Wall clock time and date at job start Tue Mar 31 2020 01:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47376 * 2 1 4 4 C 1.36498 * 120.00577 * 264.74981 * 3 2 1 5 5 H 1.07999 * 120.00301 * 134.73263 * 4 3 2 6 6 C 1.39268 * 119.99831 * 314.73749 * 4 3 2 7 7 N 1.31236 * 120.00263 * 349.66892 * 6 4 3 8 8 Si 1.86800 * 120.00013 * 169.67666 * 6 4 3 9 9 H 1.48501 * 109.47528 * 59.99966 * 8 6 4 10 10 H 1.48503 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47222 * 299.99400 * 8 6 4 12 12 C 1.34783 * 119.99553 * 84.74867 * 3 2 1 13 13 O 1.21792 * 120.00042 * 179.97438 * 12 3 2 14 14 C 1.41811 * 120.00189 * 0.02562 * 12 3 2 15 15 C 1.35498 * 120.00069 * 185.27331 * 14 12 3 16 16 C 1.46157 * 119.99882 * 9.29068 * 15 14 12 17 17 C 1.38227 * 125.83223 * 218.44257 * 16 15 14 18 18 C 1.39709 * 106.85263 * 179.84522 * 17 16 15 19 19 C 1.37805 * 106.91400 * 0.41193 * 18 17 16 20 20 C 1.46901 * 125.77017 * 179.72209 * 19 18 17 21 21 N 1.34776 * 120.00078 * 179.97438 * 20 19 18 22 22 O 1.21673 * 120.00209 * 359.97438 * 20 19 18 23 23 O 1.34606 * 125.83497 * 38.74605 * 16 15 14 24 24 H 1.08999 * 109.47014 * 300.00135 * 1 2 3 25 25 H 1.09000 * 109.47104 * 59.99479 * 1 2 3 26 26 H 1.08997 * 109.47741 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46536 * 240.00046 * 2 1 3 28 28 H 1.08998 * 109.46597 * 120.01086 * 2 1 3 29 29 H 0.96997 * 119.99998 * 179.97438 * 7 6 4 30 30 H 1.08004 * 120.00086 * 5.00251 * 14 12 3 31 31 H 1.08001 * 120.00089 * 189.28218 * 15 14 12 32 32 H 1.07999 * 126.56981 * 359.97438 * 17 16 15 33 33 H 1.07993 * 126.54179 * 180.14897 * 18 17 16 34 34 H 0.97001 * 120.00225 * 0.02562 * 21 20 19 35 35 H 0.97007 * 119.99768 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3479 1.9886 -1.1771 5 1 2.0162 2.9970 -1.3758 6 6 3.1119 1.3081 -2.1219 7 7 3.6846 0.1701 -1.8065 8 14 3.3218 2.0150 -3.8382 9 1 3.9675 3.3493 -3.7485 10 1 4.1740 1.1067 -4.6468 11 1 1.9914 2.1512 -4.4835 12 6 2.1423 2.0520 1.1624 13 8 2.5488 3.2001 1.1626 14 6 1.8004 1.4208 2.3854 15 6 1.8225 2.1269 3.5416 16 6 1.9983 3.5775 3.5088 17 6 2.7419 4.3230 4.4042 18 6 2.6416 5.6572 4.0020 19 6 1.8353 5.6795 2.8846 20 6 1.4508 6.8779 2.1270 21 7 0.6533 6.7649 1.0464 22 8 1.8524 7.9725 2.4749 23 8 1.4589 4.4163 2.6047 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 4.2164 -0.3040 -2.4647 30 1 1.5182 0.3783 2.3946 31 1 1.7102 1.6178 4.4875 32 1 3.2961 3.9461 5.2510 33 1 3.1039 6.5089 4.4785 34 1 0.3328 5.8924 0.7692 35 1 0.3991 7.5564 0.5464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823543295.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:31 Heat of formation + Delta-G solvation = -27.856169 kcal Electronic energy + Delta-G solvation = -21783.428382 eV Core-core repulsion = 18363.343100 eV Total energy + Delta-G solvation = -3420.085281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.92026 -38.97021 -38.67940 -35.25608 -33.64599 -33.07699 -32.37075 -32.06409 -29.54305 -28.72800 -25.71435 -23.82392 -22.47844 -21.55080 -21.14133 -19.90169 -18.42599 -17.81227 -17.03741 -16.61835 -16.53085 -15.63818 -15.24830 -14.81325 -14.18545 -14.04507 -13.87002 -13.46107 -13.30309 -12.96479 -12.71317 -12.65438 -12.36459 -11.89927 -11.80397 -11.62857 -11.13242 -11.00046 -10.65486 -10.43446 -10.20955 -10.19523 -9.57027 -9.56518 -9.36473 -9.00536 -8.54156 -7.60528 -7.43751 -6.44150 -4.13704 0.99269 1.92618 2.99535 3.14336 3.18051 3.20136 3.22575 3.56222 3.87306 4.05511 4.40500 4.83855 4.96862 4.99724 5.30779 5.32833 5.53978 5.73327 5.90322 6.04068 6.06355 6.12805 6.18790 6.29828 6.40260 6.47299 6.63268 6.78252 6.86015 6.88638 7.14707 7.30243 7.43517 7.67546 8.19869 8.37881 8.43710 9.10001 9.25155 9.93771 10.58752 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.006150 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.687551 B = 4551.605635 C = 5536.796692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 N -0.420 5.420 4 C -0.302 4.302 5 H 0.088 0.912 6 C 0.041 3.959 7 N -0.867 5.867 8 Si 0.922 3.078 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.272 1.272 12 C 0.465 3.535 13 O -0.565 6.565 14 C -0.143 4.143 15 C -0.076 4.076 16 C 0.095 3.905 17 C -0.228 4.228 18 C -0.124 4.124 19 C -0.091 4.091 20 C 0.616 3.384 21 N -0.842 5.842 22 O -0.542 6.542 23 O -0.110 6.110 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.106 0.894 28 H 0.050 0.950 29 H 0.271 0.729 30 H 0.131 0.869 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.411 0.589 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.758 0.145 7.044 9.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.027 4.027 3 N -0.138 5.138 4 C -0.431 4.431 5 H 0.105 0.895 6 C -0.165 4.165 7 N -0.504 5.504 8 Si 0.748 3.252 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.197 1.197 12 C 0.257 3.743 13 O -0.451 6.451 14 C -0.164 4.164 15 C -0.097 4.097 16 C 0.041 3.959 17 C -0.247 4.247 18 C -0.144 4.144 19 C -0.145 4.145 20 C 0.402 3.598 21 N -0.404 5.404 22 O -0.421 6.421 23 O -0.002 6.002 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.148 0.852 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.240 0.760 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.292 1.065 6.960 9.442 hybrid contribution 0.156 -0.203 -1.170 1.198 sum -6.136 0.863 5.789 8.480 Atomic orbital electron populations 1.22243 0.97954 1.00464 1.01634 1.21596 0.91706 0.85739 1.03693 1.43358 1.53797 1.11563 1.05035 1.19322 1.30792 1.00615 0.92336 0.89454 1.25594 0.94141 0.96127 1.00643 1.69732 1.29772 1.15614 1.35288 0.86071 0.78513 0.79190 0.81403 1.19567 1.20800 1.19715 1.17304 0.84400 0.88379 0.84207 1.90712 1.50462 1.17826 1.86079 1.22893 0.97927 1.01129 0.94454 1.21326 1.02406 0.87466 0.98526 1.20979 0.96969 0.90858 0.87134 1.21923 1.06581 0.92634 1.03568 1.21815 0.99066 0.97759 0.95781 1.22034 1.07730 0.83665 1.01044 1.16608 0.77613 0.85884 0.79672 1.43676 1.52342 1.13860 1.30532 1.90847 1.56071 1.25805 1.69420 1.84316 1.57121 1.14622 1.44153 0.93760 0.92437 0.93009 0.87561 0.93128 0.91839 0.85151 0.83304 0.83159 0.83056 0.75971 0.76572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.14 37.16 0.38 -2.36 16 2 C 0.10 1.96 5.25 -4.04 -0.02 1.94 16 3 N -0.42 -10.09 2.47 -118.01 -0.29 -10.38 16 4 C -0.30 -7.98 8.79 -15.09 -0.13 -8.11 16 5 H 0.09 2.39 7.84 -52.49 -0.41 1.98 16 6 C 0.04 1.04 5.11 -17.42 -0.09 0.95 16 7 N -0.87 -22.58 11.44 55.51 0.63 -21.95 16 8 Si 0.92 20.06 29.57 -169.99 -5.03 15.03 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 12 C 0.47 10.88 7.21 -14.89 -0.11 10.77 16 13 O -0.57 -14.88 12.28 -19.77 -0.24 -15.12 16 14 C -0.14 -2.57 8.65 -39.20 -0.34 -2.91 16 15 C -0.08 -1.20 10.15 -37.38 -0.38 -1.58 16 16 C 0.09 1.73 5.54 -36.41 -0.20 1.53 16 17 C -0.23 -3.73 10.88 -39.04 -0.42 -4.16 16 18 C -0.12 -2.15 10.63 -39.19 -0.42 -2.56 16 19 C -0.09 -1.73 7.16 -36.24 -0.26 -1.99 16 20 C 0.62 11.16 8.07 -12.75 -0.10 11.05 16 21 N -0.84 -12.22 8.87 30.31 0.27 -11.95 16 22 O -0.54 -10.86 17.70 5.21 0.09 -10.77 16 23 O -0.11 -2.20 7.53 -21.22 -0.16 -2.36 16 24 H 0.04 0.69 7.67 -51.93 -0.40 0.29 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.11 2.40 5.78 -51.93 -0.30 2.10 16 28 H 0.05 0.93 6.33 -51.93 -0.33 0.60 16 29 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 30 H 0.13 1.96 6.14 -52.48 -0.32 1.63 16 31 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 34 H 0.41 5.85 8.58 -40.82 -0.35 5.50 16 35 H 0.40 4.73 8.93 -40.82 -0.36 4.36 16 LS Contribution 308.76 15.07 4.65 4.65 Total: -1.00 -32.60 308.76 -5.89 -38.50 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -3.72 Total: 11.76 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -2.10 Total: 2.58 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.61 Total: -44.27 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.31 Total: -28.25 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.60 -5.89 -38.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823543295.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.639 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds