.13802 1.21783 1.02503 0.86975 0.89429 1.21101 0.88876 1.02547 1.03224 1.21223 0.93596 0.81412 1.09337 1.44005 1.01232 1.03558 0.97163 1.94446 1.69271 1.21215 1.50068 1.94623 0.96823 1.94515 1.56146 1.20415 1.01695 0.89867 1.07753 1.18066 0.91138 0.86020 0.90222 1.45953 1.08692 1.07270 1.72834 1.21365 0.78811 0.99028 1.00000 1.19586 0.94975 0.93282 0.97232 1.21168 0.92594 0.93775 1.50047 0.94218 1.25921 0.95486 1.03398 0.93735 1.70038 1.09058 1.28880 1.50281 0.85673 0.79042 0.78420 0.79605 1.18995 1.20481 1.17513 0.86035 0.87536 0.87240 0.77095 0.79867 0.84605 0.73425 0.92415 0.92388 0.95643 0.95741 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.15 10.19 71.24 0.73 -0.42 16 2 C 0.40 7.21 7.20 27.89 0.20 7.41 16 3 O -0.51 -14.04 14.40 -3.13 -0.05 -14.08 16 4 C -0.23 -4.35 5.88 -20.05 -0.12 -4.46 16 5 C 0.01 0.12 9.42 22.57 0.21 0.33 16 6 C -0.14 -2.01 9.52 22.24 0.21 -1.80 16 7 C 0.03 0.68 6.85 36.41 0.25 0.93 16 8 N 0.02 0.66 4.45 -46.37 -0.21 0.46 16 9 O -0.12 -3.20 18.43 18.89 0.35 -2.85 16 10 O -0.22 -7.63 18.42 18.88 0.35 -7.28 16 11 C -0.17 -5.02 8.80 22.37 0.20 -4.83 16 12 C 0.26 7.28 6.66 38.82 0.26 7.53 16 13 N -0.71 -24.23 5.58 -338.68 -1.89 -26.12 16 14 C 0.13 5.28 4.88 86.38 0.42 5.71 16 15 C -0.01 -0.61 4.16 29.85 0.12 -0.49 16 16 C -0.54 -31.00 9.66 25.60 0.25 -30.75 16 17 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 18 C 0.01 0.75 5.47 84.65 0.46 1.21 16 19 N -0.94 -58.97 13.96 21.45 0.30 -58.67 16 20 Si 0.95 44.30 27.47 68.60 1.88 46.19 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 24 H 0.12 -0.21 5.63 -2.39 -0.01 -0.22 16 25 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.21 -0.29 5.98 -2.91 -0.02 -0.31 16 28 H 0.18 1.64 7.59 -2.91 -0.02 1.62 16 29 H 0.14 4.52 6.24 -2.91 -0.02 4.50 16 30 H 0.42 14.47 4.99 -94.56 -0.47 14.00 16 31 H 0.06 2.35 7.72 -2.39 -0.02 2.33 16 32 H 0.06 2.35 8.13 -2.38 -0.02 2.33 16 33 H 0.03 1.19 7.20 -2.38 -0.02 1.17 16 34 H 0.02 1.12 7.57 -2.39 -0.02 1.11 16 35 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -75.16 305.78 4.55 -70.62 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.62 Total: 11.38 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 3.19 Total: -19.63 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -1.80 Total: -84.34 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: 0.65 Total: -24.22 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.19 kcal Total: -75.16 4.55 -70.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808015312.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.304 kcal (2) G-P(sol) polarization free energy of solvation -75.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds