Wall clock time and date at job start Tue Mar 31 2020 01:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47376 * 2 1 4 4 C 1.36498 * 120.00577 * 264.74981 * 3 2 1 5 5 H 1.07999 * 120.00301 * 134.73263 * 4 3 2 6 6 C 1.39268 * 119.99831 * 314.73749 * 4 3 2 7 7 N 1.31236 * 120.00263 * 349.66892 * 6 4 3 8 8 Si 1.86800 * 120.00013 * 169.67666 * 6 4 3 9 9 H 1.48501 * 109.47528 * 59.99966 * 8 6 4 10 10 H 1.48503 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47222 * 299.99400 * 8 6 4 12 12 C 1.34783 * 119.99553 * 84.74867 * 3 2 1 13 13 O 1.21792 * 120.00042 * 179.97438 * 12 3 2 14 14 C 1.41811 * 120.00189 * 0.02562 * 12 3 2 15 15 C 1.35498 * 120.00069 * 185.27331 * 14 12 3 16 16 C 1.46157 * 119.99882 * 9.29068 * 15 14 12 17 17 C 1.38227 * 125.83223 * 218.44257 * 16 15 14 18 18 C 1.39709 * 106.85263 * 179.84522 * 17 16 15 19 19 C 1.37805 * 106.91400 * 0.41193 * 18 17 16 20 20 C 1.46901 * 125.77017 * 179.72209 * 19 18 17 21 21 N 1.34776 * 120.00078 * 179.97438 * 20 19 18 22 22 O 1.21673 * 120.00209 * 359.97438 * 20 19 18 23 23 O 1.34606 * 125.83497 * 38.74605 * 16 15 14 24 24 H 1.08999 * 109.47014 * 300.00135 * 1 2 3 25 25 H 1.09000 * 109.47104 * 59.99479 * 1 2 3 26 26 H 1.08997 * 109.47741 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46536 * 240.00046 * 2 1 3 28 28 H 1.08998 * 109.46597 * 120.01086 * 2 1 3 29 29 H 0.96997 * 119.99998 * 179.97438 * 7 6 4 30 30 H 1.08004 * 120.00086 * 5.00251 * 14 12 3 31 31 H 1.08001 * 120.00089 * 189.28218 * 15 14 12 32 32 H 1.07999 * 126.56981 * 359.97438 * 17 16 15 33 33 H 1.07993 * 126.54179 * 180.14897 * 18 17 16 34 34 H 0.97001 * 120.00225 * 0.02562 * 21 20 19 35 35 H 0.97007 * 119.99768 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3479 1.9886 -1.1771 5 1 2.0162 2.9970 -1.3758 6 6 3.1119 1.3081 -2.1219 7 7 3.6846 0.1701 -1.8065 8 14 3.3218 2.0150 -3.8382 9 1 3.9675 3.3493 -3.7485 10 1 4.1740 1.1067 -4.6468 11 1 1.9914 2.1512 -4.4835 12 6 2.1423 2.0520 1.1624 13 8 2.5488 3.2001 1.1626 14 6 1.8004 1.4208 2.3854 15 6 1.8225 2.1269 3.5416 16 6 1.9983 3.5775 3.5088 17 6 2.7419 4.3230 4.4042 18 6 2.6416 5.6572 4.0020 19 6 1.8353 5.6795 2.8846 20 6 1.4508 6.8779 2.1270 21 7 0.6533 6.7649 1.0464 22 8 1.8524 7.9725 2.4749 23 8 1.4589 4.4163 2.6047 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 4.2164 -0.3040 -2.4647 30 1 1.5182 0.3783 2.3946 31 1 1.7102 1.6178 4.4875 32 1 3.2961 3.9461 5.2510 33 1 3.1039 6.5089 4.4785 34 1 0.3328 5.8924 0.7692 35 1 0.3991 7.5564 0.5464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823543295.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:31 Heat of formation + Delta-G solvation = -50.561564 kcal Electronic energy + Delta-G solvation = -21784.412961 eV Core-core repulsion = 18363.343100 eV Total energy + Delta-G solvation = -3421.069861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.30592 -40.58597 -40.18841 -36.98508 -35.02132 -34.54227 -33.93104 -33.66466 -31.12331 -30.13991 -27.43102 -25.35323 -23.98615 -23.01956 -22.53308 -21.32335 -19.92031 -19.26735 -18.70058 -18.15176 -17.96006 -17.23242 -16.89476 -16.39785 -15.67685 -15.54105 -15.47575 -15.06511 -14.67003 -14.44540 -14.13894 -13.97147 -13.76538 -13.50231 -13.46198 -13.06946 -12.88011 -12.60314 -12.34733 -12.10920 -11.78997 -11.65324 -10.99183 -10.91617 -10.81877 -10.70711 -10.31236 -9.32064 -8.96508 -8.32498 -6.11718 -0.38940 0.55610 1.38119 1.40041 1.47624 1.66591 1.86417 2.15674 2.27287 2.59117 2.68265 3.14297 3.24050 3.66832 3.97804 4.05558 4.22385 4.35845 4.57648 4.67113 4.70180 4.79883 4.87047 4.97368 5.05064 5.13629 5.29157 5.34436 5.43855 5.58929 5.62091 5.66703 5.97362 6.26186 6.32935 6.62612 7.06613 7.22431 7.49089 8.14670 8.68299 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.006150 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.687551 B = 4551.605635 C = 5536.796692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.097 3.903 3 N -0.440 5.440 4 C -0.331 4.331 5 H 0.061 0.939 6 C 0.005 3.995 7 N -0.891 5.891 8 Si 0.977 3.023 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.261 1.261 12 C 0.459 3.541 13 O -0.607 6.607 14 C -0.175 4.175 15 C -0.032 4.032 16 C 0.058 3.942 17 C -0.212 4.212 18 C -0.130 4.130 19 C -0.117 4.117 20 C 0.610 3.390 21 N -0.825 5.825 22 O -0.568 6.568 23 O -0.130 6.130 24 H 0.055 0.945 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.273 0.727 30 H 0.163 0.837 31 H 0.209 0.791 32 H 0.189 0.811 33 H 0.168 0.832 34 H 0.413 0.587 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 -0.969 8.816 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 N -0.158 5.158 4 C -0.460 4.460 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.528 5.528 8 Si 0.801 3.199 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.186 1.186 12 C 0.252 3.748 13 O -0.495 6.495 14 C -0.196 4.196 15 C -0.053 4.053 16 C 0.004 3.996 17 C -0.230 4.230 18 C -0.150 4.150 19 C -0.171 4.171 20 C 0.396 3.604 21 N -0.387 5.387 22 O -0.450 6.450 23 O -0.023 6.023 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.181 0.819 31 H 0.226 0.774 32 H 0.207 0.793 33 H 0.185 0.815 34 H 0.243 0.757 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -6.849 -0.080 8.716 11.085 hybrid contribution 0.312 0.249 -1.533 1.584 sum -6.537 0.169 7.183 9.714 Atomic orbital electron populations 1.22116 0.95203 1.02452 1.01252 1.21656 0.93920 0.83769 1.03269 1.43554 1.54827 1.12824 1.04616 1.19234 1.32226 1.00206 0.94352 0.92072 1.26214 0.93662 0.96462 1.03480 1.69808 1.30419 1.16380 1.36186 0.85247 0.78838 0.77880 0.77904 1.20830 1.19733 1.18556 1.18127 0.83069 0.87852 0.85745 1.90679 1.51992 1.19662 1.87119 1.22807 1.01554 1.02754 0.92466 1.22118 0.96937 0.86094 1.00119 1.21777 0.98138 0.92234 0.87446 1.22397 1.05260 0.91711 1.03658 1.22207 0.98469 0.99080 0.95281 1.22375 1.08828 0.83778 1.02118 1.16705 0.77884 0.85513 0.80259 1.43544 1.50993 1.14644 1.29517 1.90820 1.57359 1.26491 1.70361 1.84283 1.57836 1.15121 1.45055 0.92559 0.94359 0.89721 0.90287 0.91110 0.91709 0.81943 0.77440 0.79329 0.81486 0.75697 0.74980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.82 10.14 71.98 0.73 -4.09 16 2 C 0.10 3.88 5.25 86.38 0.45 4.33 16 3 N -0.44 -21.46 2.47 -645.46 -1.59 -23.05 16 4 C -0.33 -18.15 8.79 84.21 0.74 -17.41 16 5 H 0.06 3.55 7.84 -2.91 -0.02 3.53 16 6 C 0.00 0.25 5.11 85.03 0.43 0.69 16 7 N -0.89 -47.19 11.44 21.72 0.25 -46.94 16 8 Si 0.98 42.08 29.57 68.60 2.03 44.11 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 11 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 12 C 0.46 21.45 7.21 85.12 0.61 22.06 16 13 O -0.61 -32.53 12.28 19.14 0.23 -32.30 16 14 C -0.18 -5.86 8.65 22.52 0.19 -5.67 16 15 C -0.03 -0.89 10.15 23.69 0.24 -0.65 16 16 C 0.06 1.97 5.54 24.32 0.13 2.11 16 17 C -0.21 -6.29 10.88 22.62 0.25 -6.05 16 18 C -0.13 -4.33 10.63 22.52 0.24 -4.09 16 19 C -0.12 -4.45 7.16 24.44 0.17 -4.27 16 20 C 0.61 22.34 8.07 86.51 0.70 23.04 16 21 N -0.82 -24.26 8.87 -176.23 -1.56 -25.82 16 22 O -0.57 -22.97 17.70 -4.26 -0.08 -23.05 16 23 O -0.13 -5.15 7.53 13.95 0.11 -5.05 16 24 H 0.06 1.63 7.67 -2.39 -0.02 1.62 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.08 3.61 5.78 -2.39 -0.01 3.60 16 28 H 0.07 2.47 6.33 -2.39 -0.02 2.46 16 29 H 0.27 13.63 8.30 -92.71 -0.77 12.86 16 30 H 0.16 4.27 6.14 -2.91 -0.02 4.25 16 31 H 0.21 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.19 3.99 8.06 -2.91 -0.02 3.97 16 33 H 0.17 4.89 8.06 -2.91 -0.02 4.87 16 34 H 0.41 12.09 8.58 -92.71 -0.80 11.30 16 35 H 0.42 9.78 8.93 -92.70 -0.83 8.96 16 Total: -1.00 -74.26 308.76 3.81 -70.45 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.47 Total: 31.66 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 4.90 Total: 10.01 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -2.91 Total: -95.82 kcal Atomic # 8 Polarization: -60.66 SS G_CDS: 0.26 Total: -60.40 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -74.26 3.81 -70.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823543295.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.884 kcal (2) G-P(sol) polarization free energy of solvation -74.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds