Wall clock time and date at job start Tue Mar 31 2020 01:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50689 * 109.47330 * 120.00170 * 2 1 3 5 5 H 1.08008 * 119.99924 * 120.00215 * 4 2 1 6 6 C 1.37874 * 120.00601 * 300.00213 * 4 2 1 7 7 N 1.31513 * 120.00567 * 180.02562 * 6 4 2 8 8 Si 1.86807 * 119.99662 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46966 * 90.00236 * 8 6 4 10 10 H 1.48497 * 109.47213 * 210.00302 * 8 6 4 11 11 H 1.48501 * 109.47155 * 330.00517 * 8 6 4 12 12 N 1.46504 * 109.46941 * 240.00615 * 2 1 3 13 13 C 1.34778 * 120.00067 * 84.99646 * 12 2 1 14 14 O 1.21707 * 120.00181 * 0.02562 * 13 12 2 15 15 C 1.46374 * 119.99683 * 180.02562 * 13 12 2 16 16 C 1.35253 * 119.99718 * 186.49492 * 15 13 12 17 17 C 1.46329 * 120.00048 * 9.07675 * 16 15 13 18 18 C 1.38085 * 125.82591 * 217.56722 * 17 16 15 19 19 C 1.39803 * 106.84077 * 179.84583 * 18 17 16 20 20 C 1.37726 * 106.89578 * 0.41653 * 19 18 17 21 21 C 1.47004 * 125.77055 * 179.74395 * 20 19 18 22 22 N 1.34780 * 120.00019 * 180.02562 * 21 20 19 23 23 O 1.21657 * 119.99863 * 0.02562 * 21 20 19 24 24 O 1.34582 * 125.82251 * 37.87793 * 17 16 15 25 25 H 1.09000 * 109.46837 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46934 * 59.99430 * 1 2 3 27 27 H 1.09003 * 109.46528 * 299.99624 * 1 2 3 28 28 H 0.96998 * 119.99877 * 179.97438 * 7 6 4 29 29 H 0.96995 * 119.99962 * 264.99666 * 12 2 1 30 30 H 1.07995 * 120.00307 * 6.49323 * 15 13 12 31 31 H 1.08003 * 119.99654 * 189.07416 * 16 15 13 32 32 H 1.08001 * 126.57974 * 359.97438 * 18 17 16 33 33 H 1.08000 * 126.55243 * 180.12835 * 19 18 17 34 34 H 0.97003 * 119.99926 * 359.97438 * 22 21 20 35 35 H 0.96996 * 119.99895 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8019 0.8743 2.6995 10 1 0.9773 1.9951 3.9071 11 1 0.8491 2.1772 1.4924 12 7 2.0184 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8580 1.1629 -2.4117 15 6 2.6343 -0.7082 -3.5525 16 6 2.8885 -0.0078 -4.6813 17 6 2.8691 1.4551 -4.6547 18 6 2.3927 2.2756 -5.6580 19 6 2.5611 3.5921 -5.2188 20 6 3.1411 3.5269 -3.9714 21 6 3.5055 4.6773 -3.1319 22 7 4.0704 4.4785 -1.9245 23 8 3.2970 5.8089 -3.5270 24 8 3.3180 2.2307 -3.6505 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 0.5138 0.8901 28 1 1.9042 -0.5276 4.4374 29 1 2.2491 -1.6316 -1.1528 30 1 2.7910 -1.7765 -3.5332 31 1 3.1058 -0.5283 -5.6024 32 1 1.9691 1.9606 -6.6002 33 1 2.2924 4.4890 -5.7571 34 1 4.2363 3.5762 -1.6093 35 1 4.3111 5.2376 -1.3708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824688775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:40 Heat of formation + Delta-G solvation = -35.829622 kcal Electronic energy + Delta-G solvation = -21484.211246 eV Core-core repulsion = 18063.780210 eV Total energy + Delta-G solvation = -3420.431036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.32251 -39.23997 -38.94048 -35.26855 -33.94269 -33.44471 -32.70351 -32.44878 -30.19456 -28.76098 -25.30040 -24.65109 -22.58633 -21.61075 -20.64567 -20.02293 -19.39977 -18.33208 -17.41463 -16.82166 -16.44107 -15.95226 -15.73463 -15.02416 -14.49337 -14.36190 -14.15456 -13.84403 -13.73572 -13.04103 -13.01046 -12.94327 -12.75600 -12.25486 -12.16579 -11.85987 -11.34639 -10.87231 -10.42779 -10.25509 -10.08631 -9.83870 -9.75197 -9.70897 -9.31973 -9.28549 -8.81458 -8.24519 -7.98464 -6.26783 -4.29686 0.58419 1.58142 2.59460 2.84503 3.18796 3.28621 3.31062 3.34709 3.61691 3.71722 3.91243 4.25946 4.56034 4.96364 4.98909 5.08095 5.13004 5.30897 5.68219 5.72524 5.83595 5.97076 6.13162 6.26029 6.33119 6.47320 6.50638 6.68162 6.80152 7.00243 7.13598 7.21471 7.39816 7.45064 8.08357 8.16834 8.45253 8.69540 8.85215 9.33960 10.85297 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017938 B = 0.005697 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.592892 B = 4913.573264 C = 5964.086319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.238 3.762 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.691 5.691 13 C 0.519 3.481 14 O -0.539 6.539 15 C -0.166 4.166 16 C -0.035 4.035 17 C 0.063 3.937 18 C -0.209 4.209 19 C -0.127 4.127 20 C -0.075 4.075 21 C 0.613 3.387 22 N -0.839 5.839 23 O -0.536 6.536 24 O -0.114 6.114 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.047 0.953 28 H 0.268 0.732 29 H 0.396 0.604 30 H 0.141 0.859 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.411 0.589 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.893 1.499 -16.026 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.339 5.339 13 C 0.306 3.694 14 O -0.419 6.419 15 C -0.187 4.187 16 C -0.055 4.055 17 C 0.010 3.990 18 C -0.228 4.228 19 C -0.148 4.148 20 C -0.129 4.129 21 C 0.398 3.602 22 N -0.402 5.402 23 O -0.415 6.415 24 O -0.007 6.007 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.229 0.771 30 H 0.159 0.841 31 H 0.176 0.824 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.241 0.759 35 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.625 2.875 -15.894 16.364 hybrid contribution -0.548 -0.038 0.656 0.855 sum 2.078 2.838 -15.239 15.639 Atomic orbital electron populations 1.22449 0.99303 1.00847 0.99322 1.19093 0.90102 0.94623 0.82736 0.93372 1.21029 1.33346 1.14488 0.88521 0.90180 1.24822 0.95437 0.96665 0.95535 1.69862 1.44807 1.40078 0.98073 0.86889 0.80608 0.83607 0.77423 1.20334 1.22125 1.18743 1.46136 1.64254 1.13842 1.09639 1.18394 0.79794 0.87200 0.84035 1.90818 1.51240 1.15257 1.84570 1.23590 1.00173 1.01157 0.93827 1.21492 0.97967 0.87381 0.98672 1.20992 1.00577 0.91593 0.85887 1.21997 1.07823 0.91984 1.00993 1.21905 1.00198 0.98437 0.94236 1.22203 1.10567 0.82487 0.97612 1.16621 0.76643 0.86032 0.80862 1.43705 1.64080 1.13396 1.18999 1.90870 1.55622 1.21850 1.73146 1.84268 1.62325 1.15096 1.38978 0.92822 0.94568 0.93482 0.92236 0.77053 0.84145 0.82411 0.82738 0.82614 0.75892 0.76196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.97 37.16 0.33 -3.20 16 2 C 0.24 5.45 2.15 -69.08 -0.15 5.30 16 3 H 0.05 1.22 6.63 -51.93 -0.34 0.87 16 4 C -0.54 -14.01 9.31 -34.45 -0.32 -14.33 16 5 H 0.08 2.20 7.98 -52.48 -0.42 1.78 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 8 Si 0.88 21.43 24.37 -169.99 -4.14 17.29 16 9 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 11 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 12 N -0.69 -12.87 5.06 -56.34 -0.29 -13.15 16 13 C 0.52 9.09 7.51 -12.99 -0.10 8.99 16 14 O -0.54 -11.17 12.15 -19.61 -0.24 -11.41 16 15 C -0.17 -2.02 10.08 -37.37 -0.38 -2.40 16 16 C -0.04 -0.39 10.15 -37.39 -0.38 -0.76 16 17 C 0.06 0.89 5.61 -36.39 -0.20 0.69 16 18 C -0.21 -2.65 10.88 -39.05 -0.42 -3.08 16 19 C -0.13 -1.82 10.64 -39.18 -0.42 -2.24 16 20 C -0.07 -1.21 7.16 -36.22 -0.26 -1.47 16 21 C 0.61 9.93 8.07 -12.71 -0.10 9.82 16 22 N -0.84 -11.15 8.87 30.34 0.27 -10.88 16 23 O -0.54 -9.82 17.70 5.23 0.09 -9.73 16 24 O -0.11 -1.89 7.48 -20.94 -0.16 -2.04 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 29 H 0.40 6.37 8.52 -40.82 -0.35 6.03 16 30 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.16 1.00 8.06 -52.48 -0.42 0.57 16 32 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.41 5.36 8.58 -40.82 -0.35 5.01 16 35 H 0.41 4.45 8.93 -40.82 -0.36 4.09 16 LS Contribution 306.81 15.07 4.62 4.62 Total: -1.00 -33.96 306.81 -5.27 -39.23 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -3.71 Total: 11.76 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.49 Total: -0.60 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.76 Total: -49.12 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.30 Total: -23.18 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.14 Total: 17.29 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.96 -5.27 -39.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824688775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.401 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds