Wall clock time and date at job start Tue Mar 31 2020 01:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47174 * 2 1 4 4 C 1.36507 * 120.00312 * 95.74012 * 3 2 1 5 5 H 1.07994 * 120.00180 * 219.44777 * 4 3 2 6 6 C 1.39269 * 119.99664 * 39.43758 * 4 3 2 7 7 N 1.31234 * 119.99897 * 18.82971 * 6 4 3 8 8 Si 1.86803 * 119.99908 * 198.82484 * 6 4 3 9 9 H 1.48503 * 109.46928 * 90.00545 * 8 6 4 10 10 H 1.48498 * 109.46910 * 210.00400 * 8 6 4 11 11 H 1.48497 * 109.47099 * 330.00218 * 8 6 4 12 12 C 1.34785 * 119.99841 * 275.73890 * 3 2 1 13 13 O 1.21801 * 119.99555 * 180.02562 * 12 3 2 14 14 C 1.41813 * 120.00210 * 0.02562 * 12 3 2 15 15 C 1.35495 * 119.99771 * 180.02562 * 14 12 3 16 16 C 1.46167 * 119.99579 * 179.97438 * 15 14 12 17 17 C 1.38227 * 125.82998 * 179.71297 * 16 15 14 18 18 C 1.39703 * 106.85049 * 179.84806 * 17 16 15 19 19 C 1.37806 * 106.91467 * 0.40737 * 18 17 16 20 20 C 1.46909 * 125.76855 * 179.74109 * 19 18 17 21 21 N 1.34781 * 119.99938 * 180.02562 * 20 19 18 22 22 O 1.21668 * 120.00173 * 0.02788 * 20 19 18 23 23 O 1.34598 * 125.83248 * 0.02562 * 16 15 14 24 24 H 1.08993 * 109.46626 * 300.00221 * 1 2 3 25 25 H 1.09004 * 109.46769 * 60.00026 * 1 2 3 26 26 H 1.09003 * 109.47084 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46935 * 239.99833 * 2 1 3 28 28 H 1.08996 * 109.47000 * 120.00190 * 2 1 3 29 29 H 0.96996 * 119.99922 * 179.97438 * 7 6 4 30 30 H 1.08003 * 119.99996 * 359.97438 * 14 12 3 31 31 H 1.07994 * 120.00338 * 359.97438 * 15 14 12 32 32 H 1.08004 * 126.57258 * 0.02562 * 17 16 15 33 33 H 1.08003 * 126.54446 * 180.11710 * 18 17 16 34 34 H 0.97003 * 119.99981 * 359.97438 * 21 20 19 35 35 H 0.96993 * 119.99630 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3574 1.9853 1.1762 5 1 2.1085 3.0231 1.3416 6 6 3.0241 1.2632 2.1630 7 7 3.6490 0.1516 1.8534 8 14 3.0288 1.8772 3.9272 9 1 1.8620 1.3118 4.6512 10 1 4.2826 1.4480 4.5973 11 1 2.9457 3.3599 3.9356 12 6 2.1330 2.0554 -1.1614 13 8 2.5394 3.2036 -1.1614 14 6 1.7803 1.4280 -2.3834 15 6 1.8960 2.1058 -3.5509 16 6 1.5331 1.4589 -4.8104 17 6 1.5980 2.0362 -6.0647 18 6 1.1655 1.0711 -6.9775 19 6 0.8442 -0.0539 -6.2495 20 6 0.3377 -1.3179 -6.8009 21 7 0.0594 -2.3486 -5.9782 22 8 0.1696 -1.4344 -8.0003 23 8 1.0729 0.2013 -4.9464 24 1 -0.3632 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 4.1136 -0.3511 2.5406 30 1 1.4203 0.4098 -2.3834 31 1 2.2564 3.1238 -3.5510 32 1 1.9237 3.0398 -6.2951 33 1 1.0920 1.1865 -8.0489 34 1 0.1938 -2.2559 -5.0220 35 1 -0.2747 -3.1832 -6.3424 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823543294.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:29 Heat of formation + Delta-G solvation = -37.288206 kcal Electronic energy + Delta-G solvation = -20816.117790 eV Core-core repulsion = 17395.623504 eV Total energy + Delta-G solvation = -3420.494285 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.52951 -39.30225 -38.87326 -35.28840 -34.10296 -33.33587 -32.97133 -32.17297 -29.62627 -29.12438 -25.89682 -24.13308 -22.57812 -21.92424 -21.37514 -20.26030 -18.61804 -18.19538 -17.08745 -17.05305 -16.55569 -16.38084 -15.21389 -15.14829 -14.55404 -14.52886 -14.14243 -13.84882 -13.25060 -13.14932 -13.09766 -13.01420 -12.35063 -12.06109 -11.80449 -11.68499 -11.18904 -11.04747 -10.66179 -10.63160 -10.43103 -10.28909 -10.22752 -10.02573 -9.82495 -9.10216 -8.58674 -7.94153 -7.59822 -6.53417 -4.10714 0.51649 1.63937 2.54261 2.78621 3.04663 3.10564 3.16696 3.21468 3.36215 4.00406 4.33292 4.52478 4.78100 4.83036 4.90695 5.06189 5.44958 5.56440 5.67876 5.70029 5.81675 6.02267 6.08356 6.15620 6.18838 6.38780 6.42809 6.50110 6.66857 6.74727 6.85223 7.07965 7.15376 7.39247 7.92046 8.10793 8.35454 9.03095 9.19845 9.86869 10.49473 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029982 B = 0.003799 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.674789 B = 7367.797068 C = 8012.457285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 N -0.416 5.416 4 C -0.304 4.304 5 H 0.096 0.904 6 C 0.039 3.961 7 N -0.857 5.857 8 Si 0.923 3.077 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.463 3.537 13 O -0.588 6.588 14 C -0.126 4.126 15 C -0.077 4.077 16 C 0.076 3.924 17 C -0.214 4.214 18 C -0.106 4.106 19 C -0.106 4.106 20 C 0.614 3.386 21 N -0.845 5.845 22 O -0.531 6.531 23 O -0.157 6.157 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.108 0.892 29 H 0.273 0.727 30 H 0.122 0.878 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.409 0.591 35 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.228 -5.028 -9.615 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.030 4.030 3 N -0.132 5.132 4 C -0.432 4.432 5 H 0.113 0.887 6 C -0.167 4.167 7 N -0.493 5.493 8 Si 0.749 3.251 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.190 1.190 12 C 0.256 3.744 13 O -0.475 6.475 14 C -0.147 4.147 15 C -0.098 4.098 16 C 0.024 3.976 17 C -0.233 4.233 18 C -0.127 4.127 19 C -0.158 4.158 20 C 0.400 3.600 21 N -0.408 5.408 22 O -0.409 6.409 23 O -0.053 6.053 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.126 0.874 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.178 0.822 34 H 0.238 0.762 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -6.016 -4.786 -9.991 12.606 hybrid contribution 0.022 -0.245 1.115 1.142 sum -5.994 -5.031 -8.876 11.833 Atomic orbital electron populations 1.22245 0.97689 1.00629 1.01826 1.21631 0.91991 0.85418 1.03915 1.43490 1.52750 1.11616 1.05353 1.19544 1.34929 0.98094 0.90661 0.88679 1.25552 0.93884 0.96294 1.01006 1.69833 1.28740 1.16297 1.34434 0.85977 0.77798 0.79784 0.81559 1.20062 1.20743 1.19012 1.17025 0.85027 0.88387 0.83949 1.90675 1.51626 1.18331 1.86903 1.22739 0.97359 1.00322 0.94322 1.21443 1.01891 0.99853 0.86626 1.21590 0.98465 0.81592 0.95988 1.22141 1.08657 1.01801 0.90722 1.22030 0.98545 0.91190 1.00934 1.22149 1.14305 0.97966 0.81401 1.16549 0.76549 0.81346 0.85592 1.43700 1.69187 1.16171 1.11720 1.90898 1.54087 1.81891 1.14060 1.84056 1.64271 1.30261 1.26683 0.92263 0.93644 0.92850 0.92940 0.87419 0.91718 0.86031 0.82129 0.82105 0.82200 0.76189 0.76101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 10.06 37.16 0.37 -2.41 16 2 C 0.09 1.93 5.26 -4.04 -0.02 1.91 16 3 N -0.42 -10.15 2.51 -118.01 -0.30 -10.44 16 4 C -0.30 -8.07 8.86 -15.09 -0.13 -8.21 16 5 H 0.10 2.64 7.79 -52.49 -0.41 2.23 16 6 C 0.04 0.99 4.95 -17.42 -0.09 0.90 16 7 N -0.86 -21.95 11.52 55.51 0.64 -21.31 16 8 Si 0.92 19.53 29.60 -169.99 -5.03 14.50 16 9 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 10 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 12 C 0.46 11.12 7.36 -14.89 -0.11 11.01 16 13 O -0.59 -16.10 16.00 5.10 0.08 -16.02 16 14 C -0.13 -2.38 8.21 -39.20 -0.32 -2.70 16 15 C -0.08 -1.28 9.60 -37.38 -0.36 -1.64 16 16 C 0.08 1.12 7.02 -36.40 -0.26 0.86 16 17 C -0.21 -2.72 10.88 -39.04 -0.42 -3.14 16 18 C -0.11 -1.34 10.63 -39.19 -0.42 -1.76 16 19 C -0.11 -1.42 7.16 -36.23 -0.26 -1.68 16 20 C 0.61 7.75 8.07 -12.75 -0.10 7.64 16 21 N -0.84 -7.35 8.87 30.32 0.27 -7.08 16 22 O -0.53 -8.15 17.70 5.22 0.09 -8.06 16 23 O -0.16 -2.21 10.01 3.67 0.04 -2.17 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.04 0.73 7.48 -51.93 -0.39 0.34 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.98 6.42 -51.93 -0.33 0.65 16 28 H 0.11 2.42 5.64 -51.93 -0.29 2.13 16 29 H 0.27 6.53 8.30 -40.82 -0.34 6.19 16 30 H 0.12 2.04 5.69 -52.48 -0.30 1.74 16 31 H 0.16 2.69 7.46 -52.49 -0.39 2.29 16 32 H 0.16 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.41 3.00 8.58 -40.82 -0.35 2.65 16 35 H 0.41 2.67 8.93 -40.82 -0.36 2.31 16 LS Contribution 314.28 15.07 4.74 4.74 Total: -1.00 -31.84 314.28 -5.24 -37.08 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.65 Total: 7.98 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.12 Total: 0.80 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.61 Total: -38.84 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: 0.21 Total: -26.25 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.84 -5.24 -37.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823543294.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.207 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds